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| | <pre> | | <pre> |
| − | This page is under construction. | + | This domain is reserved for CLSI |
| − | It is intended to collect listings and links to bioinformatics services, training and courses, email groups and research groups at the University of Oslo and other institutions in the Oslo region.
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| − | Suggested changes or additions can be sent to ian.donaldson@biotek.uio.no.
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| − | </pre>
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| | | | |
| | + | http://www.mn.uio.no/ifi/english/research/networks/clsi/ |
| | | | |
| | + | Contact |
| | + | ragni.indahl@biotek.uio.no |
| | + | or |
| | + | george.magklaras@biotek.uio.no |
| | + | </pre> |
| | | | |
| | | | |
| | + | CLSI (Computational Life Sciences Initiative): |
| | | | |
| − | | + | http://www.mn.uio.no/ifi/english/research/networks/clsi/ |
| − | ==Bioinformatics Services==
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| − | | |
| − | {|class="wikitable" style="text-align:left" border="1" cellpadding="5"
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| − | |+ '''Bioinformatics Services'''
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| − | !width="150"|Service
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| − | !width="150"|Contact
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| − | !width="250"|Link
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| − | !width="350"|Description
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| − | |-
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| − | |style="background:SteelBlue; color:white" colspan="5" align="center"| -
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| − | |-
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| − | |Bioinformatics core facility
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| − | ||ehovig at ifi.uio.no
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| − | +47 22935416
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| − | ||http://core.rr-research.no/index.php?section=3
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| − | ||The Bioinformatics Core Facility established at Rikshospitalet-Radiumhospitalet (RR) will provide its users at RR and the University of Oslo with a range of services within bioinformatics, including analysis of DNA and protein sequences, analysis of microarray data, protein structure analysis and access to useful databases and web services
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| − | |-
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| − | |FUGE Bioinformatics Help Desk
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| − | ||contact@bioinfo.no
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| − | | |
| − | Ståle Nygård +47 951 29 127
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| − | ||http://www.bioinfo.no/help-desk
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| − | ||The platform can assist researchers with bioinformatics analyses and programming tasks. See the web-site for more details.
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| − | |-
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| − | |Bioportal
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| − | ||Kamran Shalchian-Tabrizi
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| − | | |
| − | kamran.shalchian-tabrizi@bio.uio.no
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| − | ||http://www.bioportal.uio.no/about.php
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| − | ||The Bioportal at University of Oslo is a web-based service platform that provides access to applications and the high-performance computing resources required to run them. Applications include those for phylogenomic analysis, population genetics and high-throughput sequence analysis. See the web-site for more details.
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| − | |-
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| − | |EMBNet Norway
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| − | ||George Magklaras
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| − | | |
| − | admin@embnet.uio.no
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| − | ||http://www.no.embnet.org/
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| − | ||The Norwegian EMBnet node offers a variety of services to the Bioinformatics community including access to updated biological sequence databases, bioinformatics sequence analysis tools and sata storage capabilities. See the web-site for more details.
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| − | |-
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| − | |Research Computing Services group
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| − | ||Hans Eide
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| − | ||http://www2.usit.uio.no/suf/vd/
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| − | ||The VD-group (Scientific Computing Group) within the Center for Information Technology Services (USIT) at the University of Oslo is responsible for user support for the HPC resources at the university and nationwide. Questions regarding the VD-group and its services can be directed to the mailinglist hpc@usit.uio.no.
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| − | |-
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| − | |}
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| − | | |
| − | | |
| − | ==Bioinformatics Training and Courses==
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| − | | |
| − | {|class="wikitable" style="text-align:left" border="1" cellpadding="5"
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| − | |+ '''Bioinformatics Courses and Programmes'''
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| − | !width="150"|Course Name and Code
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| − | !width="150"|Contact
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| − | !width="250"|Link
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| − | !width="350"|Description
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| − | |-
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| − | |style="background:SteelBlue; color:white" colspan="5" align="center"| -
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| − | |-
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| − | |Bioinformatics for Molecular Biology
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| − | | |
| − | MBV-INF4410
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| − | | |
| − | MBV-INF9410
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| − | ||ian.donaldson@biotek.uio.no
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| − | ||http://bioinformatics.uio.no/wiki/Bioinformatics_course
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| − | | |
| − | http://www.uio.no/studier/emner/matnat/molbio/MBV-INF4410/
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| − | | |
| − | http://www.uio.no/studier/emner/matnat/molbio/MBV-INF9410/
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| − | ||
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| − | This two week, intensive course will introduce students to bioinformatics resources and tools for molecular biology research. Some of the best researchers in Norway will talk about their fields in general as well as their own work. Students are encouraged to bring a lap-top for in-course demonstrations as well as practical lab exercises. The course is intended for biology students as well as computer science students wishing to extend their knowledge of informatics problems in the biological domain. No prior background in bioinformatics or computer science is required.
