Sources

Last edited: November 11th, 2008 Applies to iRefIndex release: 1.0, 1.1 and 2.0 Release date: November 11th, 2008 Authors: Ian Donaldson and Sabry Razick Database: iRefIndex (http://irefindex.uio.no) Organization: Biotechnology Centre of Oslo, University of Oslo (http://www.biotek.uio.no/)

Description:

This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.

Interaction related resources

Source	Format	Location	Version (date)
BIND,	Tab-delimited text file.	ftp://ftp.bind.ca/pub/BIND/data/bindflatfiles/bindindex/ 20050525.complex2refs.txt 20050525.ints.txt 20050525.refs.txt 20050525.complexes.txt 20050525.labels.txt 20050525.complex2subunits.txt These file are no longer available via ftp but are available from the authors. BIND archival content is now managed by Thomson Scientific. See http://bond.unleashedinformatics.com/	05/25/05
BioGRID	PSI-MI 2.5	http://www.thebiogrid.org/downloads.php BIOGRID-ORGANISM-2.0.38.psi25.zip	Version 2.0.38
DIP	PSI-MI 2.5	http://dip.doe-mbi.ucla.edu/dip/Download.cgi dip20080114.mif25.gz	01/14/08
HPRD,	PSI-MI 2.5	http://www.hprd.org/download/ HPRD_SINGLE_PSIMI_090107.xml.tar.gz	Release 7. September 1, 2007
IntAct,	PSI-MI 2.5	ftp://ftp.ebi.ac.uk/pub/databases/intact/2008-03-14/psi25/ pmidMIF25.zip	03/15/08
MINT	PSI-MI 2.5	ftp://mint.bio.uniroma2.it/pub/release/psi/2007-12-21/psi25/ full.psi25.zip	12/21/07
MPact	PSI-MI 2.5	ftp://ftpmips.gsf.de/yeast/PPI/ mpact-complete.psi25.xml	April 19, 2007
MPPI	PSI-MI 1.0	http://mips.gsf.de/proj/ppi/data/mppi.gz	Not available
OPHID	PSI-MI 1.0	http://ophid.utoronto.ca/ophid/downloads.html (This service no longer available, please refer to http://ophid.utoronto.ca/ophidv2.201/)	07/18/06