Difference between revisions of "Mapping of terms to MI term ids - iRefIndex 6.0"
(New page: In those cases where an interaction data record lists a term where a controlled vocabulary term is expected, and no controlled vocabulary term identifier is found, the term found in the re...) |
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These corrections are made in two cases. | These corrections are made in two cases. | ||
− | + | # For interaction types where no cv term id is listed. | |
− | + | # For interaction detection types where no cv term id is listed. | |
− | |||
The mappings used are shown below. Feedback (and corrections) by databases is welcome. ian.donaldson@biotek.uio.no | The mappings used are shown below. Feedback (and corrections) by databases is welcome. ian.donaldson@biotek.uio.no | ||
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Additional details are available at http://www.ebi.ac.uk/ontology-lookup/ | Additional details are available at http://www.ebi.ac.uk/ontology-lookup/ | ||
+ | These corrections are included in the iRefIndex MITAB files and they are used by the iRefWeb interface. | ||
==Interaction Type Terms== | ==Interaction Type Terms== | ||
Line 118: | Line 118: | ||
|} | |} | ||
+ | |||
+ | |||
+ | ==Interaction Detection Method Terms== | ||
+ | {| {{table}} | ||
+ | | align="center" style="background:#f0f0f0;"|'''term found in record''' | ||
+ | | align="center" style="background:#f0f0f0;"|'''curator-assigned term id''' | ||
+ | | align="center" style="background:#f0f0f0;"|'''assigned term''' | ||
+ | | align="center" style="background:#f0f0f0;"|'''notes''' | ||
+ | |- | ||
+ | | interaction detection method||MI:0001||interaction detection method||correct term, MI term id was missing | ||
+ | |- | ||
+ | | Affinity Capture-Luminescence||MI:0004||affinity chromatography technology||biogrids mapping | ||
+ | |- | ||
+ | | Affinity Capture-MS||MI:0004||affinity chromatography technology||biogrids mapping | ||
+ | |- | ||
+ | | Affinity Capture-RNA||MI:0004||affinity chromatography technology||biogrids mapping | ||
+ | |- | ||
+ | | Affinity Capture-Western||MI:0004||affinity chromatography technology||biogrids mapping | ||
+ | |- | ||
+ | | Affinity purification||MI:0004||affinity chromatography technology||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | LRET||MI:0012||bioluminescence resonance energy transfer||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | bacterial two-hybrid||MI:0014||adenylate cyclase complementation||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | two-hybrid-test||MI:0018||two hybrid||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | Gal4 transcription regeneration||MI:0018||two hybrid||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | immunoprecipitation||MI:0019||coimmunoprecipitation||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | Co-IP||MI:0019||coimmunoprecipitation||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | cosedimentation through density gradients||MI:0029||cosedimentation through density gradient||correct term, MI term id was missing | ||
+ | |- | ||
+ | | cross-linking studies||MI:0030||cross-linking study||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | cross-linking||MI:0030||cross-linking study||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | Label transfer techniques||MI:0031||protein cross-linking with a bifunctional reagent||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | Photoaffinity labelling||MI:0031||protein cross-linking with a bifunctional reagent||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | Electron cryomicroscopy||MI:0040||electron microscopy||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | Electron crystallography||MI:0040||electron microscopy||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | GTPase||MI:0419||gtpase assay||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | Affinity blotting||MI:0047||far western blotting||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | Far Western||MI:0047||far western blotting||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | far-western||MI:0047||far western blotting||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | Filter overlay assay||MI:0049||filter binding||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | fluorescence technologies||MI:0051||fluorescence technology||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | fluorescence-anisotropy||MI:0053||fluorescence polarization spectroscopy||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | FRET analysis||MI:0055||fluorescent resonance energy transfer||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | resonance-energy-transfer||MI:0055||fluorescent resonance energy transfer||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | RET||MI:0055||fluorescent resonance energy transfer||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | in silico methods||MI:0063||interaction prediction||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | mass-spectrometry||MI:0069||mass spectrometry studies of complexes||listed term was a partial match to this term, no MI term id was given - individual cases should be reviewed | ||
+ | |- | ||
+ | | Size Exclusion Chromatography||MI:0071||molecular sieving||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | Siezing column||MI:0071||molecular sieving||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | PCA||MI:0090||protein complementation assay||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | chromatography technologies||MI:0091||chromatography technology||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | column chromatography||MI:0091||chromatography technology||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | Reconstituted Complex||MI:0096||pull down||biogrids mapping | ||
+ | |- | ||
+ | | RIA Radio Immuno Assay||MI:0099||scintillation proximity assay||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | BIAcore[r]||MI:0107||surface plasmon resonance||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | Optical biosensor||MI:0107||surface plasmon resonance||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | immunoblotting||MI:0113||western blot||immunoblotting might be used as a method of interaction detection though it is usually a method for participant identification - cases should be reviewed individually | ||
+ | |- | ||
+ | | three-dimensional-structure||MI:0114||x-ray crystallography||though other methods might be used to define three dimensional structure, this seems to be the closest match | ||
+ | |- | ||
+ | | Dosage Growth Defect||MI:0254||genetic interference||biogrids mapping | ||
+ | |- | ||
+ | | Dosage Lethality||MI:0254||genetic interference||biogrids mapping | ||
+ | |- | ||
+ | | Dosage Rescue||MI:0254||genetic interference||biogrids mapping | ||
+ | |- | ||
+ | | Phenotypic Enhancement||MI:0254||genetic interference||biogrids mapping | ||
+ | |- | ||
+ | | Phenotypic Suppression||MI:0254||genetic interference||biogrids mapping | ||
+ | |- | ||
+ | | Synthetic Growth Defect||MI:0254||genetic interference||biogrids mapping | ||
+ | |- | ||
+ | | Synthetic Lethality||MI:0254||genetic interference||biogrids mapping | ||
+ | |- | ||
+ | | Synthetic Rescue||MI:0254||genetic interference||biogrids mapping | ||
