Bioinformatics course

Bioinformatics at the University of Oslo

Bioinformatics xxx: A course in bioinformatics for molecular biology (8.0 credit points)

The aim of the course is to introduce students to bioinformatics resources and tools for molecular biology research by having some of the best researchers in Norway to talk about their field in general and then present their own data. Students are encouraged to bring a lap-top; we will be set up for in-course demonstrations as well as practical lab excercises. The course is intended for biology students. No prior background in bioinformatics or computer science is required.

Please bookmark this page. All future changes or announcements for the 2009 course will be posted to this page.

Registration is not yet open.

Information: ian.donaldson@biotek.uio.no

Registration: ragni.indahl@biotek.uio.no

Dates and times

The course is provisionally set to occur in weeks 37 and 38 (September 7th and 14th).

Each day will consist of three time slots for lectures and/or practical labs between 9 AM and 4 PM.

Place

Forskningsparken

Mondays to Thursdays: Room 10

Fridays: Room 7

Exceptions: none so far

Lunch is on your own between 1:00 PM and 2:15 PM (except 15th and 22nd: 11:00 AM to 12:30). Please completely vacate the room during these lunch times.

Programme

Please note: The displayed programme is a preliminary schedule under development. Changes are possible.

Bioinformatics 2009

Time	Speaker	Contact	Details and suggested readings
Day 1 - Monday September 7
9.00-9.15	Ian Donaldson	ian.donaldson at biotek.uio.no	Introduction
9.15-11.00			Statistics I
11:15-13.00
14.15-16.00
Day 2 - Tuesday September 8
9.15-11.00			Statistics II
11:15-13.00
14.15-16.00
Day 3 -Wednesday September 9
9.15-11.00			Microarrays
11:15-13.00			Microarrays
14.15-16.00			Microarrays
Day 4 - Thursday September 10
9.15-11.00	Torbjørn Rognes	torognes at ifi.uio.no	Sequence alignments and BLASTing
11:15-13.00	Robert Lyle		High throughput sequencing
14.15-16.00	Geir K. Sandve		Motif scanning and discovery in DNA
Day 5 - Friday September 11
9.15-11.00	Dave W. Ussery		Comparative genomics
11:15-13.00	Multiple		Sequence lab
14.15-16.00	Multiple		Sequence lab
Day 6 - Monday September 14
9.15-11.00	Bjørn Dalhus		Structural biology review and PyMOL (TBC)
11:15-13.00	Jon K. Laerdahl		Structural bioinformatics tools, predictors, and 3D modeling (TBC)
14.15-16.00	Dalhus and Laerdahl		Structural tutorials and exercises (TBC)
Day 7 - Tuesday September 15
9.15-11.00	Ian Donaldson	ian.donaldson@biotek.uio.no	Working with gene lists and over-representation analysis
11:15-13.00	Ian Donaldson		Interaction, Complex and Pathway data resources
14.15-16.00	Antonio Mora, Sabry Razick, Paul Boddie		Interaction lab
Day 8 - Wednesday September 16
9.15-10.00	Erik Plahte	http://www.cigene.no/people.html	Modelling paradigms for gene regulatory networks
10.15-11.00	Arne Gjuvsland	http://www.cigene.no/people.html	Causally cohesive genotype-phenotype modelling - systems biology meets genetics
11.15-12.00	Jon Olav Vik	http://www.cigene.no/people.html	cGP map of the cardiomyocyte
12:15-13.00	Harald Martens	http://www.cigene.no/people.html	QTL analysis with biospectroscopy - on cows and milk
13:00-14.15	Lunch
14.15-15.00	Achim Kohler	http://www.cigene.no/people.html	A new phenotyping paradigm for yeast
15.15-16.00	Solve Sæbø		Multivariate analysis of yeast genetic data (Regner med at Lars er borte da.)
Day 9 - Thursday September 17
9.15-12.00	Other ideas: Student presentations, Programming (Python, Taverna, R), Machine learning, BioPortal, EMBNet, Genome browser, text mining and PubGene, SIMULA and modelling
Day 10 - Friday September 18
9.15-12.00	Open lab and study session
Day 11 - Monday September 21
9.15-13.15	Exam (4 hour written open book)