Statistics iRefIndex 15.0

Interactions available from major taxonomies (corrected)

NCBI taxonomy identifier	Scientific name	Number of interactions
9606	Homo sapiens	593178
559292	Saccharomyces cerevisiae S288C	125372
7227	Drosophila melanogaster	69867
10090	Mus musculus	61287
3702	Arabidopsis thaliana	49690
6239	Caenorhabditis elegans	16728
83333	Escherichia coli K-12	16605
192222	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	11930
10116	Rattus norvegicus	11390
284812	Schizosaccharomyces pombe 972h-	9780
381518	Influenza A virus (A/Wilson-Smith/1933(H1N1))	4973
632	Yersinia pestis	3947
243276	Treponema pallidum subsp. pallidum str. Nichols	3642
1111708	Synechocystis sp. PCC 6803 substr. Kazusa	3270

Interactions

	BHF_UCL	BIND	BIND_TRANSLATION	BIOGRID	CORUM	DIP	HPIDB	HPRD	I2D_IMEX	INNATEDB	INTACT	INTCOMPLEX	MATRIXDB	MBINFO	MOLCON	MPACT	MPIDB	MPPI	QUICKGO	REACTOME	UNIPROTPP	VIRUSHOST
BHF_UCL	1254	17	22	244	13	36	1	31	3	18	1242	10	144	1	1			11	294	56	3	6
BIND		49520	45434	21065	224	24230	100	1801	22	327	22723	243	325	10	7	6304	5	270	1268	781	513	301
BIND_TRANSLATION			60145	23267	220	25556	104	2600	28	481	24883	193	407	12	11	6264	7	353	1561	960	526	348
BIOGRID				477717	205	31521	86	5923	69	1685	65750	258	3749	19	79	4239		117	4974	6588	1606	8336
CORUM					3372	249	2	189	9	91	593	137	55	3	7			20	270	191	82	33
DIP						77459	24	644	36	493	38274	309	935	7	19	6772	63	69	1757	1187	612	401
HPIDB							1526	42		13	1521	6	13					1	289	24	6	27
HPRD								40542	16	855	5897	77	1249	15	14			108	1169	2159	225	3147
I2D_IMEX									434	18	433	6	71		2			6	43	40	5	2
INNATEDB										18569	1587	28	1450	5	10			40	678	893	118	217
INTACT											289572	674	11412	330	211	3517	840	186	5808	3327	5809	24123
INTCOMPLEX												1712	36	1	2	125	6	15	134	125	72	22
MATRIXDB													14629	25	27			39	631	866	231	2968
MBINFO														331	2			1	13	15	3	5
MOLCON															212			3	23	24	2	3
MPACT																13398			116		238
MPIDB																	893		51		2
MPPI																		776	105	67	16	15
QUICKGO																			26679	1268	629	291
REACTOME																				130128	264	501
UNIPROTPP																					5856	82
VIRUSHOST																						45497
(Exclusive to source)	5	2703	9214	383991	2363	20744	5	28321	13903	168659	869	1042	1	5700	52	234	15965	119132	27	20077

Interactors

	BHF_UCL	BIND	BIND_TRANSLATION	BIOGRID	CORUM	DIP	HPIDB	HPRD	I2D_IMEX	INNATEDB	INTACT	INTCOMPLEX	MATRIXDB	MBINFO	MOLCON	MPACT	MPIDB	MPPI	QUICKGO	REACTOME	UNIPROTPP	VIRUSHOST
BHF_UCL	1460	503	550	870	501	503	246	533	75	598	1460	148	681	29	53		2	110	852	519	309	756
BIND		30246	26519	16478	2147	15790	652	2640	241	2582	19803	1970	2261	119	131	4353	56	597	5415	1930	2461	2493
BIND_TRANSLATION			36228	17301	2245	16643	699	3080	271	2905	21246	1917	2543	133	146	3997	65	667	6017	2192	2496	2746
BIOGRID				57890	2908	16304	1024	5238	273	4812	36422	2461	4053	129	185	4530	7	466	10830	3306	3436	5579
CORUM					5338	2314	688	1875	237	2147	4751	912	2012	96	158		3	442	3309	1884	1419	2419
DIP						27169	672	2060	284	2629	25255	2304	2566	118	154	4569	258	464	6232	1996	2643	2630
HPIDB							2277	806	89	880	2277	158	905	28	58	4	6	124	1239	737	465	1491
HPRD								9842	186	2918	6886	528	3251	55	118		7	263	3058	2879	1163	4235
I2D_IMEX									448	273	448	89	301	14	56		2	87	350	217	175	254
INNATEDB										8627	6841	678	3379	91	170		10	425	3891	2318	1498	3532
INTACT											86241	3363	6913	274	275	4803	930	749	15508	4929	5524	9299
INTCOMPLEX												3777	568	17	37	1221	54	142	1507	686	917	634
MATRIXDB													7068	95	163		10	384	3433	2714	1376	4367
MBINFO														274	17	2	1	39	170	74	61	81
MOLCON															275			52	197	148	121	182
MPACT																4995			519		900	3
MPIDB																	930	1	169	8	19	10
MPPI																		833	667	315	278	321
QUICKGO																			23728	2635	2929	3805
REACTOME																				5938	1078	3108
UNIPROTPP																					5524	1601
VIRUSHOST																						10186
(Exclusive to source)	2560	6390	17594	280	633	1868	971	28777	224	15	70	18	5842	595	706