+ | |- | ||
+ | | modeled by author||MI:0363||inferred by author||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | modelled by author||MI:0363||inferred by author||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | modeled by curator||MI:0364||inferred by curator||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | modelled by curator||MI:0364||inferred by curator||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | affinity technologies||MI:0400||affinity technology||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | Co-fractionation||MI:0401||biochemical||biogrids mapping | ||
+ | |- | ||
+ | | Co-purification||MI:0401||biochemical||biogrids mapping | ||
+ | |- | ||
+ | | colocalization by immunostaining||MI:0022||colocalization by immunostaining||correct term, MI term id was missing | ||
+ | |- | ||
+ | | elisa: enzyme-linked immunosorbent assay||MI:0411||enzyme linked immunosorbent assay||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | Gel retardation assay||MI:0413||electrophoretic mobility shift assay||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | band shift||MI:0413||electrophoretic mobility shift assay||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | gel-retardation-assays||MI:0413||electrophoretic mobility shift assay||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | microscopy||MI:0428||imaging technique||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | colocalization by fluorescent probes cloning||MI:0021||colocalization by fluorescent probes cloning||correct term, MI term id was missing | ||
+ | |- | ||
+ | | yeast one-hybrid||MI:0432||one hybrid||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | bridge assay||MI:0437||protein tri hybrid||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | trihybrid||MI:0437||protein tri hybrid||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | Synthetic Haploinsufficiency||MI:0254||genetic interference||biogrids mapping | ||
+ | |- | ||
+ | | homogeneous time-resolved fluo||MI:0510||homogeneous time resolved fluorescence||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | in vitro evolution of nucleic acids||MI:0657||systematic evolution of ligands by exponential enrichment||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | tap tag coimmunoprecipitation||MI:0676||tandem affinity purification||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | antigen capture assay||MI:0678||antibody array||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | interaction-adhesion-assay||MI:0686||unspecified method||cant find a resonable match to this term | ||
+ | |- | ||
+ | | Invivo||MI:0686||unspecified method||this is an obsolete term that is undefined so it is being mapped to \"unspecified method\" | ||
+ | |- | ||
+ | | Protein-RNA||MI:0686||unspecified method||biogrids mapping | ||
+ | |- | ||
+ | | transient-coexpression||MI:0686||unspecified method||cant find a resonable match to this term | ||
+ | |- | ||
+ | | in vivo||MI:0686||unspecified method||this is an obsolete term that is undefined so it is being mapped to \"unspecified method\" | ||
+ | |- | ||
+ | | NA||MI:0686||unspecified method||cant find a resonable match to this term | ||
+ | |- | ||
+ | | Protein-peptide||MI:0686||unspecified method||biogrids mapping | ||
+ | |- | ||
+ | | monoclonal-antibody-blockade||MI:0686||unspecified method||cant find a resonable match to this term | ||
+ | |- | ||
+ | | in vitro||MI:0686||unspecified method||this is an obsolete term that is undefined so it is being mapped to \"unspecified method\" | ||
+ | |- | ||
+ | | IEC||MI:0686||unspecified method||cant find a resonable match to this term | ||
+ | |- | ||
+ | | KISS||MI:0728||gal4 vp16 complementation||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | mammalian two hybrid||MI:0728||gal4 vp16 complementation||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | karyoplasmic interaction ion strategy||MI:0728||gal4 vp16 complementation||alternate label for this term was listed with no MI term id | ||
+ | |- | ||
+ | | autoradiography||MI:0833||autoradiography||this term does have a MI term id although it is difficuly to see that it would be a legitamate interaction detection method - cases should be reviewed individually | ||
+ | |- | ||
+ | | surface-plasmon-resonance-chip||MI:0921||surface plasmon resonance array||variation on a preferred term was listed with no MI term id (chip = array?) | ||
+ | |- | ||
+ | | deuterium-hydrogen-exchange||MI:0944||mass spectrometry study of hydrogen/deuterium exchange||mass spectrometry study of hydrogen/deuterium exchange | ||
+ | |- | ||
+ | | affinity chromatography technologies||MI:0004||affinity chromatography technology||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | affinity chromatography technology||MI:0004||affinity chromatography technology||correct term, MI term id was missing | ||
+ | |- | ||
+ | | affinity-chromatography||MI:0004||affinity chromatography technology||variation on preferred term was listed with no MI term id | ||
+ | |- | ||
+ | | anti bait coimmunoprecipitation||MI:0006||anti bait coimmunoprecipitation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | anti tag coimmunoprecipitation||MI:0007||anti tag coimmunoprecipitation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | beta galactosidase complementation||MI:0010||beta galactosidase complementation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | beta lactamase complementation||MI:0011||beta lactamase complementation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | bioluminescence resonance energy transfer||MI:0012||bioluminescence resonance energy transfer||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | adenylate cyclase complementation||MI:0014||adenylate cyclase complementation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | circular dichroism||MI:0016||circular dichroism||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | classical fluorescence spectroscopy||MI:0017||classical fluorescence spectroscopy||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | 2-hybrid||MI:0018||two hybrid||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | classical two hybrid||MI:0018||two hybrid||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | Two-hybrid||MI:0018||two hybrid||no cv term id given - mapping ok - used biogrids mapping | ||
+ | |- | ||
