Difference between revisions of "Sources iRefIndex 16.0"
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Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex. | Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex. | ||
Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source. | Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source. | ||
| − | *For statistics on the full dataset please refer to: | + | *For statistics on the full dataset please refer to: https://irefindex.vib.be/wiki/index.php?title=Statistics_iRefIndex_16.0 |
Latest revision as of 18:34, 4 October 2019
Last edited: 2019-10-04
Applies to iRefIndex release: 16.0
Release date: 29-05-2019
Authors: Sam Dupont
Database: iRefIndex (http://irefindex.org)
Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.
Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.
- For statistics on the full dataset please refer to: https://irefindex.vib.be/wiki/index.php?title=Statistics_iRefIndex_16.0
Interaction data sets BIND_TRANSLATION DATE 2014-05-20 20:32:00 BIND_TRANSLATION RELEASE_URL http://download.baderlab.org/BINDTranslation/release1_0/ BIND_TRANSLATION DOWNLOAD_FILES BINDTranslation_v1_xml_AllSpecies.tar.gz BIOGRID DATE 2019-04-26 07:30:52 BIOGRID RELEASE_URL https://thebiogrid.org/downloads/archives/Release%20Archive/BIOGRID-3.5.171/ BIOGRID DOWNLOAD_FILES BIOGRID-ALL-3.5.171.psi25.zip CORUM DATE 2019-03-27 18:59:49 CORUM RELEASE_URL http://mips.helmholtz-muenchen.de/corum/download/ CORUM DOWNLOAD_FILES allComplexes.xml.zip DIP RELEASE_URL http://dip.doe-mbi.ucla.edu/dip/Download.cgi?SM=3 HPRD DATE 2019-04-24 08:31:39 HPRD RELEASE_URL file:///data/alex/ HPRD DOWNLOAD_FILES HPRD_PSIMI_041310.tar.gz INTACT DATE 2019-03-23 09:58:00 INTACT RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psi25/ INTACT DOWNLOAD_FILES pmidMIF25.zip INTCOMPLEX DATE 2019-03-23 09:58:00 INTCOMPLEX RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/intact/complex/current/psi25/ INTCOMPLEX DOWNLOAD_FILES complexesMIF25.zip MPACT DATE 2019-04-24 08:32:42 MPACT RELEASE_URL file:///data/ian/mpact/ MPACT DOWNLOAD_FILES mpact-complete.psi25.xml.gz MPPI DATE 2019-04-24 08:33:00 MPPI RELEASE_URL file:///data/ian/mppi/ MPPI DOWNLOAD_FILES mppi.gz SPIKE DATE 2012-01-25 14:49:34 SPIKE RELEASE_URL http://www.cs.tau.ac.il//~spike/download/ SPIKE DOWNLOAD_FILES LatestSpikeDB.xml.zip MINT DATE 2019-04-25 08:18:34 MINT RELEASE_URL http://mint.bio.uniroma2.it/mitab/ MINT DOWNLOAD_FILES MINT_MiTab.txt MPIDB DATE 2019-04-23 13:38:35 MPIDB RELEASE_URL file:///data/irdata15A/MPIDB/ MPIDB DOWNLOAD_FILES mpidb_psicquic.txt I2D_IMEX DATE 2019-04-23 13:38:35 I2D_IMEX RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/i2d/webservices/current/search/query/*?format=tab27 I2D_IMEX DOWNLOAD_FILES i2dimex_psicquic.txt INNATEDB DATE 2018-07-05 12:06:54 INNATEDB RELEASE_URL http://www.innatedb.com/download/interactions/ INNATEDB DOWNLOAD_FILES innatedb_all.mitab.gz MATRIXDB DATE 2019-01-14 10:22:50 MATRIXDB RELEASE_URL http://matrixdb.univ-lyon1.fr/download/ MATRIXDB DOWNLOAD_FILES matrixdb_FULL.tab.gz REACTOME DATE 2019-04-23 13:39:14 REACTOME RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/reactome/webservices/current/search/query/* REACTOME DOWNLOAD_FILES reactome_psicquic.txt VIRUSHOST DATE 