Sources iRefIndex 10.0
From irefindex
Last edited: 2013-03-14
Applies to iRefIndex release: 10.0
Release date: 2013-03-02
Authors: Paul Boddie and Ian Donaldson
Database: iRefIndex (http://irefindex.org)
Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.
Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.
- For statistics on the full dataset please refer to: http://irefindex.org/wiki/index.php?title=Statistics_iRefIndex_10.0
Interaction data sources BIND DATE 2005-05-25 BIND RELEASE_URL http://bond.unleashedinformatics.com/downloads/data/BIND/data/bindflatfiles/bindindex/ BIND DOWNLOAD_FILES 20060525*.txt BIND_TRANSLATION DATE 2010-12-15 15:54:01 BIND_TRANSLATION RELEASE_URL http://download.baderlab.org/BINDTranslation/release1_0/ BIND_TRANSLATION DOWNLOAD_FILES BINDTranslation_v1_xml_AllSpecies.tar.gz BIOGRID DATE 2012-08-31 19:24:08 BIOGRID RELEASE_URL http://thebiogrid.org/downloads/archives/Release%20Archive/BIOGRID-3.1.92/ BIOGRID DOWNLOAD_FILES BIOGRID-ALL-3.1.92.psi25.zip CORUM DATE 2009-12-02 18:24:15 CORUM RELEASE_URL http://mips.gsf.de/genre/export/sites/default/corum/ CORUM DOWNLOAD_FILES allComplexes.psimi.zip DIP DOWNLOAD ftp://dip.doe-mbi.ucla.edu/2012/mif25/dip20120818.mif25.gz DIP FILENAME dip20120818.mif25 DIP DATE 08/18/2012 DIP RELEASE_URL http://dip.doe-mbi.ucla.edu/dip/Download.cgi?SM=3 HPRD FILENAME HPRD_PSIMI_041310.tar.gz HPRD VERSION Release 9 HPRD DATE 04-13-10 HPRD RELEASE_URL http://www.hprd.org/RELEASE9/ HPRD DOWNLOAD_FILES HPRD_PSIMI_041310.tar.gz INTACT DATE 2012-12-14 20:04:00 INTACT RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psi25/ INTACT DOWNLOAD_FILES pmidMIF25.zip MATRIXDB DATE 2012-08-03 11:26:01 MATRIXDB RELEASE_URL http://matrixdb.ibcp.fr/cgi-bin/download%3C../../ MATRIXDB DOWNLOAD_FILES MatrixDB_20120801.xml.zip MINT DATE 2011-12-04 23:00:00 MINT RELEASE_URL ftp://mint.bio.uniroma2.it/pub/release/psi/current/psi25/pmids/ MINT DOWNLOAD_FILES *.psi25.zip MPACT DATE 2008-09-30 22:00:00 MPACT RELEASE_URL ftp://ftpmips.gsf.de/yeast/PPI/ MPACT DOWNLOAD_FILES mpact-complete.psi25.xml.gz MPPI DATE 2004-06-01 15:37:37 MPPI RELEASE_URL http://mips.gsf.de/proj/ppi/data/ MPPI DOWNLOAD_FILES mppi.gz OPHID DATE 2013-01-14 10:33:18 OPHID RELEASE_URL local archive of last release OPHID DOWNLOAD_FILES ophid*.xml INNATEDB DATE 2013-01-13 14:14:49 INNATEDB RELEASE_URL http://www.innatedb.com/download/interactions/ INNATEDB DOWNLOAD_FILES innatedb_all.mitab.gz MPIDB DATE 2013-01-14 04:24:36 MPIDB RELEASE_URL http://www.jcvi.org/mpidb/download.php?dbsource= MPIDB DOWNLOAD_FILES MPI-IMEX MPI-LIT Other data sources PSI_MI DATE 2013-01-14 04:24:42 PSI_MI RELEASE_URL http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/mi/rel25/data/ PSI_MI DOWNLOAD_FILES psi-mi25.obo TAXONOMY DATE 2013-01-14 03:20:00 TAXONOMY RELEASE_URL ftp://ftp.ncbi.nih.gov/pub/taxonomy/ TAXONOMY DOWNLOAD_FILES taxdump.tar.gz DIG DATE 2013-01-14 10:34:17 DIG RELEASE_URL file:///storage/localdata/DIG/ DIG DOWNLOAD_FILES morbidmap14062010.txt FLY VERSION 2013_01 FLY DATE 09-Jan-2013 FLY RELEASE_URL http://www.uniprot.org/docs/ FLY DOWNLOAD_FILES fly.txt GENE DATE 2013-01-13 04:10:00 GENE RELEASE_URL ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ GENE DOWNLOAD_FILES gene2refseq.gz gene_info.gz gene2go.gz gene_history.gz IPI DATE 2012-07-20 15:07:00 IPI RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/IPI/current/ IPI DOWNLOAD_FILES *.fasta.gz MMDB DATE 2013-01-10 14:03:00 MMDB RELEASE_URL ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ MMDB DOWNLOAD_FILES table PDB DATE 2013-01-13 20:45:00 PDB RELEASE_URL ftp://ftp.ncbi.nih.gov/blast/db/FASTA/ PDB DOWNLOAD_FILES pdbaa.gz REFSEQ DATE 2012-11-09 22:31:00 REFSEQ RELEASE_URL ftp://ftp.ncbi.nih.gov/refseq/release//complete/ REFSEQ DOWNLOAD_FILES complete*.protein.gpff.gz UNIPROT VERSION 2013_01 UNIPROT DATE 09-Jan-2013 UNIPROT RELEASE_URL ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/ UNIPROT DOWNLOAD_FILES uniprot_sprot.dat.gz uniprot_trembl.dat.gz uniprot_sprot_varsplic.fasta.gz reldate.txt YEAST VERSION 2013_01 YEAST DATE 09-Jan-2013 YEAST RELEASE_URL http://www.uniprot.org/docs/ YEAST DOWNLOAD_FILES yeast.txt
All iRefIndex Pages
Follow this link for a listing of all iRefIndex related pages (archived and current).
