Statistics

Number of protein references successfully assigned to ROG's and broken down by assignment score

Character	Description of feature (when the value is 1)	Frequency
D	The source database (D) listed in the interaction record is different than what is expected for the given accession for the protein. In specific cases, this difference is tolerated and the assignment is made.	12719(0.0202%)
E	The protein reference was a retired NCBI Identifier. NCBI\'s eUtils (E) were used to retrieve the current accession and/or sequence.	10909(0.0174%)
G	The interaction record\'s reference for the protein was an EntrezGene (G) identifier. The corresponding products of the gene were used to make the assignment.	0(0.0%)
L	More than one possible assignment is possible (see + above). The assignment with the largest (L) SEGUID is arbitrarily chosen (see Methods)	9150(0.0146%)
M	The protein reference listed by the interaction record was a typographical modification (M) of a known accession. In specific cases, this variation is tolerated and the assignment is made.	1882(0.0030%)
+	More than one possible assignment is possible (+). This case may arise in one of three ways. 1) The reference supplied by the interaction record requires updating but more than one possibility exists. For example, Q7XJL8 was found to be a secondary accession in three separate UniProt records (Q3EBZ2, Q6DR20, and Q8GWA9). 2) The secondary references supplied by the interaction record point to more than one unique protein sequence. 3) An EntrezGene identifier is provided in the interaction record as a protein reference. This identifier points to more than one protein product. An attempt is made to resolve this ambiguity as indicated by ROG score features O, X or L (see below).	9172(0.0146%)
N	The protein reference, taxonomy identifier and sequence for the protein as provided in the interaction record are used to make a new entry in the SEGUID table. The protein interactor is assigned the newly (N) generated ROG identifier.	14485(0.0231%)
O	More than one possible assignment is possible (see + above). The assignment chosen has a SEGUID that is identical to the SEGUID of the original (O) sequence provided in the interaction record.	22(0.0%)
I	The protein reference used was an NCBI GenInfo Identifier (I).	13495(0.0215%)
U	The protein reference listed in the interaction record and used to make the assignment was a secondary UniProt accession and was updated (U) to a primary UniProt accession in order to make the assignment.	20644(0.0329%)
T	The taxonomy (T) identifier for the protein (as supplied by the interaction record) differed from what was found in the protein sequence record. This discrepancy was tolerated and the assignment was made	24056(0.0383%)
V	The protein reference listed by the interaction record contained version (V) information that was ignored. For example, RefSeq accession.version NP_012420.1 was listed but treated as RefSeq accession NP_012420.	0(0.0%)
Q	The protein reference used to make the assignment was of the type \'see-also\'. See PSI-MI Path: entrySet/entry/interactorList/interactor/xref/primaryRef/refType = \'see-also\'.	27(0.0%)
P	The interaction record\'s primary (P) reference for the protein was used to make the assignment	584548(0.9304%)
S	One of the interaction record\'s secondary (S) references for the protein was used to make the assignment	43754(0.0696%)
X	More than one possible assignment is possible (see + above). The assignment chosen has the same taxonomy (X) identifier as listed in the interaction record	35(1.0E-4%)

