Bioscape Web Resources

The Bioscape Web resources provide the principal end-user interface to Bioscape as described in the "Using the Bioscape Web Application" document. Typically, a user will follow a specific workflow supported by a number of resources described in the application's "site map", found in the bsweb package (specifically in the __init__.py source file) in the bsweb distribution. The following table summarises the source code organisation:

Pages	Logic package/module	Database access package/module	Templates
home (search), index (advanced search)	bsweb.pages	bsweb.pages.collections	home_template.xhtml, index_template.xhtml
gene disambiguation, gene summary	bsweb.genes	bsweb.genes.collections	gene_disambiguation_template.xhtml gene_summary_template.xhtml
gene and evidence mention summaries	bsweb.documents	bsweb.documents.viewers	text_mentions_template.xhtml text_evidence_mentions_template.xhtml
document lists	bsweb.documents	bsweb.documents.collections	text_index_generation_documents_template.xhtml text_search_generation_documents_template.xhtml text_results_generation_documents_template.xhtml text_evidence_generation_documents_template.xhtml
annotated documents	bsweb.documents	bsweb.documents.viewers	text_index_generation_document_template.xhtml text_search_generation_document_template.xhtml text_results_generation_document_template.xhtml text_evidence_generation_document_template.xhtml
mention scoring summaries	bsweb.documents	bsweb.documents.collections	text_scored_bioentity_template.xhtml text_scored_bioentities_template.xhtml

To summarise, page functionality typically resides in the top-level of a package, database queries providing lists of results reside in collections modules, and the special database/text index combination supporting annotated documents resides in the viewers module in the bsweb.documents package.