Sources iRefIndex 14.0
From irefindex
Revision as of 10:45, 21 April 2015 by Ian.donaldson (talk | contribs)
Last edited: 2015-04-21
Applies to iRefIndex release: 14.0
Release date: 07-04-2013
Authors: Ian Donaldson
Database: iRefIndex (http://irefindex.org)
Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.
Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.
- For statistics on the full dataset please refer to: http://irefindex.org/wiki/index.php?title=Statistics_iRefIndex_14.0
'''Interaction data sets''' BIND DATE 2005-05-25 BIND RELEASE_URL http://bond.unleashedinformatics.com/downloads/data/BIND/data/bindflatfiles/bindindex/ BIND DOWNLOAD_FILES 20060525*.txt BIOGRID DATE 2015-02-28 20:41:14 BIOGRID RELEASE_URL http://thebiogrid.org/downloads/archives/Release%20Archive/BIOGRID-3.3.122/ BIOGRID DOWNLOAD_FILES BIOGRID-ALL-3.3.122.psi25.zip CORUM DATE 2009-12-02 18:24:15 CORUM RELEASE_URL http://mips.gsf.de/genre/export/sites/default/corum/ CORUM DOWNLOAD_FILES allComplexes.psimi.zip DIP DOWNLOAD ftp://sabry:z6RHVXe7@dip.doe-mbi.ucla.edu/2015/mif25/dip20150101.mif25.gz DIP FILENAME dip20150101.mif25 DIP DATE 01/01/2015 DIP RELEASE_URL http://dip.doe-mbi.ucla.edu/dip/Download.cgi?SM=3 HPRD RELEASE_URL http://hprd.org HPRD DOWNLOAD_FILES HPRD_PSIMI_041310.tar.gz I2D_IMEX RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/i2d/webservices/current/search/query/*?format=tab27 I2D_IMEX DOWNLOAD_FILES i2dimex_psicquic.txt INNATEDB DATE 2015-03-08 22:46:08 INNATEDB RELEASE_URL http://www.innatedb.com/download/interactions/ INNATEDB DOWNLOAD_FILES innatedb_ppi.mitab.gz INTACT DATE 2015-02-24 19:48:00 INTACT RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psi25/ INTACT DOWNLOAD_FILES pmidMIF25.zip INTCOMPLEX DATE 2015-02-24 19:49:00 INTCOMPLEX RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/intact/complex/current/psi25/ INTCOMPLEX DOWNLOAD_FILES complexesMIF25.zip MATRIXDB DATE 2015-03-16 13:04:00 MATRIXDB RELEASE_URL http://matrixdb.ibcp.fr:8080/psicquic/webservices/current/search/query/*?format=tab27 MATRIXDB DOWNLOAD_FILES matrixdb_psicquic.txt MPACT DATE 2008-09-30 22:00:00 MPACT RELEASE_URL local copy MPACT DOWNLOAD_FILES mpact-complete.psi25.xml.gz MPPI DATE 2004-06-01 15:37:37 MPPI RELEASE_URL local copy MPPI DOWNLOAD_FILES mppi.gz MPIDB DATE 2015-03-16 11:56:28 MPIDB RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/mpidb/webservices/current/search/query/*?format=tab27 MPIDB DOWNLOAD_FILES mpidb_psicquic.txt REACTOME DATE 2015-03-13 20:11:32 REACTOME RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/reactome/webservices/current/search/query/* REACTOME DOWNLOAD_FILES reactome_psicquic.txt SPIKE DATE 2015-03-13 10:08:02 SPIKE RELEASE_URL http://spike.cs.tau.ac.il/psicquic-ws/webservices/current/search/query/* SPIKE DOWNLOAD_FILES spike_psicquic.txt VIRUSHOST DATE 2015-03-13 10:08:08 VIRUSHOST RELEASE_URL http://virhostnet.prabi.fr:9090/psicquic/webservices/current/search/query/* VIRUSHOST DOWNLOAD_FILES virushost_psicquic.txt UNIPROTPP DATE 2015-03-16 12:21:57 UNIPROTPP RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/uniprot/webservices/current/search/query/*?format=tab27 UNIPROTPP DOWNLOAD_FILES uniprotpp_psicquic.txt HPIDB DATE 2015-03-14 01:19:30 HPIDB RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/hpidb/webservices/current/search/query/*?format=tab27 HPIDB DOWNLOAD_FILES hpidb_psicquic.txt BHF_UCL RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/bhf-ucl/webservices/current/search/query/*?format=tab27 BHF_UCL DOWNLOAD_FILES bhfucl_psicquic.txt MBINFO DATE 2015-03-14 01:19:31 MBINFO RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/mbinfo/webservices/current/search/query/*?format=tab27 MBINFO DOWNLOAD_FILES mbinfo_psicquic.txt MOLCON DATE 2015-03-16 12:36:21 MOLCON RELEASE_URL http://www.ebi.ac.uk/Tools/webservices/psicquic/molcon/webservices/current/search/query/*?format=tab27 MOLCON DOWNLOAD_FILES molcon_psicquic.txt '''Supporting data sets''' PSI_MI DATE 2015-03-13 10:08:11 PSI_MI RELEASE_URL http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/mi/rel25/data/ PSI_MI DOWNLOAD_FILES psi-mi25.obo TAXONOMY DATE 2015-03-13 08:20:00 TAXONOMY RELEASE_URL ftp://ftp.ncbi.nih.gov/pub/taxonomy/ TAXONOMY DOWNLOAD_FILES taxdump.tar.gz DIG DATE 2015-03-13 10:08:25 DIG RELEASE_URL file:///storage/localdata/dig/ DIG DOWNLOAD_FILES morbidmap14062010.txt FLY VERSION 2015_03 FLY DATE 04-Mar-2015 FLY RELEASE_URL http://www.uniprot.org/docs/ FLY DOWNLOAD_FILES fly.txt GENE RELEASE_URL ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ GENE DOWNLOAD_FILES gene2refseq.gz gene_info.gz gene2go.gz gene_history.gz IPI DATE 2015-03-13 10:13:26 IPI RELEASE_URL file:///storage/localdata/ipi/ IPI DOWNLOAD_FILES *.fasta.gz MMDB DATE 2014-05-28 22:00:00 MMDB RELEASE_URL ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ MMDB DOWNLOAD_FILES table PDB DATE 2015-03-11 03:00:00 PDB RELEASE_URL ftp://ftp.ncbi.nih.gov/blast/db/FASTA/ PDB DOWNLOAD_FILES pdbaa.gz REFSEQ DATE 2015-01-05 22:08:00 REFSEQ RELEASE_URL ftp://ftp.ncbi.nih.gov/refseq/release//complete/ REFSEQ DOWNLOAD_FILES complete*.protein.gpff.gz UNIPROT VERSION 2015_03 UNIPROT DATE 04-Mar-2015 UNIPROT RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/complete/ UNIPROT DOWNLOAD_FILES uniprot_sprot.dat.gz uniprot_trembl.dat.gz uniprot_sprot_varsplic.fasta.gz reldate.txt YEAST VERSION 2015_03 YEAST DATE 04-Mar-2015 YEAST RELEASE_URL http://www.uniprot.org/docs/ YEAST DOWNLOAD_FILES yeast.txt
All iRefIndex Pages
Follow this link for a listing of all iRefIndex related pages (archived and current).
