Difference between revisions of "Protein identifier mapping"
From irefindex
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We have made a file which provides mappings between iRefIndex identifiers and popular external identifiers. The file is a tab delimited text file and the first row starting with the "#" provides the column headers. | We have made a file which provides mappings between iRefIndex identifiers and popular external identifiers. The file is a tab delimited text file and the first row starting with the "#" provides the column headers. | ||
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| + | File download location: | ||
The column descriptions: | The column descriptions: | ||
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| 5||rogid||String version of the redundant object group (64 bit version of the hash digest of primary amino acid sequence with the NSBI taxonomy identifier appended at the end) | | 5||rogid||String version of the redundant object group (64 bit version of the hash digest of primary amino acid sequence with the NSBI taxonomy identifier appended at the end) | ||
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| − | | 6||icrogid||Integer version of the canonical redundant object group (A selected irogid to represent the canonical group) | + | | 6||icrogid||Integer version of the canonical(1) redundant object group (A selected irogid to represent the canonical group) |
|- | |- | ||
| − | | 7||crogid||String version of the canonical redundant object group (A selected rogid to represent the canonical group) | + | | 7||crogid||String version of the canonical(1) redundant object group (A selected rogid to represent the canonical group) |
|- | |- | ||
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|} | |} | ||
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| + | (1) Please refer the following page for details on canonicalization process. | ||
| + | http://irefindex.uio.no/wiki/Canonicalization | ||
Revision as of 09:01, 21 October 2010
Last edited: 2010-10-21
We have made a file which provides mappings between iRefIndex identifiers and popular external identifiers. The file is a tab delimited text file and the first row starting with the "#" provides the column headers.
File download location:
The column descriptions:
| Column number | Column name | Description |
| 1 | db | Source of the external identifier (e.g. UniProt, RefSeq) |
| 2 | acc | The external identifier (e.g. Q4U9M9) |
| 3 | entrezGeneid | Entrez gene id. This is provided only for RefSeq identifiers |
| 4 | irogid | Integer version redundant group identifier(e.g. 3156116, current maximum value=, this is a MySQL ). |
| 5 | rogid | String version of the redundant object group (64 bit version of the hash digest of primary amino acid sequence with the NSBI taxonomy identifier appended at the end) |
| 6 | icrogid | Integer version of the canonical(1) redundant object group (A selected irogid to represent the canonical group) |
| 7 | crogid | String version of the canonical(1) redundant object group (A selected rogid to represent the canonical group) |
(1) Please refer the following page for details on canonicalization process. http://irefindex.uio.no/wiki/Canonicalization