+ | | yeast two hybrid||MI:0018||two hybrid||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | co-immunoprecipitation||MI:0019||coimmunoprecipitation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | coimmunoprecipitation||MI:0019||coimmunoprecipitation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | coip: coimmunoprecipitation||MI:0019||coimmunoprecipitation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | transmission electron microscopy||MI:0020||transmission electron microscopy||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | cosedimentation in solution||MI:0028||cosedimentation in solution||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | cosedimentation through density gradient||MI:0029||cosedimentation through density gradient||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | sucrose-gradient-sedimentation||MI:0029||density sedimentatio||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | cross-linking study||MI:0030||cross-linking study||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | protein cross-linking with a bifunctional reagent||MI:0031||protein cross-linking with a bifunctional reagent||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | dynamic light scattering||MI:0038||dynamic light scattering||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | electron-microscopy||MI:0040||electron microscopy||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | electron paramagnetic resonance||MI:0042||electron paramagnetic resonance||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | ESR||MI:0042||electron paramagnetic resonance||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | electron resonance||MI:0043||electron resonance||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | electron-spin-resonance||MI:0043||electron resonance||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | experimental interaction detection||MI:0045||experimental interaction detection||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | experimental knowledge based||MI:0046||experimental info||no cv term id given - auto-mapping ok - this is the preferred term for this | ||
+ | |- | ||
+ | | filamentous phage display||MI:0048||filamentous phage display||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | fluorescence technology||MI:0051||fluorescence technology||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | fluorescence correlation spectroscopy||MI:0052||fluorescence correlation spectroscopy||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | Fluorescence anisotropy||MI:0053||fluorescence polarization spectroscopy||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | fluorescence polarization spectroscopy||MI:0053||fluorescence polarization spectroscopy||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | Flow cytometry||MI:0054||fluorescence-activated cell sorting||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | fluorescence-activated cell sorting||MI:0054||fluorescence-activated cell sorting||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | fluorescent resonance energy transfer||MI:0055||fluorescent resonance energy transfer||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | interaction prediction||MI:0063||interaction prediction||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | isothermal titration calorimetry||MI:0065||isothermal titration calorimetry||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | lambda phage display||MI:0066||lambda phage display||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | light-scattering||MI:0067||light scattering||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | mass spectrometry studies of complexes||MI:0069||mass spectrometry studies of complexes||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | equilibrium-dialysis||MI:0071||molecular sieving||no cv term id given - manual-mapping ok - individual cases should be reviewed | ||
+ | |- | ||
+ | | Gel Filtration||MI:0071||molecular sieving||no cv term id given - manual-mapping ok - individual cases should be reviewed | ||
+ | |- | ||
+ | | gel-filtration-chromatography||MI:0071||molecular sieving||no cv term id given - manual-mapping ok - individual cases should be reviewed | ||
+ | |- | ||
+ | | membrane-filtration||MI:0071||molecular sieving||no cv term id given - manual-mapping ok - individual cases should be reviewed | ||
+ | |- | ||
+ | | nuclear magnetic resonance||MI:0077||nuclear magnetic resonance||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | hybridization||MI:0079||other biochemic tech||no cv term id given - auto-mapping ok - individual cases should be reviewed | ||
+ | |- | ||
+ | | phage-display||MI:0084||phage display||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | protein complementation assay||MI:0090||protein complementation assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | chromatography technology||MI:0091||chromatography technology||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | reverse ras recruitment system||MI:0097||reverse ras recruitment system||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | scintillation proximity assay||MI:0099||scintillation proximity assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | static light scattering||MI:0104||static light scattering||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | surface plasmon resonance||MI:0107||surface plasmon resonance||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | t7 phage display||MI:0108||t7 phage display||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | dihydrofolate reductase reconstruction||MI:0111||dihydrofolate reductase reconstruction||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | ubiquitin reconstruction||MI:0112||ubiquitin reconstruction||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | Co-crystal Structure||MI:0114||x-ray||no cv term id given - manual-mapping ok - using biogrids mapping | ||
+ | |- | ||
+ | | x-ray crystallography||MI:0114||x-ray crystallography||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | x-ray: x-ray crystallography||MI:0114||x-ray crystallography||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | ion exchange chromatography||MI:0226||ion exchange chromatography||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | reverse phase chromatography||MI:0227||reverse phase chromatography||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | green fluorescence protein complementation assay||MI:0229||green fluorescence protein complementation assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | mammalian protein protein interaction trap||MI:0231||mammalian protein protein interaction trap||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | transcriptional complementation assay||MI:0232||transcriptional complementation assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | blue native page||MI:0276||blue native page||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | lex-a dimerization assay||MI:0369||lex-a dimerization assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | tox-r dimerization assay||MI:0370||tox-r dimerization assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | two hybrid pooling approach||MI:0398||two hybrid pooling approach||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | two hybrid fragment pooling approach||MI:0399||two hybrid fragment pooling approach||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | affinity technology||MI:0400||affinity technology||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | chromatin immunoprecipitation assays||MI:0402||chromatin immunoprecipitation assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | comigration in non denaturing gel electrophoresis||MI:0404||comigration in non denaturing gel electrophoresis||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | competition-binding||MI:0405||competition binding||no cv term id given - manual-mapping ok | ||
+ | |- | ||