Summary of mapping interaction records to RIGs (Table 5)

Source	Total records	Protein-related interactions	PPI assigned to RIGID	%	Unique RIGIDs	%
BHF_UCL	1931	1919	1919	100.00	1254	65.35
BIND	157736	91309	68064	74.54	49520	72.76
BIND_TRANSLATION	192923	84138	80606	95.80	60145	74.62
BIOGRID	1476473	664281	661220	99.54	477717	72.25
CORUM	3633	3633	3630	99.92	3372	92.89
DIP	81731	80134	79879	99.68	77459	96.97
HPIDB	2905	2783	2777	99.78	1526	54.95
HPRD	83022	83022	82983	99.95	40542	48.86
I2D_IMEX	892	891	891	100.00	434	48.71
INNATEDB	25927	25513	24971	97.88	18569	74.36
INTACT	515301	466222	466089	99.97	289572	62.13
INTCOMPLEX	1988	1746	1746	100.00	1712	98.05
MATRIXDB	26277	26256	26256	100.00	14629	55.72
MBINFO	542	522	522	100.00	331	63.41
MOLCON	377	375	375	100.00	212	56.53
MPACT	16504	16504	16373	99.21	13398	81.83
MPIDB	1505	1504	1425	94.75	893	62.67
MPPI	1814	1758	1578	89.76	776	49.18
QUICKGO	65026	53870	51762	96.09	26679	51.54
REACTOME	141996	141996	141844	99.89	130128	91.74
UNIPROTPP	10426	10341	10341	100.00	5856	56.63
VIRUSHOST	50146	50146	50127	99.96	45497	90.76
(All)	2859075	1808863	1775378	98.15	967265	54.48

Assignment of protein interactors to ROGs (Table 3)

Source	Protein interactors	Assigned	%	Arbitrary	Matching sequence	New or obsolete sequence	Unassigned	Unique proteins
BHF_UCL	5030	5030	100.00	0	0	0	0	1460
BIND	252251	215207	85.31	54	0	0	37044	30246
BIND_TRANSLATION	257681	250419	97.18	20546	0	0	7262	36228
BIOGRID	59042	58123	98.44	3199	0	0	919	57890
CORUM	15211	15208	99.98	0	0	0	3	5338
DIP	28066	27916	99.47	670	0	0	150	27169
HPIDB	7376	7370	99.92	0	0	0	6	2277
HPRD	123812	123812	100.00	13787	98296	121	0	9842
I2D_IMEX	1932	1932	100.00	0	0	0	0	448
INNATEDB	58745	58087	98.88	1	0	0	658	8627
INTACT	399851	399668	99.95	201	58	438	183	86241
INTCOMPLEX	6634	6634	100.00	0	0	0	0	3777
MATRIXDB	52533	52533	100.00	1	0	0	0	7068
MBINFO	1136	1136	100.00	0	0	0	0	274
MOLCON	862	862	100.00	0	0	0	0	275
MPACT	40349	40199	99.63	0	0	0	150	4995
MPIDB	3238	3090	95.43	0	0	0	148	930
MPPI	3568	3361	94.20	16	0	0	207	833
QUICKGO	118891	116735	98.19	0	0	0	2156	23728
REACTOME	283992	283839	99.95	640	0	0	153	5938
UNIPROTPP	25138	25138	100.00	1	0	0	0	5524
VIRUSHOST	100292	100273	99.98	4	0	0	19	10186
(All)	1845630	1796572	97.34	39120	98354	559	49058	135893

ROG summary

	BHF_UCL	BIND	BIND_TRANSLATION	BIOGRID	CORUM	DIP	HPIDB	HPRD	I2D_IMEX	INNATEDB	INTACT	INTCOMPLEX	MATRIXDB	MBINFO	MOLCON	MPACT	MPIDB	MPPI	QUICKGO	REACTOME	UNIPROTPP	VIRUSHOST
P	5023		194804	46262	15190		7366		1914	58084	398235	6608	52165	1136	862		3082		113957	270664	25105	98051
P+IN											386
P+N											48
PD		128348		6863							5							2994
PD+IN											1
PD+L		38
PD+LQ			10170
PD+XQ			26
PDQ			28443
PGD			641	1742							1
PGD+L			6273	3190							6
PGD+X				2
PT			2813	1	5						7					30579	2		2778			839
PTD		86728		2							2							44
PTD+LQ			4042
PTDQ			2488
PTGD			15
PTGD+L			23
PTM											3
PU	7		27		13		4		18	2	681	26	367				6			12535	32	81
PU+L			17							1	154		1							640		4
PU+O											44
PU+X			610								2											5
PUD		13		7														145
PUD+L		7		5														13
PUD+X		60																162
PUT			4								12					2527						1293
PUT+L			21								41										1
PUT+O											14
PUTD		4
PUTD+L		9																3
PV											9
S			2	45		14032		85			11
S+L				4		293		525
S+N											3
S+O								305
S+X						263
SD						5418		2474			1
SD+L						263		328
SD+N								121
SD+O								11600
SD+X						1267
SGD								580
SGD+L								2529
SGD+O								15580
ST						4890		105			2					7093
ST+L						30		3311
ST+O								859
STD						722		6736
STD+L						9		498
STD+O								29855
STGD								1628
STGD+L								6556
STGD+O								39958
SUD						62
SUD+L						45		25
SUD+O								5
SUD+X						569
SUTD						23
SUTD+L						30		15
SUTD+O								134