Difference between revisions of "Sources iRefIndex 5.0"
From irefindex
(New page: == Sequence related resources == {| {{table}} | align="center" style="background:#f0f0f0;"|'''Source''' | align="center" style="background:#f0f0f0;"|'''Format''' | align="center" style="b...) |
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| SEGUID||Tab-delimited text ||ftp://bioinformatics.anl.gov/seguid/ seguidannotation||September 23rd, 2008 | | SEGUID||Tab-delimited text ||ftp://bioinformatics.anl.gov/seguid/ seguidannotation||September 23rd, 2008 | ||
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| − | | UniProt||Text||http://beta.uniprot.org/downloads<br>Download : 1.UniProtKB/Swiss-Prot (uniprot_sprot.dat.gz) 2.UniProtKB/TrEMBL (uniprot_trembl.dat.gz)||UniProt Release 15. | + | | UniProt||Text||http://beta.uniprot.org/downloads<br>Download : 1.UniProtKB/Swiss-Prot (uniprot_sprot.dat.gz) 2.UniProtKB/TrEMBL (uniprot_trembl.dat.gz)||UniProt Release 15.3 (May 26th 2009) |
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| − | | UniProt, IsoForms||FASTA||http://beta.uniprot.org/downloads uniprot_sprot_varsplic.fasta.gz||Release 15. | + | | UniProt, IsoForms||FASTA||http://beta.uniprot.org/downloads uniprot_sprot_varsplic.fasta.gz||Release 15.3 (May 26th 2009) |
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| − | | UniProt, SGD||Tab-delimited text file.||http://www.expasy.org/cgi-bin/lists?yeast.txt Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD||Release:57. | + | | UniProt, SGD||Tab-delimited text file.||http://www.expasy.org/cgi-bin/lists?yeast.txt Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD||Release:57.3 (May 26th 2009) |
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| − | | UniProt, FLY||Tab-delimited text file.||http://www.expasy.org/cgi-bin/lists?fly.txt Drosophila: entries, gene names and cross-references to FlyBase.||Release: 57. | + | | UniProt, FLY||Tab-delimited text file.||http://www.expasy.org/cgi-bin/lists?fly.txt Drosophila: entries, gene names and cross-references to FlyBase.||Release: 57.3 (May 26th 2009) |
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| NCBI, RefSeq||GenPept||ftp://ftp.ncbi.nih.gov/refseq/release/complete see *.protein.gpff.gz files||Release 35 (May 4th, 2009) | | NCBI, RefSeq||GenPept||ftp://ftp.ncbi.nih.gov/refseq/release/complete see *.protein.gpff.gz files||Release 35 (May 4th, 2009) | ||
Revision as of 10:31, 2 June 2009
| Source | Format | Location | Version (date) |
| SEGUID | Tab-delimited text | ftp://bioinformatics.anl.gov/seguid/ seguidannotation | September 23rd, 2008 |
| UniProt | Text | http://beta.uniprot.org/downloads Download : 1.UniProtKB/Swiss-Prot (uniprot_sprot.dat.gz) 2.UniProtKB/TrEMBL (uniprot_trembl.dat.gz) |
UniProt Release 15.3 (May 26th 2009) |
| UniProt, IsoForms | FASTA | http://beta.uniprot.org/downloads uniprot_sprot_varsplic.fasta.gz | Release 15.3 (May 26th 2009) |
| UniProt, SGD | Tab-delimited text file. | http://www.expasy.org/cgi-bin/lists?yeast.txt Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD | Release:57.3 (May 26th 2009) |
| UniProt, FLY | Tab-delimited text file. | http://www.expasy.org/cgi-bin/lists?fly.txt Drosophila: entries, gene names and cross-references to FlyBase. | Release: 57.3 (May 26th 2009) |
| NCBI, RefSeq | GenPept | ftp://ftp.ncbi.nih.gov/refseq/release/complete see *.protein.gpff.gz files | Release 35 (May 4th, 2009) |
| NCBI, MMDB/PDB | Tab-delimited text | ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/table | (Downloaded on May 14th, 2009) |
| NCBI, PDB sequences | FASTA | ftp://ftp.ncbi.nih.gov/blast/db/FASTA/pdbaa.gz | (Downloaded on May 14th, 2009) |
| NCBI Gene2Refseq | Tab-delimited text | ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ gene2refseq.gz | (Downloaded on May 14th, 2009) |