+ | | electron tomography||MI:0410||electron tomography||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | enzyme linked immunosorbent assay||MI:0411||enzyme linked immunosorbent assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | electrophoretic mobility supershift assay||MI:0412||electrophoretic mobility supershift assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | electrophoretic mobility shift assay||MI:0413||electrophoretic mobility shift assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | Biochemical Activity||MI:0415||enzymatic studies||no cv term id given - manual-mapping ok - using biogrids mapping | ||
+ | |- | ||
+ | | fluorescence microscopy||MI:0416||fluorescence microscopy||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | gtp hydrolisis||MI:0419||gtpase assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | kinase homogeneous time resolved fluorescence||MI:0420||kinase homogeneous time resolved fluorescence||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | in-gel kinase assay||MI:0423||in-gel kinase assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | kinase scintillation proximity assay||MI:0425||kinase scintillation proximity assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | Co-localization||MI:0428||imaging techniques||no cv term id given - manual-mapping ok - using biogrids mapping | ||
+ | |- | ||
+ | | coloc by immunost||MI:0428||imaging techniques||no cv term id given - manual-mapping ok | ||
+ | |- | ||
+ | | coloc by immunost.||MI:0428||imaging techniques||no cv term id given - manual-mapping ok | ||
+ | |- | ||
+ | | colocalization||MI:0428||imaging techniques||no cv term id given - manual-mapping ok | ||
+ | |- | ||
+ | | colocalization/visualisation technologies||MI:0428||imaging techniques||no cv term id given - manual-mapping ok | ||
+ | |- | ||
+ | | immunostaining||MI:0428||imaging techniques||no cv term id given - manual-mapping ok | ||
+ | |- | ||
+ | | one-hybrid||MI:0432||one hybrid||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | yeast one hybrid||MI:0432||one hybrid||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | homogeneous time resolved fluorescence||MI:0510||homogeneous time resolved fluorescence||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | homogeneous time-resolved fluorescence||MI:0510|| ||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | methyltransferase assay||MI:0515||methyltransferase assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | methyltransferase radiometric assay||MI:0516||methyltransferase radiometric assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | enzymatic footprinting||MI:0605||enzymatic footprinting||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | lambda repressor two hybrid||MI:0655||lambda repressor two hybrid||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | systematic evolution of ligands by exponential enrichment||MI:0657||systematic evolution of ligands by exponential enrichment||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | tandem affinity purification||MI:0676||tandem affinity purification||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | not-specified||MI:0686||unspecified||no cv term id given - manual-mapping ok | ||
+ | |- | ||
+ | | other||MI:0686||unspecified||no cv term id given - manual-mapping ok | ||
+ | |- | ||
+ | | sandwich immunoassay||MI:0695||sandwich immunoassay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | dna directed dna polymerase assay||MI:0697||dna directed dna polymerase assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | rna directed rna polymerase assay||MI:0700||rna directed rna polymerase assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | gal4 vp16 complementation||MI:0728||gal4 vp16 complementation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | comigration in gel electrophoresis||MI:0807||comigration in gel electrophoresis||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | comigration in sds page||MI:0808||comigration in sds page||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | bimolecular fluorescence complementation||MI:0809||bimolecular fluorescence complementation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | protease accessibility laddering||MI:0814||protease accessibility laddering||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | x-ray fiber diffraction||MI:0825||x-ray fiber diffraction||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | x ray scattering||MI:0826||x ray scattering||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | phosphotransfer assay||MI:0841||phosphotransfer assay||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | immunodepleted coimmunoprecipitation||MI:0858||immunodepleted coimmunoprecipitation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | immunodepleted coip||MI:0858||immunodepleted coimmunoprecipitation||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | intermolecular force||MI:0859||intermolecular force||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | atomic force microscopy||MI:0872||atomic force microscopy||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | atomic-force-microscopy||MI:0872||AFM||no cv term id given - manual-mapping ok | ||
+ | |- | ||
+ | | neutron diffraction||MI:0893||neutron diffraction||no cv term id given - auto-mapping ok | ||
+ | |- | ||
+ | | | ||
+ | |} | ||
== All iRefIndex Pages == | == All iRefIndex Pages == |
Latest revision as of 12:50, 7 April 2011
In those cases where an interaction data record lists a term where a controlled vocabulary term is expected, and no controlled vocabulary term identifier is found, the term found in the record will be mapped by a curator to the closest possible term identifier using the molecular interaction ontology.
These corrections are made in two cases.
- For interaction types where no cv term id is listed.
- For interaction detection types where no cv term id is listed.
The mappings used are shown below. Feedback (and corrections) by databases is welcome. ian.donaldson@biotek.uio.no
These mappings are reviewed from one release to another.
Additional details are available at http://www.ebi.ac.uk/ontology-lookup/
These corrections are included in the iRefIndex MITAB files and they are used by the iRefWeb interface.
Interaction Type Terms
term found in record | curator-assigned term id | assigned term | notes |
Co-fractionation | MI:0403 | colocalization | Interaction detection method name used inappropriately as a interaction type name |
Affinity Capture-Western | MI:0914 | association | Interaction detection method name used inappropriately as a interaction type name |
Dosage Rescue | MI:0796 | suppressive genetic interaction defined by inequality | Interaction detection method name used inappropriately as a interaction type name - assuming that the rescuing background had WT phenotype |
Synthetic Rescue | MI:0796 | suppressive genetic interaction defined by inequality | Interaction detection method name used inappropriately as a interaction type name - assuming that the rescuing background had WT phenotype |
Synthetic Lethality | MI:0794 | synthetic genetic interaction defined by inequality | Interaction detection method name used inappropriately as a interaction type name - assuming that the a and b background had WT phenotype |
