Difference between revisions of "PSICQUIC Web Services for iRefIndex"
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http://biotin.uio.no:8080/psicquic-ws/webservices/ | http://biotin.uio.no:8080/psicquic-ws/webservices/ | ||
| − | + | All active services: | |
| − | http://www.ebi.ac.uk/ | + | http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS |
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The format and content of the interaction data returned by these services is described at | The format and content of the interaction data returned by these services is described at | ||
| − | http://irefindex.uio.no/wiki/ | + | http://irefindex.uio.no/wiki/README_MITAB2.6_for_iRefIndex_7.0 |
| + | |||
| + | ===Changes from last version=== | ||
| + | There are major changes from iRefindex psicquic service version 1.1.5 and version 1.1.6. In 1.1.5 the results returned were interaction centric (one line in results representing one binary interaction or a complex membership). From 1.1.6 onwards the results will be experimental centric (one line per evidence per source). The new extended PSI MI-TAB (version 2.6) is used in the implementation but, only the first 15 columns will be available at the moment in order to maintain cross compatibility. For further details on the returned results please refer the following WIKI page; | ||
| + | http://irefindex.uio.no/wiki/README_MITAB2.6_for_iRefIndex_7.0 | ||
| + | The second major change is the usage of UniProt and RefSeq identifiers as uidA and uidB when ever that is possible. | ||
Users are advised that there are differences between our implementation of these services and that of other databases. | Users are advised that there are differences between our implementation of these services and that of other databases. | ||
Most notably, | Most notably, | ||
| − | 1 | + | 1) interactions between 3 or more proteins (n-ary data) is represented in the PSI-MITAB files using a bi-partite model (one of the first two columns is used to represent the complex and the second column is used to represent a member of the complex). Other PSICQUIC services will likely use a spoke model representation. |
| − | |||
| − | |||
Please refer to our documentation above and documentation provided by other PSICQUIC providers if you plan to combine results from multiple services. | Please refer to our documentation above and documentation provided by other PSICQUIC providers if you plan to combine results from multiple services. | ||
Revision as of 15:29, 13 October 2010
These web services have not been officially released but are available for testing purposes. A publication is in preparation to describe these services (Aranda et al., in preparation). "PSICQUIC" is pronounced like the english word "psychic" as in the ability to perceive information hidden from the normal senses through extrasensory perception.
A number of use cases are envisioned for these services. For example, once implemented by multiple interaction databases, they would allow a user to make a query for information at one database web-site and then have that query replicated at all other interaction databases (that have implemented the service interface). The user could then receive a compiled list of results that match their query regardless of the database that contains the information.
WSDL location : http://biotin.uio.no:8080/psicquic-ws/webservices/psicquic?wsdl
Get version; http://biotin.uio.no:8080/psicquic-ws/webservices/psicquic/getVersion
Available services: http://biotin.uio.no:8080/psicquic-ws/webservices/
All active services: http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS
REST service samples:
- http://biotin.uio.no:8080/psicquic-ws/webservices/current/search/query/species:4932
- http://biotin.uio.no:8080/psicquic-ws/webservices/current/search/query/species:9606
http://code.google.com/p/psicquic/
The format and content of the interaction data returned by these services is described at
http://irefindex.uio.no/wiki/README_MITAB2.6_for_iRefIndex_7.0
Changes from last version
There are major changes from iRefindex psicquic service version 1.1.5 and version 1.1.6. In 1.1.5 the results returned were interaction centric (one line in results representing one binary interaction or a complex membership). From 1.1.6 onwards the results will be experimental centric (one line per evidence per source). The new extended PSI MI-TAB (version 2.6) is used in the implementation but, only the first 15 columns will be available at the moment in order to maintain cross compatibility. For further details on the returned results please refer the following WIKI page; http://irefindex.uio.no/wiki/README_MITAB2.6_for_iRefIndex_7.0 The second major change is the usage of UniProt and RefSeq identifiers as uidA and uidB when ever that is possible.
Users are advised that there are differences between our implementation of these services and that of other databases. Most notably,
1) interactions between 3 or more proteins (n-ary data) is represented in the PSI-MITAB files using a bi-partite model (one of the first two columns is used to represent the complex and the second column is used to represent a member of the complex). Other PSICQUIC services will likely use a spoke model representation.
Please refer to our documentation above and documentation provided by other PSICQUIC providers if you plan to combine results from multiple services.
