Difference between revisions of "SEGUID library"
From irefindex
| (7 intermediate revisions by the same user not shown) | |||
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import java.util.Arrays; | import java.util.Arrays; | ||
import sha.etc.no.uio.biotek.SHA_Main; | import sha.etc.no.uio.biotek.SHA_Main; | ||
| − | public class Main { | + | |
| + | public class Main{ | ||
| + | |||
public static void main(String[] args) { | public static void main(String[] args) { | ||
| − | + | SHA_Main main = new SHA_Main(); | |
String primary_amino_acid_sequence = "mdnmsitntp tsndaclsiv hslmchrqgg esetfakrai"; | String primary_amino_acid_sequence = "mdnmsitntp tsndaclsiv hslmchrqgg esetfakrai"; | ||
int taxid =9606; | int taxid =9606; | ||
| Line 15: | Line 17: | ||
System.out.println("ROGID = "+seguid+taxid); | System.out.println("ROGID = "+seguid+taxid); | ||
} | } | ||
| + | |||
} | } | ||
| − | |||
| − | |||
| − | |||
== Creating RIGID == | == Creating RIGID == | ||
| Line 24: | Line 24: | ||
import java.util.Arrays; | import java.util.Arrays; | ||
import sha.etc.no.uio.biotek.SHA_Main; | import sha.etc.no.uio.biotek.SHA_Main; | ||
| + | |||
public class Main { | public class Main { | ||
public static void main(String[] args) { | public static void main(String[] args) { | ||
Latest revision as of 15:15, 4 February 2009
Help file for iRefIndex SEGUID library
Creating SEGUID and ROGID
import java.util.Arrays; import sha.etc.no.uio.biotek.SHA_Main;
public class Main{
public static void main(String[] args) {
SHA_Main main = new SHA_Main();
String primary_amino_acid_sequence = "mdnmsitntp tsndaclsiv hslmchrqgg esetfakrai";
int taxid =9606;
String seguid = main.getSegu(primary_amino_acid_sequence);
System.out.println("SEGUID = "+seguid);
System.out.println("ROGID = "+seguid+taxid);
}
}
Creating RIGID
import java.util.Arrays; import sha.etc.no.uio.biotek.SHA_Main;
public class Main {
public static void main(String[] args) {
SHA_Main main = new SHA_Main();
String[] segulist_2 = {"waTMnn0uXSbf7bracJUScX9ckEc9606", "A9Ga60ipENjSsgt59TfNchYqXtw9606"};
Arrays.sort(segulist_2);
String concat = segulist_2[0] + segulist_2[1];
System.out.println("RIGID= " + main.getSeguForWithNum(concat));
}
}
