Difference between revisions of "Sources iRefIndex 15.0"
From irefindex
(Created page with "Last edited: {{REVISIONYEAR}}-{{padleft:{{REVISIONMONTH}}|2}}-{{REVISIONDAY2}} Applies to iRefIndex release: 14.0 Release date: 07-04-2013 Authors: Ian Donaldson Database:...") |
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BIOGRID DOWNLOAD_FILES BIOGRID-ALL-3.4.153.psi25.zip | BIOGRID DOWNLOAD_FILES BIOGRID-ALL-3.4.153.psi25.zip | ||
| − | + | CORUM DATE 2017-07-13 23:22:20 | |
| + | CORUM RELEASE_URL http://mips.helmholtz-muenchen.de/corum/download/ | ||
| + | CORUM DOWNLOAD_FILES allComplexes.xml.zip | ||
| − | + | DIP DOWNLOAD ftp://albot:9eBCcKmL@dip.doe-mbi.ucla.edu/2017/mif25/dip20170205.mif25.gz | |
| − | + | DIP FILENAME dip20170205.mif25 | |
| − | + | DIP DATE 02/05/2017 | |
| + | DIP RELEASE_URL http://dip.doe-mbi.ucla.edu/dip/Download.cgi?SM=3 | ||
| − | + | HPRD DATE 2017-10-25 19:43:21 | |
| − | + | HPRD RELEASE_URL file:///data/alex/ | |
| − | + | HPRD DOWNLOAD_FILES HPRD_PSIMI_041310.tar.gz | |
| − | |||
| − | + | INTACT DATE 2017-09-03 00:26:00 | |
| − | + | INTACT RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psi25/ | |
| + | INTACT DOWNLOAD_FILES pmidMIF25.zip | ||
| − | + | INTCOMPLEX DATE 2017-09-03 00:26:00 | |
| − | + | INTCOMPLEX RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/intact/complex/current/psi25/ | |
| + | INTCOMPLEX DOWNLOAD_FILES complexesMIF25.zip | ||
| − | + | I2D_IMEX DATE 2017-10-25 19:44:20 | |
| − | + | I2D_IMEX RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/i2d/webservices/current/search/query/*?format=tab27 | |
| − | + | I2D_IMEX DOWNLOAD_FILES i2dimex_psicquic.txt | |
| − | + | INNATEDB DATE 2017-10-22 18:58:16 | |
| − | + | INNATEDB RELEASE_URL http://www.innatedb.com/download/interactions/ | |
| − | + | INNATEDB DOWNLOAD_FILES innatedb_all.mitab.gz | |
| − | + | MATRIXDB DATE 2016-06-17 14:43:31 | |
| − | + | MATRIXDB RELEASE_URL http://matrixdb.univ-lyon1.fr/download/ | |
| − | + | MATRIXDB DOWNLOAD_FILES matrixdb_FULL.tab.gz | |
| − | |||
| − | |||
| − | |||
MPACT DATE 2008-09-30 22:00:00 | MPACT DATE 2008-09-30 22:00:00 | ||
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MPIDB DATE 2015-03-16 11:56:28 | MPIDB DATE 2015-03-16 11:56:28 | ||
MPIDB RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/mpidb/webservices/current/search/query/*?format=tab27 | MPIDB RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/mpidb/webservices/current/search/query/*?format=tab27 | ||
| − | MPIDB DOWNLOAD_FILES mpidb_psicquic.txt | + | MPIDB DOWNLOAD_FILES mpidb_psicquic.txt |
| − | REACTOME DATE | + | REACTOME DATE 2017-10-25 19:44:42 |
| − | REACTOME RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/reactome/webservices/current/search/query/* | + | REACTOME RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/reactome/webservices/current/search/query/* |
| − | REACTOME DOWNLOAD_FILES reactome_psicquic.txt | + | REACTOME DOWNLOAD_FILES reactome_psicquic.txt |
| − | + | VIRUSHOST DATE 2017-10-25 19:44:55 | |
| − | + | VIRUSHOST RELEASE_URL http://virhostnet.prabi.fr:9090/psicquic/webservices/current/search/query/* | |
| − | + | VIRUSHOST DOWNLOAD_FILES virushost_psicquic.txt | |
| − | + | UNIPROTPP DATE 2017-10-25 19:45:08 | |
| − | + | UNIPROTPP RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/uniprot/webservices/current/search/query/*?format=tab27 | |
| − | + | UNIPROTPP DOWNLOAD_FILES uniprotpp_psicquic.txt | |
| − | + | HPIDB DATE 2017-10-25 19:45:12 | |
| − | + | HPIDB RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/hpidb/webservices/current/search/query/*?format=tab27 | |
| − | + | HPIDB DOWNLOAD_FILES hpidb_psicquic.txt | |
| − | + | BHF_UCL DATE 2017-10-25 19:45:27 | |
| − | + | BHF_UCL RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/bhf-ucl/webservices/current/search/query/*?format=tab27 | |
| − | + | BHF_UCL DOWNLOAD_FILES bhfucl_psicquic.txt | |
