Introductory Perl

This introduction to Perl is taught as part of MBV-INF4410/9410.

http://bioinformatics.uio.no/wiki/Bioinformatics_course

Slides for the "Introduction to Perl" lectures:

• File:Lecture 1 - What Perl can do.ppt
• File:Lecture 2 - More What (Bio)Perl can do.ppt
• Perl_example_code

DOS Commands

You will need to know how to make your way around in a DOS command environment. Useful sites that may be useful to read before/during the exercises are:

• List of DOS commands

Especially these:

dir	Shows the contents of the current directory (folder)
mkdir name	Makes a new directory called name
cd name	Enters the directory called name
cd ..	Goes up and out of the current directory
copy source target	Makes a copy of source with the name target, or makes a copy of source with the same name inside a directory called target (if present)
move source target	Moves source inside a directory called target (if present)
rename oldname newname	Renames oldname to newname
del name	Deletes the file called name (be careful!)
cls	Clears the console/terminal
echo %PATH%	Shows the list of places where the system looks for programs
Ctrl+C (holding down Ctrl and C)	Terminate a program - useful if you have accidentally programmed an infinite loop that you want to stop

Unix Commands

If you are using GNU/Linux or Mac OS X, you will be using different commands:

ls	Shows the contents of the current directory (folder)
mkdir name	Makes a new directory called name
cd name	Enters the directory called name
cd ..	Goes up and out of the current directory
cd	Goes to your home directory
cp source target	Makes a copy of source with the name target, or makes a copy of source with the same name inside a directory called target (if present)
mv source target	Renames source to target, or moves source inside a directory called target (if present)
rm name	Deletes the file called name (be careful!)
clear	Clears the console/terminal
echo $PATH	Shows the list of places where the system looks for programs
Ctrl+C (holding down Ctrl and C)	Terminate a program - useful if you have accidentally programmed an infinite loop that you want to stop