Advanced iRefWeb searches
The general rule for linking to iRefWeb is
http://wodaklab.org/iRefWeb/search/index?q=xxx:yyy
where xxx = some field specifier yyy = query string to find in that field
You can also use this xxx:yyy format directly in the iRefWeb search interface for advanced searching or to test links to iRefWeb.
You can use this format to link to specific records in iRefWeb using the rigid
http://wodaklab.org/iRefWeb/search/index?q=rigid:DYa8mY5yb99oBLOIut37lj70N3I
/ in the rigid is no problem in my browser
http://wodaklab.org/iRefWeb/search/index?q=rigid:DhjxQ/mY1WTUbsKggOA7TeD8gm8
+ in the does not seem to be a problem either
http://wodaklab.org/iRefWeb/search/index?q=rigid:+++rYMwOW+jyQAUvSOiAxurVy00
Linking to search terms without specifying a field delimiter
http://wodaklab.org/iRefWeb/search/index?q=P04050
We still have direct links for interactions and interactors, and a direct link to view a protein's interaction network:
http://wodaklab.org/iRefWeb/interaction/show/56
http://wodaklab.org/iRefWeb/interactor/show/1354791
http://wodaklab.org/netility/graph?type=PROTEIN&id=1354791
We also have some special patterns, like GENE_ID, and ALIAS, PUBMED_ID that are synoms of a sort to queries that can also be expressed using the standard pattern, but this has more to do with the input boxes on the search form. In these three case there's no "q=". See table below.
There are lots of other xxx field specifiers. If you are interested, look at the table below.
| field | description | standard pattern | special pattern |
| ACT_ID | intearctor.id | ||
| ALIAS | protein alias | alias:SOD2 | alias=SOD2 |
| DB | source database | db:bind | |
| ETYPE | internal use only | ||
| EXP_ID | interaction_source_db_experiment.id | ||
| GENE_ID | entrez gene id | gene_id:6944 | gene_id=6944 |
| GENETIC | 0=false, 1=true, 2=both | genetic:0 | |
| HASH | internal use only | ||
| HPR | |||
| INT_ID | interaction.id | ||
| INT_REC_ID | source databse record id | int_rec_id:EBI-759874 | |
| INT_TAX | latin name | int_tax:\"Mus musculus\" | |
| INT_TAX_CNT | distinct organisms in interaction | ||
| INT_TAX_ID | standard taxonomy id | ||
| INTERACTION_DETECTION_DESC | interaction_detection_desc:\"interaction detection method - dihydrofolate reductase reconstruction\" | ||
| INTERACTION_DETECTION_NAME | |||
| INTERACTION_DETECTION_TYPE_ID | interaction_dection_type.id | ||
| INTERACTION_TYPE_DESC | |||
| INTERACTION_TYPE_ID | interaction_type.id | ||
| INTERACTION_TYPE_NAME | |||
| ISD_ID | interaction_source_db.id | ||
| LPR | lpr:[0 TO 20] | ||
| MAX_CARD | max cardinality of interactors | ||
| NP | |||
| PREDICTED | 0=false, 1=true, 2=both | ||
| PUBLIC | 0=false, 1=true, 2=both | ||
| PUBMED_ID | pubmed_id:18467557 | pubmed_id=18467557 | |
| RIGID | rigid:LH6e8bQ+rKDoOoGr+mHan7bGLnk | ||
| ROGID | rogid:Wgd0xHDx1jc9msL55PpTWFNL7cA4932 | ||
| TEXT | full text field combining everything | ||
| TTL_DISTINCT_DBS | ttl_distinct_dbs:[2 TO 3] | ||
| TTL_INTERACTORS | |||
| TTL_SRC_RECORDS | |||
All iRefIndex Pages
Follow this link for a listing of all iRefIndex related pages (archived and current).