Synthetic Growth Defect | MI:0794 | synthetic genetic interaction defined by inequality | Interaction detection method name used inappropriately as a interaction type name - assuming that the a and b background had WT phenotype |
Dosage Lethality | MI:0794 | synthetic genetic interaction defined by inequality | Interaction detection method name used inappropriately as a interaction type name - assuming that the a and b background had WT phenotype |
Phenotypic Enhancement | MI:0799 | synthetic genetic interaction defined by inequality | Interaction detection method name used inappropriately as a interaction type name - assuming that enhancing b background had WT phenotype |
Phenotypic Suppression | MI:0796 | suppressive genetic interaction defined by inequality | Interaction detection method name used inappropriately as a interaction type name - here it is difficult to say what the inequality between a, b, ab and WT is. |
Dosage Growth Defect | MI:0931 | genetic interaction defined by inequality | Interaction detection method name used inappropriately as a interaction type name - here i am assuming that the rescuing b background had WT phenotype |
Affinity Capture-MS | MI:0914 | association | Interaction detection method name used inappropriately as a interaction type name |
Co-crystal Structure | MI:0915 | physical association | Interaction detection method name used inappropriately as a interaction type name |
Co-purification | MI:0914 | association | Interaction detection method name used inappropriately as a interaction type name |
Affinity Capture-Luminescence | MI:0914 | association | Interaction detection method name used inappropriately as a interaction type name |
Affinity Capture-RNA | MI:0914 | association | Interaction detection method name used inappropriately as a interaction type name |
Synthetic Haploinsufficiency | MI:0208 | genetic interaction | Interaction detection method name used inappropriately as a interaction type name |
DNA replication elongation | MI:0190 | interaction type? | Impossible to map. These examples should be looked at. Map to root term for interaction type. |
FRET | MI:0914 | association | Interaction detection method name used inappropriately as a interaction type name |
PCA | MI:0915 | physical association | 99% of the time when 2 hybrid is the method, the database will list the interaction as MI:0915 (physical interaction) |
Two-hybrid | MI:0915 | physical association | 99% of the time when 2 hybrid is the method, the database will list the interaction as MI:0915 (physical interaction) |
Co-localization | MI:0403 | colocalization | Interaction detection method name used inappropriately as a interaction type name |
Reconstituted Complex | MI:0915 | physical association | |
Biochemical Activity | MI:0915 | physical association? | Individual examples should be reviewed |
Protein-peptide | MI:0407 | direct interaction | |
Protein-RNA | MI:0915 | physical association | |
Biochemical reaction | MI:0915 | physical association? | Individual examples should be reviewed |
covalent interaction | MI:0195 | direct interaction | |
Far Western | MI:0407 | direct interaction | Depends how the experiment was done. Individual cases should be examined. Interaction detection method name used inappropriately as a interaction type name |
phosphorylation reaction | MI:0217 | phosphorylation reaction | Correct term. MI term id was simply missing |
dna strand elongation | MI:0701 | dna strand elongation | Correct term. MI term id was simply missing |
methylation reaction | MI:0213 | methylation reaction | Correct term. MI term id was simply missing |
dephosphorylation reaction | MI:0203 | dephosphorylation reaction | Correct term. MI term id was simply missing |
demethylation reaction | MI:0871 | demethylation reaction | Correct term. MI term id was simply missing |
acetylation reaction | MI:0192 | acetylation reaction | Correct term. MI term id was simply missing |
ubiquitination reaction | MI:0220 | ubiquitination reaction | Correct term. MI term id was simply missing |
cleavage reaction | MI:0194 | cleavage reaction | Correct term. MI term id was simply missing |
deacetylation reaction | MI:0197 | deacetylation reaction | Correct term. MI term id was simply missing |
adp ribosylation reaction | MI:0557 | adp ribosylation reaction | Correct term. MI term id was simply missing |
sumoylation reaction | MI:0566 | sumoylation reaction | Correct term. MI term id was simply missing |
phosphotransfer reaction | MI:0844 | phosphotransfer reaction | Correct term. MI term id was simply missing |
neddylation reaction | MI:0567 | neddylation reaction | Correct term. MI term id was simply missing |
palmitoylation reaction | MI:0216 | palmitoylation reaction | Correct term. MI term id was simply missing |
deneddylation reaction | MI:0569 | deneddylation reaction | Correct term. MI term id was simply missing |
deubiquitination reaction | MI:0204 | deubiquitination reaction | Correct term. MI term id was simply missing |
glycosylation reaction | MI:0559 | glycosylation reaction | Correct term. MI term id was simply missing |
hydroxylation reaction | MI:0210 | hydroxylation reaction | Correct term. MI term id was simply missing |
amidation reaction | MI:0193 | amidation reaction | Correct term. MI term id was simply missing |
Interaction Detection Method Terms
term found in record | curator-assigned term id | assigned term | notes |
interaction detection method | MI:0001 | interaction detection method | correct term, MI term id was missing |
Affinity Capture-Luminescence | MI:0004 | affinity chromatography technology | biogrids mapping |
Affinity Capture-MS | MI:0004 | affinity chromatography technology | biogrids mapping |
Affinity Capture-RNA | MI:0004 | affinity chromatography technology | biogrids mapping |
Affinity Capture-Western | MI:0004 | affinity chromatography technology | biogrids mapping |
Affinity purification | MI:0004 | affinity chromatography technology | alternate label for this term was listed with no MI term id |
LRET | MI:0012 | bioluminescence resonance energy transfer | alternate label for this term was listed with no MI term id |
bacterial two-hybrid | MI:0014 | adenylate cyclase complementation | alternate label for this term was listed with no MI term id |
two-hybrid-test | MI:0018 | two hybrid | variation on preferred term was listed with no MI term id |
Gal4 transcription regeneration | MI:0018 | two hybrid | alternate label for this term was listed with no MI term id |
immunoprecipitation | MI:0019 | coimmunoprecipitation | alternate label for this term was listed with no MI term id |
Co-IP | MI:0019 | coimmunoprecipitation | alternate label for this term was listed with no MI term id |
cosedimentation through density gradients | MI:0029 | cosedimentation through density gradient | correct term, MI term id was missing |
cross-linking studies | MI:0030 | cross-linking study | variation on preferred term was listed with no MI term id |
cross-linking | MI:0030 | cross-linking study | variation on preferred term was listed with no MI term id |
Label transfer techniques | MI:0031 | protein cross-linking with a bifunctional reagent | alternate label for this term was listed with no MI term id |
Photoaffinity labelling | MI:0031 | protein cross-linking with a bifunctional reagent | alternate label for this term was listed with no MI term id |
