Difference between revisions of "Sources iRefIndex 18.0"

From irefindex
 
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Applies to iRefIndex release: 18.0
 
Applies to iRefIndex release: 18.0
  
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Release date: -06-2021
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Release date: 11-06-2021
  
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Authors: Joris Dekimpe
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Authors: Tom Nissens
  
 
Database: iRefIndex (http://irefindex.org)
 
Database: iRefIndex (http://irefindex.org)
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Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.
 
Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.
 
Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.
 
Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.
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*For statistics on the full dataset please refer to: https://irefindex.vib.be/wiki/index.php?title=Statistics_iRefIndex_16.0
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*For statistics on the full dataset please refer to: https://irefindex.vib.be/wiki/index.php?title=Statistics_iRefIndex_18.0
  
  

Latest revision as of 10:19, 20 August 2021

Last edited: 2021-08-20

Applies to iRefIndex release: 18.0

Release date: 11-06-2021

Authors: Tom Nissens

Database: iRefIndex (http://irefindex.org)


Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex. Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.


Data source information

Source Release date Release URL Download files Version
ATHALIANA 2019-11-20 ftp://ftp.ensemblgenomes.org/pub/plants/release-46/tsv/arabidopsis_thaliana/ Arabidopsis_thaliana.TAIR*.uniprot.tsv.gz
BAR 2021-04-27 http://bar.utoronto.ca:9090/psicquic/webservices/current/search/query/* bar_psicquic.txt
BHF_UCL 2021-04-22 http://www.ebi.ac.uk/Tools/webservices/psicquic/bhf-ucl/webservices/current/search/query/*?format=tab27 bhfucl_psicquic.txt
BIND 2021-04-19 20060525*.txt
BIND_TRANSLATION 2014-05-20 http://download.baderlab.org/BINDTranslation/release1_0/ BINDTranslation_v1_xml_AllSpecies.tar.gz
BIOGRID 2021-04-19 https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.187/ BIOGRID-ALL-3.5.187.psi25.zip
CORUM 2020-02-28 http://mips.helmholtz-muenchen.de/corum/download/ allComplexes.xml.zip
DIG 2021-04-19 morbidmap14062010.txt
DIP 2021-04-29 https://imex.mbi.ucla.edu/xpsq-dip-all/service/rest/current/search/query/*?maxResults=104,965 dip_psicquic.txt
FLY 2021-04-07 http://www.uniprot.org/docs/ fly.txt 2021_02
GENE 2021-04-19 ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ gene2refseq.gz gene_info.gz gene2go.gz gene_history.gz
GENPEPT 2021-02-17 ftp://ftp.ncbi.nih.gov/ncbi-asn1/protein_fasta/ gb*.fsa_aa.gz
HPIDB 2021-04-22 http://www.ebi.ac.uk/Tools/webservices/psicquic/hpidb/webservices/current/search/query/*?format=tab27 hpidb_psicquic.txt
HPRD 2021-04-20 HPRD_PSIMI_041310.tar.gz
HURI 2021-04-27 http://interactome-atlas.org/data/ HuRI.psi
IMEX 2021-04-22 http://www.ebi.ac.uk/Tools/webservices/psicquic/imex/webservices/current/search/query/*?format=tab27 imex_psicquic.txt
INNATEDB 2021-04-23 http://www.innatedb.com/download/interactions/ innatedb_psicquic.txt
INTACT 2021-03-12 ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psi25/ pmidMIF25.zip
INTCOMPLEX 2021-03-12 ftp://ftp.ebi.ac.uk/pub/databases/intact/complex/current/psi25/ complexesMIF25.zip
MATRIXDB 2021-04-26 http://matrixdb.univ-lyon1.fr:8080/psicquic/webservices/current/search/query/*?format=tab27 matrixdb_psicquic.txt
MBINFO 2021-04-23 http://www.ebi.ac.uk/Tools/webservices/psicquic/mbinfo/webservices/current/search/query/* mbinfo_psicquic.txt
MINT 2021-04-20 http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/query/*?format=tab27 mint_psicquic.txt
MMDB 2014-05-29 ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ table
MPACT 2021-04-21 mpact-complete.psi25.xml.gz
MPIDB 2021-04-23 http://www.ebi.ac.uk/Tools/webservices/psicquic/mpidb/webservices/current/search/query/*?format=tab27 mpidb_psicquic.txt
MPPI 2021-04-19 mppi.gz
PDB 2021-04-10 ftp://ftp.ncbi.nih.gov/blast/db/FASTA/ pdbaa.gz
PSI_MI 2021-04-19 https://raw.githubusercontent.com//HUPO-PSI/psi-mi-CV/master/ psi-mi.obo
QUICKGO 2021-04-23 http://www.ebi.ac.uk/QuickGO/psicquic/webservices/current/search/query/*?format=tab27 quickgo_psicquic.txt
REACTOME 2021-04-19 http://www.ebi.ac.uk/Tools/webservices/psicquic/reactome/webservices/current/search/query/*?format=tab27 reactome_psicquic.txt
SPIKE 2021-04-19 http://spike.cs.tau.ac.il/psicquic-ws/webservices/current/search/query/* spike_psicquic.txt
TAXONOMY 2021-04-19 ftp://ftp.ncbi.nih.gov/pub/taxonomy/ taxdump.tar.gz
UNIPROT 2021-04-07 ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/ uniprot_sprot.dat.gz uniprot_trembl.dat.gz uniprot_sprot_varsplic.fasta.gz reldate.txt 2021_02
UNIPROTPP 2021-04-23 http://www.ebi.ac.uk/Tools/webservices/psicquic/uniprot/webservices/current/search/query/*?format=tab27 uniprotpp_psicquic.txt
VIRUSHOST 2021-04-21 http://virhostnet.prabi.fr:9090/psicquic/webservices/current/search/query/* virushost_psicquic.txt
YEAST 2021-04-07 http://www.uniprot.org/docs/ yeast.txt 2021_02

All iRefIndex Pages

Follow this link for a listing of all iRefIndex related pages (archived and current).

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