Statistics iRefIndex 5.0

From irefindex

Summary

  • Total interactions : 871,172
  • Total distinct interactions (based on RIGID): 357,170
  • Total distinct proteins (based on ROGID) : 83.940

This page lists statistics for our internal version of iRefIndex that includes all of the data from sources used for the current build Sources_iRefIndex_5.0. This full build of the iRefIndex contains data that cannot be redistributed according to usage policies of the source databases (namely, from DIP, HPRD and MPact databases). Please contact ian.donaldson at biotek.uio.no if you would like to obtain a copy of the full iRefIndex build under an academic, collaborative agreement.

The data that are freely available at ftp://ftp.no.embnet.org/irefindex/data/current/ are a subset of the full build that we can freely redistribute according to the usage policies of the source databases. Please refer to http://irefindex.uio.no/wiki/Statistics_iRefIndex_free_5.0 for statistics that are applicable to this free dataset.

Interactions available from major taxonomies

Top 15 uncorrected taxonomy groups in iRefIndex (Taxonomy identifiers as they appear in original source)

  • Full list [[1]]

Top 15 corrected taxonomy groups in iRefIndex (Taxonomy identifiers corrected using sequence database information)

  • Full list [[2]]

Interactions (Corresponds to Table 6 in PMID 18823568)

BIND 62895
BIOGRID 20557 164770
DIP 25930 28958 56429
HPRD 2947 2016 862 39966
INTACT 24398 26968 25004 8442 113878
MINT 22090 34777 30077 6612 45434 77540
MPACT 6938 8489 6793 0 6132 6427 13321
MPPI 385 27 41 304 89 73 0 826
OPHID 2226 1357 902 18063 7248 6417 0 183 47297
CORUM 116 18 29 403 122 69 0 9 158 1919
I2D 0 0 0 0 0 0 0 0 0 0 0
BIND BIOGRID DIP HPRD INTACT MINT MPACT MPPI OPHID CORUM I2D
(25790) (111300) (13529) (16454) (56806) (16318) (1132) (235) (26466) (1398) (0)

Interactors

BIND 40782
BIOGRID 14505 27694
DIP 15397 13105 20107
HPRD 3357 2522 1251 9750
INTACT 18203 16989 15718 5967 42060
MINT 16368 15163 15029 4777 23565 28854
MPACT 4651 4560 4639 0 4874 4756 4972
MPPI 674 219 294 430 579 511 0 861
OPHID 3253 2324 1242 7426 5809 4794 1 422 9626
CORUM 1561 756 671 1867 2312 1770 0 322 1849 3581
I2D 0 0 0 0 0 0 0 0 0 0 0
BIND BIOGRID DIP HPRD INTACT MINT MPACT MPPI OPHID CORUM I2D
(18427) (8245) (1835) (1078) (12120) (3369) (16) (42) (1248) (614) (0)

Summary of mapping interaction records to RIGs (Corresponds to Table 5 in PMID 18823568)

Source Total records Protein-only interactors PPI Assigned to RIGID Unique RIGIDs
bind 193648 93957 91264(97.1338%) 62895(68.9155%)
grid 242126 242126 241823(99.8749%) 164770(68.1366%)
dip 57675 57675 56597(98.1309%) 56429(99.7032%)
intact 133302 132525 132078(99.6627%) 113878(86.2203%)
mint 110788 110788 109195(98.5621%) 77540(71.0106%)
HPRD 40075 40075 40075(100.0000%) 39966(99.7280%)
ophid 73257 73257 72907(99.5222%) 47297(64.8731%)
MPACT 16504 16504 16286(98.6791%) 13321(81.7942%)
MPPI 1814 1814 1688(93.0540%) 826(48.9336%)
CORUM 2104 2104 2104(100.0000%) 1919(91.2072%)
ALL 871293 770825 764017(99.1168%) 373488(48.8848%)

Assignment of protein interactors to ROGs (Corresponds to Table 3 in PMID 18823568)

ROG summary (Corresponds to Table 4 in PMID 18823568)

Scores (Corresponds to Table 2 in PMID 18823568)