Decimal_score	Binary_flag	String_score	Score_class	Proteins	Percentage	BIND	BioGrid	DIP	MINT	HPRD	OPHID	MIIP	MPACT
86274	010101000100000010	SLEN+	-1	1	0.0002%	0	1	0	0	0	0	0	0
81937	010100000000010001	PTEN	-1	18	0.0028%	0	0	0	0	0	0	18	0
65681	010000000010010001	PTMN	-1	2	0.0003%	0	0	0	0	0	0	2	0
5378	000001010100000010	SXL+	-1	1	0.0002%	0	0	0	0	0	0	0	0
131077	100000000000000101	PUQ	-1	1	0.0002%	0	0	0	0	0	0	0	0
146	000000000010010010	STM	-1	3	0.0005%	0	3	0	0	0	0	0	0
789	000000001100010101	PUTO+	-1	15	0.0024%	0	0	0	0	0	0	0	0
1	000000000000000001	P	1	523340	82.6130%	232755	7313	0	74939	0	126446	0	0
8193	000010000000000001	PI	1	19	0.0030%	0	2	0	0	0	0	0	0
8258	000010000001000010	SDI	1	1066	0.1683%	1044	22	0	0	0	0	0	0
8257	000010000001000001	PDI	1	40	0.0063%	0	0	0	0	0	0	0	0
8194	000010000000000010	SI	1	11457	1.8086%	11287	170	0	0	0	0	0	0
130	000000000010000010	SM	1	1190	0.1879%	0	1190	0	0	0	0	0	0
66	000000000001000010	SD	1	6	0.0009%	0	6	0	0	0	0	0	0
2	000000000000000010	S	1	8209	1.2958%	0	7754	0	236	0	0	0	0
65	000000000001000001	PD	1	9244	1.4592%	8091	1134	0	19	0	0	0	0
129	000000000010000001	PM	1	488	0.0770%	473	1	0	0	0	0	0	0
5	000000000000000101	PU	2	19850	3.1335%	0	0	0	346	0	18835	0	0
6	000000000000000110	SU	2	286	0.0451%	0	275	0	5	0	0	0	0
16385	000100000000000001	PE	2	246	0.0388%	0	0	0	0	0	0	0	0
774	000000001100000110	SUO+	2	1	0.0002%	0	0	0	0	0	0	0	0
773	000000001100000101	PUO+	2	6	0.0009%	0	0	0	1	0	0	0	0
16386	000100000000000010	SE	2	5434	0.8578%	5434	0	0	0	0	0	0	0
8274	000010000001010010	STDI	3	66	0.0104%	29	37	0	0	0	0	0	0
8210	000010000000010010	STI	3	834	0.1317%	826	8	0	0	0	0	0	0
8273	000010000001010001	PTDI	3	13	0.0021%	0	0	0	0	0	0	0	0
81	000000000001010001	PTD	3	1483	0.2341%	1483	0	0	0	0	0	0	0
18	000000000000010010	ST	3	1383	0.2183%	0	1380	0	0	0	0	0	0
17	000000000000010001	PT	3	19265	3.0411%	11825	0	0	1742	0	122	3072	0
145	000000000010010001	PTM	3	199	0.0314%	132	0	0	0	0	0	67	0
16402	000100000000010010	STE	4	316	0.0499%	316	0	0	0	0	0	0	0
16401	000100000000010001	PTE	4	2	0.0003%	0	0	0	0	0	0	0	0
4357	000001000100000101	PUL+	5	84	0.0133%	0	0	0	0	0	84	0	0
4373	000001000100010101	PUTL+	5	187	0.0295%	0	0	0	1	0	0	178	0
4354	000001000100000010	SL+	5	8843	1.3959%	0	8843	0	0	0	0	0	0
131073	100000000000000001	PQ	5	2	0.0003%	0	0	0	0	0	0	0	0
5381	000001010100000101	PUXL+	5	34	0.0054%	0	0	0	5	0	19	0	0
21	000000000000010101	PUT	5	180	0.0284%	0	0	0	6	0	5	142	0
131089	100000000000010001	PTQ	5	24	0.0038%	0	0	0	0	0	0	0	0
81938	010100000000010010	STEN	6	22	0.0035%	22	0	0	0	0	0	0	0
81922	010100000000000010	SEN	6	4636	0.7318%	4635	0	0	1	0	0	0	0
81921	010100000000000001	PEN	6	234	0.0369%	0	0	0	0	0	0	0	0
65601	010000000001000001	PDN	6	801	0.1264%	799	2	0	0	0	0	0	0
65537	010000000000000001	PN	6	8727	1.3776%	2322	0	0	2763	0	653	11	0
65553	010000000000010001	PTN	6	44	0.0069%	4	0	0	0	0	0	2	0