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| − | |}
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| | ||Norwegian-wide bioinformatics email list. | | ||Norwegian-wide bioinformatics email list. |
| | |- | | |- |
| − | | | + | |socbin |
| − | || | + | ||socbin@sbc.su.se |
| − | ||
| + | ||https://mail.sbc.su.se/mailman/listinfo/socbin/ |
| − | ||
| + | ||Society for Bioinformatics in the Nordic Countries |
| − | ||
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| − | |-
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| − | |}
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| − | | |
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| − | | |
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| − | ==Bioinformatics Research Groups==
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| − | | |
| − | | |
| − | {|class="wikitable" style="text-align:left" border="1" cellpadding="5"
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| − | |+ '''Bioinformatics Research Groups'''
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| − | !width="150"|Group Leader
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| − | !width="150"|Contact
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| − | !width="250"|Link
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| − | !width="350"|Specialization
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| − | !width="50"|D/U
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| − | |-
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| − | |style="background:SteelBlue; color:white" colspan="4" align="center"| -
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| − | |-
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| − | |O. Andreassen
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| − | ||o.a.andreassen@medisin.uio.no
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| − | ||http://pgc.unc.edu
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| − | | |
| − | http://www.uio.no/sok?la=en&person=olean
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| − | ||Genetics of mental disorders – CNVs and GWAS.
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| − | ||U
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| − | |-
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| − | |Jan G. Bjaalie
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| − | ||j.g.bjaalie@medisin.uio.no
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| − | ||http://www.cmbn.no/group-bjaalie.html
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| − | | |
| − | http://www.rbwb.org/
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| − | ||Brain imaging, databases
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| − | ||DU
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| − | |-
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| − | |A.L. Børresen-Dale
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| − | ||alb@radium.uio.no
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| − | ||http://www.rr-research.no/borresen/ | |
| − | ||Breast cancer integrative genomics, array bioinformatics.
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| − | ||U
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| − | |-
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| − | |Håvard Danielsen
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| − | ||hdaniels(at)labmed.uio.no
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| − | ||http://www.cancerbiomed.net/groups/hd/
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| − | | |
| − | http://www.rr-research.no/medicalinformatics/
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| − | ||Imaging | |
| − | ||DU
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| | |- | | |- |
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| − | Geir Arve Christensen
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| − | ||geir.christensen@medisin.uio.no
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| − | ||http://www.uio.no/sok?la=en&person=geirc
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| − |
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| − |
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| − | ||Bayesian networks
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| − | ||
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| − | |-
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| − | |Ian Donaldson
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| − | ||ian.donaldson@biotek.uio.no
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| − | ||http://donaldson.uio.no
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| − | ||Protein-protein interaction databases,
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| − | biomedical text mining and animation of cellular pathways.
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| − | ||
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| − | |-
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| − | |E. Hovig
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| − | ||ehovig@radium.uio.no
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| − | ||http://www.rr-research.no/hovig/
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| − | ||Integrative and inferential genomics. DNA variation. DNA melting. Complex trait networks. Text mining. Chromatin genomics.
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| − | ||DU
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| − | |-
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| − | |K.S. Jakobsen
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| − | ||k.s.jakobsen@bio.uio.no
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| − | ||http://www.cees.uio.no/
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| − |
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| − | http://www.cees.uio.no/about/staff/frida/687.xml
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| − | ||Metagenomics. Genome analysis. High-throughput sequence assembly, annotation and SNP analysis. Comparative genomics.
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| − | ||
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| − | |-
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| − | |V. Kristensen
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| − | ||
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| − | ||
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| − | ||Breast cancer integrative genomics, array bioinformatics.
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| − | ||
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| − | |-
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| − | |A.B. Kolstø
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| − | ||
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| − | ||
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| − | ||
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| − | ||
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| − | |-
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| − | |Ole-Christian Lingjærde
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| − | ||http://folk.uio.no/ole/
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| − |
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| − | http://www.ifi.uio.no/forskning/grupper/bioinf/
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| − | ||
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| − | |-
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| − | |H. Osmundsen
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| − | ||
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| − | ||
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| − | ||
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| − | ||
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| − | |-
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| − | |T. Rognes
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| − | ||
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| − | ||
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| − | ||Computational analysis of genome sequences, DNA repair mechanisms, homology search tools, structural bioinformatics, modelling the structure of proteins, predicting the effect of mutations.
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| − | ||
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| − | |-
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| − | |R. Skotheim/R. Lothe
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| − | ||
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| − | ||
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| − | ||Integrative cancer genomics, array bioinformatics and high-throughput sequencing.
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| − | ||
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| − | |-
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| − | |K. Shalchian-Tabrizi
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| − | ||
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| − | ||
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| − | ||
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| − | |-
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| − | |D. Undlien
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| − | ||
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| − | ||
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| − | ||Genetics, deep sequencing
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| | |- | | |- |
| | |} | | |} |
| − |
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| − | ==Bioinformatics MetaDataBases==
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| − |
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| − | http://sites.univ-provence.fr/~wabim/english/logligne.html
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| − |
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| − | http://bioinformatics.ca/links_directory/index.php
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| − |
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| − | http://www3.oup.co.uk/nar/database/c/
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| − | http://databases.biomedcentral.com/
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| − | ==Bioinfomratics Web Services Registry==
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| − |
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| − | http://www.biocatalogue.org/
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| − |
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| − | ==Bioinformaatics Organizations==
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| − |
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| − | http://www.bioinformatics.org/
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| − |
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| − | http://www.biomedexperts.com
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