Electron cryomicroscopy | MI:0040 | electron microscopy | alternate label for this term was listed with no MI term id |
Electron crystallography | MI:0040 | electron microscopy | alternate label for this term was listed with no MI term id |
GTPase | MI:0419 | gtpase assay | variation on preferred term was listed with no MI term id |
Affinity blotting | MI:0047 | far western blotting | alternate label for this term was listed with no MI term id |
Far Western | MI:0047 | far western blotting | variation on preferred term was listed with no MI term id |
far-western | MI:0047 | far western blotting | variation on preferred term was listed with no MI term id |
Filter overlay assay | MI:0049 | filter binding | alternate label for this term was listed with no MI term id |
fluorescence technologies | MI:0051 | fluorescence technology | variation on preferred term was listed with no MI term id |
fluorescence-anisotropy | MI:0053 | fluorescence polarization spectroscopy | variation on preferred term was listed with no MI term id |
FRET analysis | MI:0055 | fluorescent resonance energy transfer | alternate label for this term was listed with no MI term id |
resonance-energy-transfer | MI:0055 | fluorescent resonance energy transfer | variation on preferred term was listed with no MI term id |
RET | MI:0055 | fluorescent resonance energy transfer | alternate label for this term was listed with no MI term id |
in silico methods | MI:0063 | interaction prediction | alternate label for this term was listed with no MI term id |
mass-spectrometry | MI:0069 | mass spectrometry studies of complexes | listed term was a partial match to this term, no MI term id was given - individual cases should be reviewed |
Size Exclusion Chromatography | MI:0071 | molecular sieving | alternate label for this term was listed with no MI term id |
Siezing column | MI:0071 | molecular sieving | alternate label for this term was listed with no MI term id |
PCA | MI:0090 | protein complementation assay | alternate label for this term was listed with no MI term id |
chromatography technologies | MI:0091 | chromatography technology | variation on preferred term was listed with no MI term id |
column chromatography | MI:0091 | chromatography technology | alternate label for this term was listed with no MI term id |
Reconstituted Complex | MI:0096 | pull down | biogrids mapping |
RIA Radio Immuno Assay | MI:0099 | scintillation proximity assay | alternate label for this term was listed with no MI term id |
BIAcore[r] | MI:0107 | surface plasmon resonance | alternate label for this term was listed with no MI term id |
Optical biosensor | MI:0107 | surface plasmon resonance | alternate label for this term was listed with no MI term id |
immunoblotting | MI:0113 | western blot | immunoblotting might be used as a method of interaction detection though it is usually a method for participant identification - cases should be reviewed individually |
three-dimensional-structure | MI:0114 | x-ray crystallography | though other methods might be used to define three dimensional structure, this seems to be the closest match |
Dosage Growth Defect | MI:0254 | genetic interference | biogrids mapping |
Dosage Lethality | MI:0254 | genetic interference | biogrids mapping |
Dosage Rescue | MI:0254 | genetic interference | biogrids mapping |
Phenotypic Enhancement | MI:0254 | genetic interference | biogrids mapping |
Phenotypic Suppression | MI:0254 | genetic interference | biogrids mapping |
Synthetic Growth Defect | MI:0254 | genetic interference | biogrids mapping |
Synthetic Lethality | MI:0254 | genetic interference | biogrids mapping |
Synthetic Rescue | MI:0254 | genetic interference | biogrids mapping |
modeled by author | MI:0363 | inferred by author | alternate label for this term was listed with no MI term id |
modelled by author | MI:0363 | inferred by author | alternate label for this term was listed with no MI term id |
modeled by curator | MI:0364 | inferred by curator | alternate label for this term was listed with no MI term id |
modelled by curator | MI:0364 | inferred by curator | alternate label for this term was listed with no MI term id |
affinity technologies | MI:0400 | affinity technology | variation on preferred term was listed with no MI term id |
Co-fractionation | MI:0401 | biochemical | biogrids mapping |
Co-purification | MI:0401 | biochemical | biogrids mapping |
colocalization by immunostaining | MI:0022 | colocalization by immunostaining | correct term, MI term id was missing |
elisa: enzyme-linked immunosorbent assay | MI:0411 | enzyme linked immunosorbent assay | variation on preferred term was listed with no MI term id |
Gel retardation assay | MI:0413 | electrophoretic mobility shift assay | alternate label for this term was listed with no MI term id |
band shift | MI:0413 | electrophoretic mobility shift assay | alternate label for this term was listed with no MI term id |
gel-retardation-assays | MI:0413 | electrophoretic mobility shift assay | variation on preferred term was listed with no MI term id |
microscopy | MI:0428 | imaging technique | alternate label for this term was listed with no MI term id |
colocalization by fluorescent probes cloning | MI:0021 | colocalization by fluorescent probes cloning | correct term, MI term id was missing |
yeast one-hybrid | MI:0432 | one hybrid | alternate label for this term was listed with no MI term id |
bridge assay | MI:0437 | protein tri hybrid | alternate label for this term was listed with no MI term id |
trihybrid | MI:0437 | protein tri hybrid | alternate label for this term was listed with no MI term id |
Synthetic Haploinsufficiency | MI:0254 | genetic interference | biogrids mapping |
homogeneous time-resolved fluo | MI:0510 | homogeneous time resolved fluorescence | variation on preferred term was listed with no MI term id |
in vitro evolution of nucleic acids | MI:0657 | systematic evolution of ligands by exponential enrichment | alternate label for this term was listed with no MI term id |
tap tag coimmunoprecipitation | MI:0676 | tandem affinity purification | variation on preferred term was listed with no MI term id |
antigen capture assay | MI:0678 | antibody array | alternate label for this term was listed with no MI term id |
interaction-adhesion-assay | MI:0686 | unspecified method | cant find a resonable match to this term |
Invivo | MI:0686 | unspecified method | this is an obsolete term that is undefined so it is being mapped to \"unspecified method\" |
Protein-RNA | MI:0686 | unspecified method | biogrids mapping |
transient-coexpression | MI:0686 | unspecified method | cant find a resonable match to this term |
in vivo | MI:0686 | unspecified method | this is an obsolete term that is undefined so it is being mapped to \"unspecified method\" |
NA | MI:0686 | unspecified method | cant find a resonable match to this term |
Protein-peptide | MI:0686 | unspecified method | biogrids mapping |
monoclonal-antibody-blockade | MI:0686 | unspecified method | cant find a resonable match to this term |
in vitro | MI:0686 | unspecified method | this is an obsolete term that is undefined so it is being mapped to \"unspecified method\" |
IEC | MI:0686 | unspecified method | cant find a resonable match to this term |
