Difference between revisions of "Donaldson Research"

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= Donaldson Research =
 
  
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This site is for the ongoing support of iRefIndex.
  
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<facebook-like />
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If you have questions related to its contents or use, please contact me at the address below.
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</div>
 
  
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== Research Interests ==
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I am currently based in the Oxford, UK area.
  
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Our primary interests include protein interaction data consolidation, text mining and data mining especially with respect to diseases.
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Best regards,
  
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Our recent work on a consolidated protein interaction database can be found at http://irefindex.org/.
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Ian Donaldson<br>
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ian@donaldsonresearch.com<br>
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[mailto:ian@donaldsonresearch.com email me]<br>
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[http://donaldsonresearch.com/ Donaldson Research]
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...
  
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Email: ian.oslo@gmail.com
 
  
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== Projects ==
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[http://donaldsonresearch.com Visit the Donaldson Research Site]
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== Projects being maintained by Donaldson Research ==
  
 
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iRefIndex is available via a number of interfaces: in MITAB tab-delimited text (iRefIndex), web-site (iRefWeb), Cytoscape plugin (iRefScape) and an R package (iRefR).  
 
iRefIndex is available via a number of interfaces: in MITAB tab-delimited text (iRefIndex), web-site (iRefWeb), Cytoscape plugin (iRefScape) and an R package (iRefR).  
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=== [[Magrathea]] ===
 
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[[Magrathea]]<br/> Magrathea is prototype software demonstrating how animations of molecular pathways can be driven automatically using local context of the participant molecules.
 
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=== [[The Biolibrarian Proposal]] ===
 
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The Biolibrarian proposal proposes the creation of new positions at university libraries around the world.
 
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These people would act as local biocurators that help local university researchers submit data to relevant biological databases.
 
  
 
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=== [[Bioscape]] ===
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<br/> Bioscape is our in-house text-mining system used to locate gene and protein mentions in PubMed abstracts.
 
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== Group Members ==
 
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* [Ian Donaldson]
 
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* [Paul Boddie]
 
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== Past Group Members ==
 
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* Katerina Michalickova
 
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* Hanna Nemchenko
 
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* Sabry Razick: Now in Trondheim at [http://www.ntnu.edu/employees/sabry.razick NTNU].
 
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* [[Antonio Mora]]
 
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==Local Seminar Series==
 
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The [http://www.mn.uio.no/ifi/english/research/networks/clsi/seminars/ Computational Life Science seminars]
 
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==Links to Past Courses==
 
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=== [[Bioinformatics_course|Bioinformatics for molecular biology]] ===
 
  
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A new, two-week, intensive bioinformatics course that covers various aspects of bioinformatics analyses for molecular biology. Statistics, multiple hypothesis testing, microarray analysis, sequence alignments, working with protein structures, protein interaction networks and more.  See the [[Bioinformatics course|course page]] for schedule information along with all material used in the course.  The course is composed of lectures and practical tutorials.  
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=== [[Donaldson Group | Past Projects]] ===
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Access to past projects including Magrathea, BioScape and past courses in Bioinformatics can be found on the old [[Donaldson Group]] page.
 
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Introductory Perl is taught by Antonio Mora and Ian Donaldson as part of the [http://www.uio.no/studier/emner/matnat/molbio/MBV3070/ MBV3070] course.  The slides for these lectures are available here at [[MBV3070|Perl lectures for MBV3070]].
 
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<!--Antonio Mora and Ian Donaldson also hold the "Applied readings in mathematics, computer science and biology" course every second Autumn term.  See [http://www.uio.no/studier/emner/matnat/molbio/MBV-INF4410/ MBV-INF4410].
 
 
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==Contact==
 
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ian.oslo at gmail.com
 

Latest revision as of 11:32, 28 December 2019


This site is for the ongoing support of iRefIndex.

If you have questions related to its contents or use, please contact me at the address below.

I am currently based in the Oxford, UK area.

Best regards,

Ian Donaldson
ian@donaldsonresearch.com
email me
Donaldson Research

...




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