|
|
| Line 1: |
Line 1: |
| − | == Data source information ==
| |
| − |
| |
| − | {| cellspacing="0" cellpadding="5"
| |
| − | | align="center" style="background:#f0f0f0;"|'''Source''' ||align="center" style="background:#f0f0f0;"|'''Release date''' ||align="center" style="background:#f0f0f0;"|'''Release URL''' ||align="center" style="background:#f0f0f0;"|'''Download files''' ||align="center" style="background:#f0f0f0;"|'''Version'''
| |
| − | |-
| |
| − | | BHF_UCL ||2017-10-25 ||http://www.ebi.ac.uk/Tools/webservices/psicquic/bhf-ucl/webservices/current/search/query/*?format=tab27 ||bhfucl_psicquic.txt ||
| |
| − | |-
| |
| − | | BIND ||2017-10-25 || ||20060525*.txt ||
| |
| − | |-
| |
| − | | BIND_TRANSLATION ||2014-05-20 ||http://download.baderlab.org/BINDTranslation/release1_0/ ||BINDTranslation_v1_xml_AllSpecies.tar.gz ||
| |
| − | |-
| |
| − | | BIOGRID ||2017-09-30 ||https://thebiogrid.org/downloads/archives/Release%20Archive/BIOGRID-3.4.153/ ||BIOGRID-ALL-3.4.153.psi25.zip ||
| |
| − | |-
| |
| − | | CORUM ||2017-07-13 ||http://mips.helmholtz-muenchen.de/corum/download/ ||allComplexes.xml.zip ||
| |
| − | |-
| |
| − | | DIG ||2017-10-25 || ||morbidmap14062010.txt ||
| |
| − | |-
| |
| − | | DIP ||2017-02-05 ||http://dip.doe-mbi.ucla.edu/dip/Download.cgi?SM=3 || ||
| |
| − | |-
| |
| − | | FLY ||2017-10-25 ||http://www.uniprot.org/docs/ ||fly.txt ||2017_10
| |
| − | |-
| |
| − | | GENE ||2017-10-25 ||ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ ||gene2refseq.gz gene_info.gz gene2go.gz gene_history.gz ||
| |
| − | |-
| |
| − | | GENPEPT ||2017-10-17 ||ftp://ftp.ncbi.nih.gov/ncbi-asn1/protein_fasta/ ||gb*.fsa_aa.gz ||
| |
| − | |-
| |
| − | | HPIDB ||2017-10-25 ||http://www.ebi.ac.uk/Tools/webservices/psicquic/hpidb/webservices/current/search/query/*?format=tab27 ||hpidb_psicquic.txt ||
| |
| − | |-
| |
| − | | HPRD ||2193-12-05 || ||HPRD_PSIMI_041310.tar.gz ||
| |
| − | |-
| |
| − | | I2D_IMEX ||2017-10-25 ||http://www.ebi.ac.uk/Tools/webservices/psicquic/i2d/webservices/current/search/query/*?format=tab27 ||i2dimex_psicquic.txt ||
| |
| − | |-
| |
| − | | INNATEDB ||2017-10-22 ||http://www.innatedb.com/download/interactions/ ||innatedb_all.mitab.gz ||
| |
| − | |-
| |
| − | | INTACT ||2017-09-03 ||ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psi25/ ||pmidMIF25.zip ||
| |
| − | |-
| |
| − | | INTCOMPLEX ||2017-09-03 ||ftp://ftp.ebi.ac.uk/pub/databases/intact/complex/current/psi25/ ||complexesMIF25.zip ||
| |
| − | |-
| |
| − | | IPI ||2012-07-19 ||ftp://ftp.ebi.ac.uk/pub/databases/IPI/last_release/current/ ||*.fasta.gz ||
| |
| − | |-
| |
| − | | MATRIXDB ||2016-06-17 ||http://matrixdb.univ-lyon1.fr/download/ ||matrixdb_FULL.tab.gz ||
| |
| − | |-
| |
| − | | MBINFO ||2017-10-25 ||http://www.ebi.ac.uk/Tools/webservices/psicquic/mbinfo/webservices/current/search/query/*?format=tab27 ||mbinfo_psicquic.txt ||
| |
| − | |-
| |
| − | | MMDB ||2014-05-28 ||ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ ||table ||
| |
| − | |-
| |
| − | | MOLCON ||2017-10-25 ||http://www.ebi.ac.uk/Tools/webservices/psicquic/molcon/webservices/current/search/query/*?format=tab27 ||molcon_psicquic.txt ||
| |
| − | |-
| |
| − | | MPACT ||2017-10-25 || ||mpact-complete.psi25.xml.gz ||
| |
| − | |-
| |
| − | | MPPI ||2017-10-25 || ||mppi.gz ||
| |
| − | |-
| |
| − | | PDB ||2017-10-25 ||ftp://ftp.ncbi.nih.gov/blast/db/FASTA/ ||pdbaa.gz ||
| |
| − | |-
| |
| − | | PSI_MI ||2017-10-25 ||http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/mi/rel25/data/ ||psi-mi25.obo ||
| |
| − | |-
| |
| − | | QUICKGO ||2017-11-24 ||http://www.ebi.ac.uk/QuickGO/psicquic/webservices/current/search/query/* ||quickgo_psicquic.txt ||
| |
| − | |-
| |
| − | | REACTOME ||2017-10-25 ||http://www.ebi.ac.uk/Tools/webservices/psicquic/reactome/webservices/current/search/query/* ||reactome_psicquic.txt ||
| |
| − | |-
| |
| − | | REFSEQ ||2017-09-15 ||ftp://ftp.ncbi.nih.gov/refseq/release//complete/ ||complete*.protein.gpff.gz ||
| |
| − | |-
| |
| − | | TAXONOMY ||2017-10-25 ||ftp://ftp.ncbi.nih.gov/pub/taxonomy/ ||taxdump.tar.gz ||
| |
| − | |-
| |
| − | | UNIPROT ||2017-10-25 ||ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/ ||uniprot_sprot.dat.gz uniprot_trembl.dat.gz uniprot_sprot_varsplic.fasta.gz reldate.txt ||2017_10
| |
| − | |-
| |
| − | | UNIPROTPP ||2017-10-25 ||http://www.ebi.ac.uk/Tools/webservices/psicquic/uniprot/webservices/current/search/query/*?format=tab27 ||uniprotpp_psicquic.txt ||
| |
| − | |-
| |
| − | | VIRUSHOST ||2017-10-25 ||http://virhostnet.prabi.fr:9090/psicquic/webservices/current/search/query/* ||virushost_psicquic.txt ||
| |
| − | |-
| |
| − | | YEAST ||2017-10-25 ||http://www.uniprot.org/docs/ ||yeast.txt ||2017_10
| |
| − | |}
| |
| | | | |
| | == Interactions available from major taxonomies == | | == Interactions available from major taxonomies == |