| − | + | MBINFO DATE 2017-10-25 19:45:28 | |
| − | + | MBINFO RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/mbinfo/webservices/current/search/query/*?format=tab27 | |
| + | MBINFO DOWNLOAD_FILES mbinfo_psicquic.txt | ||
| − | + | MOLCON DATE 2017-10-25 19:45:29 | |
| − | + | MOLCON RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/molcon/webservices/current/search/query/*?format=tab27 | |
| − | + | MOLCON DOWNLOAD_FILES molcon_psicquic.txt | |
| − | + | QUICKGO DATE 2017-11-24 07:41:34 | |
| − | + | QUICKGO RELEASE_URL http://www.ebi.ac.uk/QuickGO/psicquic/webservices/current/search/query/* | |
| − | + | QUICKGO DOWNLOAD_FILES quickgo_psicquic.txt | |
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Supporting data sets | Supporting data sets | ||
| − | PSI_MI DATE | + | PSI_MI DATE 2017-10-25 19:45:31 |
| − | PSI_MI RELEASE_URL http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/mi/rel25/data/ | + | PSI_MI RELEASE_URL http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/mi/rel25/data/ |
| − | PSI_MI DOWNLOAD_FILES psi-mi25.obo | + | PSI_MI DOWNLOAD_FILES psi-mi25.obo |
| − | TAXONOMY DATE | + | TAXONOMY DATE 2017-10-25 17:20:00 |
| − | TAXONOMY RELEASE_URL ftp://ftp.ncbi.nih.gov/pub/taxonomy/ | + | TAXONOMY RELEASE_URL ftp://ftp.ncbi.nih.gov/pub/taxonomy/ |
| − | TAXONOMY DOWNLOAD_FILES taxdump.tar.gz | + | TAXONOMY DOWNLOAD_FILES taxdump.tar.gz |
DIG DATE 2015-03-13 10:08:25 | DIG DATE 2015-03-13 10:08:25 | ||
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DIG DOWNLOAD_FILES morbidmap14062010.txt | DIG DOWNLOAD_FILES morbidmap14062010.txt | ||
| − | + | LY VERSION 2017_10 | |
| − | FLY DATE | + | FLY DATE 25-Oct-2017 |
| − | FLY RELEASE_URL http://www.uniprot.org/docs/ | + | FLY RELEASE_URL http://www.uniprot.org/docs/ |
| − | FLY DOWNLOAD_FILES fly.txt | + | FLY DOWNLOAD_FILES fly.txt |
| − | GENE RELEASE_URL ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ | + | GENE DATE 2017-10-25 01:26:00 |
| − | GENE DOWNLOAD_FILES gene2refseq.gz gene_info.gz gene2go.gz gene_history.gz | + | GENE RELEASE_URL ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ |
| + | GENE DOWNLOAD_FILES gene2refseq.gz gene_info.gz gene2go.gz gene_history.gz | ||
| + | |||
| + | GENPEPT DATE 2017-10-17 20:53:00 | ||
| + | GENPEPT RELEASE_URL ftp://ftp.ncbi.nih.gov/ncbi-asn1/protein_fasta/ | ||
| + | GENPEPT DOWNLOAD_FILES gb*.fsa_aa.gz | ||
IPI DATE 2015-03-13 10:13:26 | IPI DATE 2015-03-13 10:13:26 | ||
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MMDB DATE 2014-05-28 22:00:00 | MMDB DATE 2014-05-28 22:00:00 | ||
MMDB RELEASE_URL ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ | MMDB RELEASE_URL ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ | ||
| − | MMDB DOWNLOAD_FILES table | + | MMDB DOWNLOAD_FILES table |
| + | |||
| + | PDB DATE 2017-10-25 02:00:00 | ||
| + | PDB RELEASE_URL ftp://ftp.ncbi.nih.gov/blast/db/FASTA/ | ||
| + | PDB DOWNLOAD_FILES pdbaa.gz | ||
| − | + | REFSEQ DATE 2017-09-15 05:49:00 | |
| − | + | REFSEQ RELEASE_URL ftp://ftp.ncbi.nih.gov/refseq/release//complete/ | |
| − | + | REFSEQ DOWNLOAD_FILES complete*.protein.gpff.gz | |
| − | + | UNIPROT VERSION 2017_10 | |
| − | + | UNIPROT DATE 25-Oct-2017 | |
| − | + | UNIPROT RELEASE_URL ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/ | |
| + | UNIPROT DOWNLOAD_FILES uniprot_sprot.dat.gz uniprot_trembl.dat.gz uniprot_sprot_varsplic.fasta.gz reldate.txt | ||
| − | + | YEAST VERSION 2017_10 | |
| − | + | YEAST DATE 25-Oct-2017 | |
| − | + | YEAST RELEASE_URL http://www.uniprot.org/docs/ | |
| − | + | YEAST DOWNLOAD_FILES yeast.txt | |
| − | |||
| − | |||
| − | |||
| − | |||
</pre> | </pre> | ||
Revision as of 15:39, 4 February 2018
Last edited: 2018-02-04
Applies to iRefIndex release: 14.0
Release date: 07-04-2013
Authors: Ian Donaldson
Database: iRefIndex (http://irefindex.org)
Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.
Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.
- For statistics on the full dataset please refer to: http://irefindex.org/wiki/index.php?title=Statistics_iRefIndex_14.0
Interaction data sets BIND DATE 2005-05-25 BIND RELEASE_URL http://bond.unleashedinformatics.com/downloads/data/BIND/data/bindflatfiles/bindindex/ BIND DOWNLOAD_FILES 20060525*.txt BIND_TRANSLATION DATE 2014-05-20 20:32:00 BIND_TRANSLATION RELEASE_URL http://download.baderlab.org/BINDTranslation/release1_0/ BIND_TRANSLATION DOWNLOAD_FILES BINDTranslation_v1_xml_AllSpecies.tar.gz BIOGRID DATE 2017-09-30 15:36:22 BIOGRID RELEASE_URL https://thebiogrid.org/downloads/archives/Release%20Archive/BIOGRID-3.4.153/ BIOGRID DOWNLOAD_FILES BIOGRID-ALL-3.4.153.psi25.zip CORUM DATE 2017-07-13 23:22:20 CORUM RELEASE_URL http://mips.helmholtz-muenchen.de/corum/download/ CORUM DOWNLOAD_FILES allComplexes.xml.zip DIP DOWNLOAD ftp://albot:9eBCcKmL@dip.doe-mbi.ucla.edu/2017/mif25/dip20170205.mif25.gz DIP FILENAME dip20170205.mif25 DIP DATE 02/05/2017 DIP RELEASE_URL http://dip.doe-mbi.ucla.edu/dip/Download.cgi?SM=3 HPRD DATE 2017-10-25 19:43:21 HPRD RELEASE_URL file:///data/alex/ HPRD DOWNLOAD_FILES HPRD_PSIMI_041310.tar.gz INTACT DATE 2017-09-03 00:26:00 INTACT RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psi25/ INTACT DOWNLOAD_FILES pmidMIF25.zip INTCOMPLEX DATE 2017-09-03 00:26:00 INTCOMPLEX RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/intact/complex/current/psi25/ INTCOMPLEX DOWNLOAD_FILES complexesMIF25.zip I2D_IMEX DATE 2017-10-25 19:44:20 I2D_IMEX RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/i2d/webservices/current/search/query/*?format=tab27 I2D_IMEX DOWNLOAD_FILES i2dimex_psicquic.txt INNATEDB DATE 2017-10-22 18:58:16 INNATEDB RELEASE_URL http://www.innatedb.com/download/interactions/ INNATEDB DOWNLOAD_FILES innatedb_all.mitab.gz MATRIXDB DATE 2016-06-17 14:43:31 MATRIXDB RELEASE_URL http://matrixdb.univ-lyon1.fr/download/ MATRIXDB DOWNLOAD_FILES matrixdb_FULL.tab.gz MPACT DATE 2008-09-30 22:00:00 MPACT RELEASE_URL local copy MPACT DOWNLOAD_FILES mpact-complete.psi25.xml.gz MPPI DATE 2004-06-01 15:37:37 MPPI RELEASE_URL local copy MPPI DOWNLOAD_FILES mppi.gz MPIDB DATE 2015-03-16 11:56:28 MPIDB RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/mpidb/webservices/current/search/query/*?format=tab27 MPIDB DOWNLOAD_FILES mpidb_psicquic.txt REACTOME DATE 2017-10-25 19:44:42 REACTOME RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/reactome/webservices/current/search/query/* REACTOME DOWNLOAD_FILES reactome_psicquic.txt VIRUSHOST DATE 2017-10-25 19:44:55 VIRUSHOST RELEASE_URL http://virhostnet.prabi.fr:9090/psicquic/webservices/current/search/query/* VIRUSHOST DOWNLOAD_FILES virushost_psicquic.txt UNIPROTPP DATE 2017-10-25 19:45:08 UNIPROTPP RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/uniprot/webservices/current/search/query/*?format=tab27 