Donaldson Research

From irefindex

About Donaldson Research

I am a bioinformatician based in Oslo, Norway. A number of open source projects developed in my group at the University of Oslo will continue to be supported and developed on this site.

If you are interested in collaborative projects or consulting services involving these resources, please contact me at the address below.

Ian Donaldson

Projects being maintained by Donaldson Research

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iRefIndex, iRefWeb, iRefScape, iRefR
iRefIndex (interaction Reference Index) provides an index of protein interactions available in a number of primary interaction databases including BIND, BioGRID, CORUM, DIP, HPRD, IntAct, MINT, MPact, MPPI and OPHID. This index allows the user to search for a protein and retrieve a non-redundant list of interactors for that protein.

iRefIndex is available via a number of interfaces: in MITAB tab-delimited text (iRefIndex), web-site (iRefWeb), Cytoscape plugin (iRefScape) and an R package (iRefR).

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DiG: Disease Groups

The Disease Groups project groups together phenotypically related disease-gene associations found in OMIM's Morbid Map. The resulting map of disease genes may be used to explore relationships between disease genes in the human protein-interactome.

Past Projects

Access to past projects including Magrathea, BioScape and past courses in Bioinformatics can be found on the old Donaldson Group page.