Difference between revisions of "iRefR"
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| − | iRefR | + | iRefR is an R package that provides access to [[iRefIndex]]. It allows the user to load any version of the consolidated protein interaction database "iRefIndex" and perform tasks such as: selecting databases, pmids, experimental methods, searching for specific proteins, separate binary interactions from complexes and polymers, generate complexes according to an algorithm that looks after possible binary-represented complexes, make general database statistics and create network graphs, among others. |
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| + | {|class="wikitable" style="text-align:left; clear: left" border="0" cellpadding="10" | ||
| + | | style="vertical-align: top" | | ||
| + | == Installation == | ||
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| + | iRefR is available from CRAN as the [http://cran.r-project.org/web/packages/iRefR/index.html iRefR package] and can also be downloaded from... | ||
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| + | ftp://ftp.no.embnet.org/irefindex/iRefR/current/ | ||
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| + | Documentation and tutorial material is included. First time users should refer to <tt>iRefR_tutorial.pdf</tt> in the <tt>doc</tt> directory of the source distribution. | ||
| + | |<imagemap> | ||
| + | Image:Applications-system-80x80.png | ||
| + | default [ftp://ftp.no.embnet.org/irefindex/iRefR/current/] | ||
| + | </imagemap> | ||
| + | |- | ||
| + | | style="vertical-align: top" | | ||
| + | == Publication == | ||
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| + | [http://www.biomedcentral.com/1471-2105/12/455 iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.] | ||
| + | |<imagemap> | ||
| + | Image:pubmed-logo.png|80x80px|left | ||
| + | default [http://www.biomedcentral.com/1471-2105/12/455] | ||
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| + | |} | ||
Latest revision as of 16:08, 2 December 2011
iRefR is an R package that provides access to iRefIndex. It allows the user to load any version of the consolidated protein interaction database "iRefIndex" and perform tasks such as: selecting databases, pmids, experimental methods, searching for specific proteins, separate binary interactions from complexes and polymers, generate complexes according to an algorithm that looks after possible binary-represented complexes, make general database statistics and create network graphs, among others.
InstallationiRefR is available from CRAN as the iRefR package and can also be downloaded from... ftp://ftp.no.embnet.org/irefindex/iRefR/current/ Documentation and tutorial material is included. First time users should refer to iRefR_tutorial.pdf in the doc directory of the source distribution. |
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PublicationiRefR: an R package to manipulate the iRefIndex consolidated protein interaction database. |
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