KISS | MI:0728 | gal4 vp16 complementation | alternate label for this term was listed with no MI term id |
mammalian two hybrid | MI:0728 | gal4 vp16 complementation | alternate label for this term was listed with no MI term id |
karyoplasmic interaction ion strategy | MI:0728 | gal4 vp16 complementation | alternate label for this term was listed with no MI term id |
autoradiography | MI:0833 | autoradiography | this term does have a MI term id although it is difficuly to see that it would be a legitamate interaction detection method - cases should be reviewed individually |
surface-plasmon-resonance-chip | MI:0921 | surface plasmon resonance array | variation on a preferred term was listed with no MI term id (chip = array?) |
deuterium-hydrogen-exchange | MI:0944 | mass spectrometry study of hydrogen/deuterium exchange | mass spectrometry study of hydrogen/deuterium exchange |
affinity chromatography technologies | MI:0004 | affinity chromatography technology | variation on preferred term was listed with no MI term id |
affinity chromatography technology | MI:0004 | affinity chromatography technology | correct term, MI term id was missing |
affinity-chromatography | MI:0004 | affinity chromatography technology | variation on preferred term was listed with no MI term id |
anti bait coimmunoprecipitation | MI:0006 | anti bait coimmunoprecipitation | no cv term id given - auto-mapping ok |
anti tag coimmunoprecipitation | MI:0007 | anti tag coimmunoprecipitation | no cv term id given - auto-mapping ok |
beta galactosidase complementation | MI:0010 | beta galactosidase complementation | no cv term id given - auto-mapping ok |
beta lactamase complementation | MI:0011 | beta lactamase complementation | no cv term id given - auto-mapping ok |
bioluminescence resonance energy transfer | MI:0012 | bioluminescence resonance energy transfer | no cv term id given - auto-mapping ok |
adenylate cyclase complementation | MI:0014 | adenylate cyclase complementation | no cv term id given - auto-mapping ok |
circular dichroism | MI:0016 | circular dichroism | no cv term id given - auto-mapping ok |
classical fluorescence spectroscopy | MI:0017 | classical fluorescence spectroscopy | no cv term id given - auto-mapping ok |
2-hybrid | MI:0018 | two hybrid | no cv term id given - auto-mapping ok |
classical two hybrid | MI:0018 | two hybrid | no cv term id given - auto-mapping ok |
Two-hybrid | MI:0018 | two hybrid | no cv term id given - mapping ok - used biogrids mapping |
yeast two hybrid | MI:0018 | two hybrid | no cv term id given - auto-mapping ok |
co-immunoprecipitation | MI:0019 | coimmunoprecipitation | no cv term id given - auto-mapping ok |
coimmunoprecipitation | MI:0019 | coimmunoprecipitation | no cv term id given - auto-mapping ok |
coip: coimmunoprecipitation | MI:0019 | coimmunoprecipitation | no cv term id given - auto-mapping ok |
transmission electron microscopy | MI:0020 | transmission electron microscopy | no cv term id given - auto-mapping ok |
cosedimentation in solution | MI:0028 | cosedimentation in solution | no cv term id given - auto-mapping ok |
cosedimentation through density gradient | MI:0029 | cosedimentation through density gradient | no cv term id given - auto-mapping ok |
sucrose-gradient-sedimentation | MI:0029 | density sedimentatio | no cv term id given - auto-mapping ok |
cross-linking study | MI:0030 | cross-linking study | no cv term id given - auto-mapping ok |
protein cross-linking with a bifunctional reagent | MI:0031 | protein cross-linking with a bifunctional reagent | no cv term id given - auto-mapping ok |
dynamic light scattering | MI:0038 | dynamic light scattering | no cv term id given - auto-mapping ok |
electron-microscopy | MI:0040 | electron microscopy | no cv term id given - auto-mapping ok |
electron paramagnetic resonance | MI:0042 | electron paramagnetic resonance | no cv term id given - auto-mapping ok |
ESR | MI:0042 | electron paramagnetic resonance | no cv term id given - auto-mapping ok |
electron resonance | MI:0043 | electron resonance | no cv term id given - auto-mapping ok |
electron-spin-resonance | MI:0043 | electron resonance | no cv term id given - auto-mapping ok |
experimental interaction detection | MI:0045 | experimental interaction detection | no cv term id given - auto-mapping ok |
experimental knowledge based | MI:0046 | experimental info | no cv term id given - auto-mapping ok - this is the preferred term for this |
filamentous phage display | MI:0048 | filamentous phage display | no cv term id given - auto-mapping ok |
fluorescence technology | MI:0051 | fluorescence technology | no cv term id given - auto-mapping ok |
fluorescence correlation spectroscopy | MI:0052 | fluorescence correlation spectroscopy | no cv term id given - auto-mapping ok |
Fluorescence anisotropy | MI:0053 | fluorescence polarization spectroscopy | no cv term id given - auto-mapping ok |
fluorescence polarization spectroscopy | MI:0053 | fluorescence polarization spectroscopy | no cv term id given - auto-mapping ok |
Flow cytometry | MI:0054 | fluorescence-activated cell sorting | no cv term id given - auto-mapping ok |
fluorescence-activated cell sorting | MI:0054 | fluorescence-activated cell sorting | no cv term id given - auto-mapping ok |
fluorescent resonance energy transfer | MI:0055 | fluorescent resonance energy transfer | no cv term id given - auto-mapping ok |
interaction prediction | MI:0063 | interaction prediction | no cv term id given - auto-mapping ok |
isothermal titration calorimetry | MI:0065 | isothermal titration calorimetry | no cv term id given - auto-mapping ok |
lambda phage display | MI:0066 | lambda phage display | no cv term id given - auto-mapping ok |
light-scattering | MI:0067 | light scattering | no cv term id given - auto-mapping ok |
mass spectrometry studies of complexes | MI:0069 | mass spectrometry studies of complexes | no cv term id given - auto-mapping ok |
equilibrium-dialysis | MI:0071 | molecular sieving | no cv term id given - manual-mapping ok - individual cases should be reviewed |
Gel Filtration | MI:0071 | molecular sieving | no cv term id given - manual-mapping ok - individual cases should be reviewed |
gel-filtration-chromatography | MI:0071 | molecular sieving | no cv term id given - manual-mapping ok - individual cases should be reviewed |
membrane-filtration | MI:0071 | molecular sieving | no cv term id given - manual-mapping ok - individual cases should be reviewed |
nuclear magnetic resonance | MI:0077 | nuclear magnetic resonance | no cv term id given - auto-mapping ok |
hybridization | MI:0079 | other biochemic tech | no cv term id given - auto-mapping ok - individual cases should be reviewed |
phage-display | MI:0084 | phage display | no cv term id given - auto-mapping ok |
protein complementation assay | MI:0090 | protein complementation assay | no cv term id given - auto-mapping ok |
chromatography technology | MI:0091 | chromatography technology | no cv term id given - auto-mapping ok |
reverse ras recruitment system | MI:0097 | reverse ras recruitment system | no cv term id given - auto-mapping ok |
scintillation proximity assay | MI:0099 | scintillation proximity assay | no cv term id given - auto-mapping ok |
static light scattering | MI:0104 | static light scattering | no cv term id given - auto-mapping ok |
