Statistics iRefIndex 5.0

Summary

• Total interactions : 871,172
• Total distinct interactions (based on RIGID): 357,156
• Total distinct proteins (based on ROGID) : 83,938

This page lists statistics for our internal version of iRefIndex that includes all of the data from sources used for the current build Sources_iRefIndex_4.0. This full build of the iRefIndex contains data that cannot be redistributed according to usage policies of the source databases (namely, from DIP, HPRD and MPact databases). Please contact ian.donaldson at biotek.uio.no if you would like to obtain a copy of the full iRefIndex build under an academic, collaborative agreement.

The data that are freely available at ftp://ftp.no.embnet.org/irefindex/data/current/ are a subset of the full build that we can freely redistribute according to the usage policies of the source databases. Please refer to http://irefindex.uio.no/wiki/Statistics_iRefIndex_free_4.0 for statistics that are applicable to this free dataset.

Interactions available from major taxonomies

Top 15 uncorrected taxonomy groups in iRefIndex (Taxonomy identifiers as they appear in original source)

NCBI taxonomy identifier	Name	Number of interactions
4932	Saccharomyces cerevisiae	115570
9606	Homo sapiens	103700
7227	Drosophila melanogaster	46240
40674	Mammalia	35023
197	Campylobacter jejuni	11998
6239	Caenorhabditis elegans	11793
284812	Schizosaccharomyces pombe 972h-	11556
10090	Mus musculus	9964
562	Escherichia coli	8512
3702	Arabidopsis thaliana	5348
160	Treponema pallidum	3646
83333	Escherichia coli K-12	3490
10116	Rattus norvegicus	3477
1142	Synechocystis	3057
36329	Plasmodium falciparum 3D7	2731

• for the full list :http://irefindex.uio.no/wikifiles//images/9/90/Interactions_by_taxonomy_beta5_full.pdf

Top 15 corrected taxonomy groups in iRefIndex (Taxonomy identifiers corrected using sequence database information)

4932	Saccharomyces cerevisiae	115562
9606	Homo sapiens	114618
7227	Drosophila melanogaster	46244
197	Campylobacter jejuni	11998
4896	Schizosaccharomyces pombe	11831
6239	Caenorhabditis elegans	11793
10090	Mus musculus	8569
83333	Escherichia coli K-12	7482
3702	Arabidopsis thaliana	5354
155864	Escherichia coli O157:H7 EDL933	4928
160	Treponema pallidum	3646
1148	Synechocystis sp. PCC 6803	3166
36329	Plasmodium falciparum 3D7	2731
10116	Rattus norvegicus	2650
85962	Helicobacter pylori 26695	1598

• for the full list corrected :http://irefindex.uio.no/wikifiles//images/4/4e/Interactions_by_taxonomy_beta5_full_cor.pdf

Interactions (Corresponds to Table 6 in PMID 18823568)

BIND	62896
BIOGRID	20564	164770
DIP	25930	29004	56430
HPRD	2947	2016	858	39966
INTACT	24400	26946	25008	8442	113877
MINT	22066	34683	30052	6563	45338	76602
MPACT	6938	8489	6793	0	6132	6426	13321
MPPI	385	27	41	304	89	71	0	826
OPHID	2226	1357	899	18063	7248	6396	0	183	47297
CORUM	116	18	29	403	122	66	0	9	158	1919
	BIND	BIOGRID	DIP	HPRD	INTACT	MINT	MPACT	MPPI	OPHID	CORUM
	(25793)	(111301)	(13496)	(16472)	(56805)	(15495)	(1132)	(235)	(26461)	(1398)