Difference between revisions of "Donaldson Group"
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| + | [[Image:iRefIndex_logo.png|100x100px]]|| [[iRefIndex|'''iRefIndex''']]<br/> iRefIndex (interaction Reference Index) provides an index of protein interactions available in a number of primary interaction databases including BIND, BioGRID, DIP, HPRD, IntAct, MINT, MPact, MPPI and OPHID. This index allows the user to search for a protein and retrieve a non-redundant list of interactors for that protein. | ||
iRefIndex uses the Sequence Global Unique Identifier (SEGUID) to group proteins and interactions into redundant groups. This method allows users to integrate their own data with the iRefIndex in a way that ensures proteins with the exact same sequence will be represented only once. | iRefIndex uses the Sequence Global Unique Identifier (SEGUID) to group proteins and interactions into redundant groups. This method allows users to integrate their own data with the iRefIndex in a way that ensures proteins with the exact same sequence will be represented only once. | ||
Revision as of 23:08, 28 August 2008
The Donaldson Group at the Biotechnology Centre of Oslo
Group leader: Ian Donaldson Ph.D
Research Interests
Our interests include computer modelling of biological processes, especially those related to cell signaling. Modelling requires access to a variety of data that needs to be collected or generated. These activities include data warehousing, data mining, prediction of protein-protein interactions and biological text-mining.
Our recent work on a consolidated protein interaction database can be found at http://irefindex.uio.no/ .
Projects
 
iRefIndex uses the Sequence Global Unique Identifier (SEGUID) to group proteins and interactions into redundant groups. This method allows users to integrate their own data with the iRefIndex in a way that ensures proteins with the exact same sequence will be represented only once. | |
Group Members
- Ian Donaldson
- Katarina Michalickova
- Paul Boddie
- Sabry Razick
- Antonio Mora
- Hanna Nemchenko