2019-04-23 13:39:16 VIRUSHOST RELEASE_URL http://virhostnet.prabi.fr:9090/psicquic/webservices/current/search/query/* VIRUSHOST DOWNLOAD_FILES virushost_psicquic.txt UNIPROTPP DATE 2019-04-23 13:39:27 UNIPROTPP RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/uniprot/webservices/current/search/query/*?format=tab27 UNIPROTPP DOWNLOAD_FILES uniprotpp_psicquic.txt HPIDB DATE 2019-04-23 13:39:30 HPIDB RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/hpidb/webservices/current/search/query/*?format=tab27 HPIDB DOWNLOAD_FILES hpidb_psicquic.txt BHF_UCL DATE 2019-04-23 13:39:33 BHF_UCL RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/bhf-ucl/webservices/current/search/query/*?format=tab27 BHF_UCL DOWNLOAD_FILES bhfucl_psicquic.txt MBINFO DATE 2019-04-23 13:39:36 MBINFO RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/mbinfo/webservices/current/search/query/*?format=tab27 MBINFO DOWNLOAD_FILES mbinfo_psicquic.txt MOLCON DATE 2019-04-23 13:39:36 MOLCON RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/molcon/webservices/current/search/query/*?format=tab27 MOLCON DOWNLOAD_FILES molcon_psicquic.txt QUICKGO DATE 2019-04-26 08:19:35 QUICKGO RELEASE_URL http://www.ebi.ac.uk/QuickGO/psicquic/webservices/current/search/query/* QUICKGO DOWNLOAD_FILES quickgo_psicquic.txt PSI_MI DATE 2019-04-23 13:39:36 PSI_MI RELEASE_URL http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/mi/rel25/data/ PSI_MI DOWNLOAD_FILES psi-mi25.obo TAXONOMY DATE 2019-04-23 11:23:00 TAXONOMY RELEASE_URL ftp://ftp.ncbi.nih.gov/pub/taxonomy/ TAXONOMY DOWNLOAD_FILES taxdump.tar.gz BIND DATE 2017-10-25 19:45:46 BIND RELEASE_URL file:///data/ian/bond.unleashedinformatics.com/downloads/data/BIND/data/bindflatfiles/bindindex/ BIND DOWNLOAD_FILES 20060525*.txt DIG DATE 2019-04-24 08:29:11 DIG RELEASE_URL file:///data/ian/dig/ DIG DOWNLOAD_FILES morbidmap14062010.txt FLY VERSION 2019_03 FLY DATE 10-Apr-2019 FLY RELEASE_URL http://www.uniprot.org/docs/ FLY DOWNLOAD_FILES fly.txt GENE DATE 2019-04-22 23:43:00 GENE RELEASE_URL ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ GENE DOWNLOAD_FILES gene2refseq.gz gene_info.gz gene2go.gz gene_history.gz GENPEPT DATE 2019-04-22 17:03:00 GENPEPT RELEASE_URL ftp://ftp.ncbi.nih.gov/ncbi-asn1/protein_fasta/ GENPEPT DOWNLOAD_FILES gb*.fsa_aa.gz IPI DATE 2012-07-19 22:00:00 IPI RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/IPI/last_release/current/ IPI DOWNLOAD_FILES *.fasta.gz MMDB DATE 2014-05-28 22:00:00 MMDB RELEASE_URL ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ MMDB DOWNLOAD_FILES table PDB DATE 2019-04-09 02:00:00 PDB RELEASE_URL ftp://ftp.ncbi.nih.gov/blast/db/FASTA/ PDB DOWNLOAD_FILES pdbaa.gz REFSEQ DATE 2019-03-18 15:27:00 REFSEQ RELEASE_URL ftp://ftp.ncbi.nih.gov/refseq/release//complete/ REFSEQ DOWNLOAD_FILES complete*.protein.gpff.gz UNIPROT VERSION 2019_03 UNIPROT DATE 10-Apr-2019 UNIPROT RELEASE_URL ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/ UNIPROT DOWNLOAD_FILES uniprot_sprot.dat.gz uniprot_trembl.dat.gz uniprot_sprot_varsplic.fasta.gz reldate.txt YEAST VERSION 2019_03 YEAST DATE 10-Apr-2019 YEAST RELEASE_URL http://www.uniprot.org/docs/ YEAST DOWNLOAD_FILES yeast.txt
All iRefIndex Pages
Follow this link for a listing of all iRefIndex related pages (archived and current).