surface plasmon resonance | MI:0107 | surface plasmon resonance | no cv term id given - auto-mapping ok |
t7 phage display | MI:0108 | t7 phage display | no cv term id given - auto-mapping ok |
dihydrofolate reductase reconstruction | MI:0111 | dihydrofolate reductase reconstruction | no cv term id given - auto-mapping ok |
ubiquitin reconstruction | MI:0112 | ubiquitin reconstruction | no cv term id given - auto-mapping ok |
Co-crystal Structure | MI:0114 | x-ray | no cv term id given - manual-mapping ok - using biogrids mapping |
x-ray crystallography | MI:0114 | x-ray crystallography | no cv term id given - auto-mapping ok |
x-ray: x-ray crystallography | MI:0114 | x-ray crystallography | no cv term id given - auto-mapping ok |
ion exchange chromatography | MI:0226 | ion exchange chromatography | no cv term id given - auto-mapping ok |
reverse phase chromatography | MI:0227 | reverse phase chromatography | no cv term id given - auto-mapping ok |
green fluorescence protein complementation assay | MI:0229 | green fluorescence protein complementation assay | no cv term id given - auto-mapping ok |
mammalian protein protein interaction trap | MI:0231 | mammalian protein protein interaction trap | no cv term id given - auto-mapping ok |
transcriptional complementation assay | MI:0232 | transcriptional complementation assay | no cv term id given - auto-mapping ok |
blue native page | MI:0276 | blue native page | no cv term id given - auto-mapping ok |
lex-a dimerization assay | MI:0369 | lex-a dimerization assay | no cv term id given - auto-mapping ok |
tox-r dimerization assay | MI:0370 | tox-r dimerization assay | no cv term id given - auto-mapping ok |
two hybrid pooling approach | MI:0398 | two hybrid pooling approach | no cv term id given - auto-mapping ok |
two hybrid fragment pooling approach | MI:0399 | two hybrid fragment pooling approach | no cv term id given - auto-mapping ok |
affinity technology | MI:0400 | affinity technology | no cv term id given - auto-mapping ok |
chromatin immunoprecipitation assays | MI:0402 | chromatin immunoprecipitation assay | no cv term id given - auto-mapping ok |
comigration in non denaturing gel electrophoresis | MI:0404 | comigration in non denaturing gel electrophoresis | no cv term id given - auto-mapping ok |
competition-binding | MI:0405 | competition binding | no cv term id given - manual-mapping ok |
electron tomography | MI:0410 | electron tomography | no cv term id given - auto-mapping ok |
enzyme linked immunosorbent assay | MI:0411 | enzyme linked immunosorbent assay | no cv term id given - auto-mapping ok |
electrophoretic mobility supershift assay | MI:0412 | electrophoretic mobility supershift assay | no cv term id given - auto-mapping ok |
electrophoretic mobility shift assay | MI:0413 | electrophoretic mobility shift assay | no cv term id given - auto-mapping ok |
Biochemical Activity | MI:0415 | enzymatic studies | no cv term id given - manual-mapping ok - using biogrids mapping |
fluorescence microscopy | MI:0416 | fluorescence microscopy | no cv term id given - auto-mapping ok |
gtp hydrolisis | MI:0419 | gtpase assay | no cv term id given - auto-mapping ok |
kinase homogeneous time resolved fluorescence | MI:0420 | kinase homogeneous time resolved fluorescence | no cv term id given - auto-mapping ok |
in-gel kinase assay | MI:0423 | in-gel kinase assay | no cv term id given - auto-mapping ok |
kinase scintillation proximity assay | MI:0425 | kinase scintillation proximity assay | no cv term id given - auto-mapping ok |
Co-localization | MI:0428 | imaging techniques | no cv term id given - manual-mapping ok - using biogrids mapping |
coloc by immunost | MI:0428 | imaging techniques | no cv term id given - manual-mapping ok |
coloc by immunost. | MI:0428 | imaging techniques | no cv term id given - manual-mapping ok |
colocalization | MI:0428 | imaging techniques | no cv term id given - manual-mapping ok |
colocalization/visualisation technologies | MI:0428 | imaging techniques | no cv term id given - manual-mapping ok |
immunostaining | MI:0428 | imaging techniques | no cv term id given - manual-mapping ok |
one-hybrid | MI:0432 | one hybrid | no cv term id given - auto-mapping ok |
yeast one hybrid | MI:0432 | one hybrid | no cv term id given - auto-mapping ok |
homogeneous time resolved fluorescence | MI:0510 | homogeneous time resolved fluorescence | no cv term id given - auto-mapping ok |
homogeneous time-resolved fluorescence | MI:0510 | no cv term id given - auto-mapping ok | |
methyltransferase assay | MI:0515 | methyltransferase assay | no cv term id given - auto-mapping ok |
methyltransferase radiometric assay | MI:0516 | methyltransferase radiometric assay | no cv term id given - auto-mapping ok |
enzymatic footprinting | MI:0605 | enzymatic footprinting | no cv term id given - auto-mapping ok |
lambda repressor two hybrid | MI:0655 | lambda repressor two hybrid | no cv term id given - auto-mapping ok |
systematic evolution of ligands by exponential enrichment | MI:0657 | systematic evolution of ligands by exponential enrichment | no cv term id given - auto-mapping ok |
tandem affinity purification | MI:0676 | tandem affinity purification | no cv term id given - auto-mapping ok |
not-specified | MI:0686 | unspecified | no cv term id given - manual-mapping ok |
other | MI:0686 | unspecified | no cv term id given - manual-mapping ok |
sandwich immunoassay | MI:0695 | sandwich immunoassay | no cv term id given - auto-mapping ok |
dna directed dna polymerase assay | MI:0697 | dna directed dna polymerase assay | no cv term id given - auto-mapping ok |
rna directed rna polymerase assay | MI:0700 | rna directed rna polymerase assay | no cv term id given - auto-mapping ok |
gal4 vp16 complementation | MI:0728 | gal4 vp16 complementation | no cv term id given - auto-mapping ok |
comigration in gel electrophoresis | MI:0807 | comigration in gel electrophoresis | no cv term id given - auto-mapping ok |
comigration in sds page | MI:0808 | comigration in sds page | no cv term id given - auto-mapping ok |
bimolecular fluorescence complementation | MI:0809 | bimolecular fluorescence complementation | no cv term id given - auto-mapping ok |
protease accessibility laddering | MI:0814 | protease accessibility laddering | no cv term id given - auto-mapping ok |
x-ray fiber diffraction | MI:0825 | x-ray fiber diffraction | no cv term id given - auto-mapping ok |
x ray scattering | MI:0826 | x ray scattering | no cv term id given - auto-mapping ok |
phosphotransfer assay | MI:0841 | phosphotransfer assay | no cv term id given - auto-mapping ok |
immunodepleted coimmunoprecipitation | MI:0858 | immunodepleted coimmunoprecipitation | no cv term id given - auto-mapping ok |
immunodepleted coip | MI:0858 | immunodepleted coimmunoprecipitation | no cv term id given - auto-mapping ok |
intermolecular force | MI:0859 | intermolecular force | no cv term id given - auto-mapping ok |
atomic force microscopy | MI:0872 | atomic force microscopy | no cv term id given - auto-mapping ok |
atomic-force-microscopy | MI:0872 | AFM | no cv term id given - manual-mapping ok |
neutron diffraction | MI:0893 | neutron diffraction | no cv term id given - auto-mapping ok |
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