UNIPROTPP DOWNLOAD_FILES uniprotpp_psicquic.txt HPIDB DATE 2017-10-25 19:45:12 HPIDB RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/hpidb/webservices/current/search/query/*?format=tab27 HPIDB DOWNLOAD_FILES hpidb_psicquic.txt BHF_UCL DATE 2017-10-25 19:45:27 BHF_UCL RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/bhf-ucl/webservices/current/search/query/*?format=tab27 BHF_UCL DOWNLOAD_FILES bhfucl_psicquic.txt MBINFO DATE 2017-10-25 19:45:28 MBINFO RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/mbinfo/webservices/current/search/query/*?format=tab27 MBINFO DOWNLOAD_FILES mbinfo_psicquic.txt MOLCON DATE 2017-10-25 19:45:29 MOLCON RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/molcon/webservices/current/search/query/*?format=tab27 MOLCON DOWNLOAD_FILES molcon_psicquic.txt QUICKGO DATE 2017-11-24 07:41:34 QUICKGO RELEASE_URL http://www.ebi.ac.uk/QuickGO/psicquic/webservices/current/search/query/* QUICKGO DOWNLOAD_FILES quickgo_psicquic.txt Supporting data sets PSI_MI DATE 2017-10-25 19:45:31 PSI_MI RELEASE_URL http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/mi/rel25/data/ PSI_MI DOWNLOAD_FILES psi-mi25.obo TAXONOMY DATE 2017-10-25 17:20:00 TAXONOMY RELEASE_URL ftp://ftp.ncbi.nih.gov/pub/taxonomy/ TAXONOMY DOWNLOAD_FILES taxdump.tar.gz DIG DATE 2015-03-13 10:08:25 DIG RELEASE_URL file:///storage/localdata/dig/ DIG DOWNLOAD_FILES morbidmap14062010.txt LY VERSION 2017_10 FLY DATE 25-Oct-2017 FLY RELEASE_URL http://www.uniprot.org/docs/ FLY DOWNLOAD_FILES fly.txt GENE DATE 2017-10-25 01:26:00 GENE RELEASE_URL ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ GENE DOWNLOAD_FILES gene2refseq.gz gene_info.gz gene2go.gz gene_history.gz GENPEPT DATE 2017-10-17 20:53:00 GENPEPT RELEASE_URL ftp://ftp.ncbi.nih.gov/ncbi-asn1/protein_fasta/ GENPEPT DOWNLOAD_FILES gb*.fsa_aa.gz IPI DATE 2015-03-13 10:13:26 IPI RELEASE_URL file:///storage/localdata/ipi/ IPI DOWNLOAD_FILES *.fasta.gz MMDB DATE 2014-05-28 22:00:00 MMDB RELEASE_URL ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ MMDB DOWNLOAD_FILES table PDB DATE 2017-10-25 02:00:00 PDB RELEASE_URL ftp://ftp.ncbi.nih.gov/blast/db/FASTA/ PDB DOWNLOAD_FILES pdbaa.gz REFSEQ DATE 2017-09-15 05:49:00 REFSEQ RELEASE_URL ftp://ftp.ncbi.nih.gov/refseq/release//complete/ REFSEQ DOWNLOAD_FILES complete*.protein.gpff.gz UNIPROT VERSION 2017_10 UNIPROT DATE 25-Oct-2017 UNIPROT RELEASE_URL ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/ UNIPROT DOWNLOAD_FILES uniprot_sprot.dat.gz uniprot_trembl.dat.gz uniprot_sprot_varsplic.fasta.gz reldate.txt YEAST VERSION 2017_10 YEAST DATE 25-Oct-2017 YEAST RELEASE_URL http://www.uniprot.org/docs/ YEAST DOWNLOAD_FILES yeast.txt
All iRefIndex Pages
Follow this link for a listing of all iRefIndex related pages (archived and current).
