Difference between revisions of "Mapping of terms to MI term ids - iRefIndex 6.0"

From irefindex
(New page: In those cases where an interaction data record lists a term where a controlled vocabulary term is expected, and no controlled vocabulary term identifier is found, the term found in the re...)
 
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Additional details are available at http://www.ebi.ac.uk/ontology-lookup/  
 
Additional details are available at http://www.ebi.ac.uk/ontology-lookup/  
  
 +
These corrections are included in the iRefIndex MITAB files and they are used by the iRefWeb interface.
  
 
==Interaction Type Terms==
 
==Interaction Type Terms==
Line 114: Line 115:
 
|-
 
|-
 
| amidation reaction||MI:0193||amidation reaction||Correct term.  MI term id was simply missing
 
| amidation reaction||MI:0193||amidation reaction||Correct term.  MI term id was simply missing
 +
|-
 +
|
 +
|}
 +
 +
 +
 +
==Interaction Detection Method Terms==
 +
{| {{table}}
 +
| align="center" style="background:#f0f0f0;"|'''term found in record'''
 +
| align="center" style="background:#f0f0f0;"|'''curator-assigned term id'''
 +
| align="center" style="background:#f0f0f0;"|'''assigned term'''
 +
| align="center" style="background:#f0f0f0;"|'''notes'''
 +
|-
 +
| interaction detection method||MI:0001||interaction detection method||correct term, MI term id was missing
 +
|-
 +
| Affinity Capture-Luminescence||MI:0004||affinity chromatography technology||biogrids mapping
 +
|-
 +
| Affinity Capture-MS||MI:0004||affinity chromatography technology||biogrids mapping
 +
|-
 +
| Affinity Capture-RNA||MI:0004||affinity chromatography technology||biogrids mapping
 +
|-
 +
| Affinity Capture-Western||MI:0004||affinity chromatography technology||biogrids mapping
 +
|-
 +
| Affinity purification||MI:0004||affinity chromatography technology||alternate label for this term was listed with no MI term id
 +
|-
 +
| LRET||MI:0012||bioluminescence resonance energy transfer||alternate label for this term was listed with no MI term id
 +
|-
 +
| bacterial two-hybrid||MI:0014||adenylate cyclase complementation||alternate label for this term was listed with no MI term id
 +
|-
 +
| two-hybrid-test||MI:0018||two hybrid||variation on preferred term was listed with no MI term id
 +
|-
 +
| Gal4 transcription regeneration||MI:0018||two hybrid||alternate label for this term was listed with no MI term id
 +
|-
 +
| immunoprecipitation||MI:0019||coimmunoprecipitation||alternate label for this term was listed with no MI term id
 +
|-
 +
| Co-IP||MI:0019||coimmunoprecipitation||alternate label for this term was listed with no MI term id
 +
|-
 +
| cosedimentation through density gradients||MI:0029||cosedimentation through density gradient||correct term, MI term id was missing
 +
|-
 +
| cross-linking studies||MI:0030||cross-linking study||variation on preferred term was listed with no MI term id
 +
|-
 +
| cross-linking||MI:0030||cross-linking study||variation on preferred term was listed with no MI term id
 +
|-
 +
| Label transfer techniques||MI:0031||protein cross-linking with a bifunctional reagent||alternate label for this term was listed with no MI term id
 +
|-
 +
| Photoaffinity labelling||MI:0031||protein cross-linking with a bifunctional reagent||alternate label for this term was listed with no MI term id
 +
|-
 +
| Electron cryomicroscopy||MI:0040||electron microscopy||alternate label for this term was listed with no MI term id
 +
|-
 +
| Electron crystallography||MI:0040||electron microscopy||alternate label for this term was listed with no MI term id
 +
|-
 +
| GTPase||MI:0419||gtpase assay||variation on preferred term was listed with no MI term id
 +
|-
 +
| Affinity blotting||MI:0047||far western blotting||alternate label for this term was listed with no MI term id
 +
|-
 +
| Far Western||MI:0047||far western blotting||variation on preferred term was listed with no MI term id
 +
|-
 +
| far-western||MI:0047||far western blotting||variation on preferred term was listed with no MI term id
 +
|-
 +
| Filter overlay assay||MI:0049||filter binding||alternate label for this term was listed with no MI term id
 +
|-
 +
| fluorescence technologies||MI:0051||fluorescence technology||variation on preferred term was listed with no MI term id
 +
|-
 +
| fluorescence-anisotropy||MI:0053||fluorescence polarization spectroscopy||variation on preferred term was listed with no MI term id
 +
|-
 +
| FRET analysis||MI:0055||fluorescent resonance energy transfer||alternate label for this term was listed with no MI term id
 +
|-
 +
| resonance-energy-transfer||MI:0055||fluorescent resonance energy transfer||variation on preferred term was listed with no MI term id
 +
|-
 +
| RET||MI:0055||fluorescent resonance energy transfer||alternate label for this term was listed with no MI term id
 +
|-
 +
| in silico methods||MI:0063||interaction prediction||alternate label for this term was listed with no MI term id
 +
|-
 +
| mass-spectrometry||MI:0069||mass spectrometry studies of complexes||listed term was a partial match to this term, no MI term id was given - individual cases should be reviewed
 +
|-
 +
| Size Exclusion Chromatography||MI:0071||molecular sieving||alternate label for this term was listed with no MI term id
 +
|-
 +
| Siezing column||MI:0071||molecular sieving||alternate label for this term was listed with no MI term id
 +
|-
 +
| PCA||MI:0090||protein complementation assay||alternate label for this term was listed with no MI term id
 +
|-
 +
| chromatography technologies||MI:0091||chromatography technology||variation on preferred term was listed with no MI term id
 +
|-
 +
| column chromatography||MI:0091||chromatography technology||alternate label for this term was listed with no MI term id
 +
|-
 +
| Reconstituted Complex||MI:0096||pull down||biogrids mapping
 +
|-
 +
| RIA Radio Immuno Assay||MI:0099||scintillation proximity assay||alternate label for this term was listed with no MI term id
 +
|-
 +
| BIAcore[r]||MI:0107||surface plasmon resonance||alternate label for this term was listed with no MI term id
 +
|-
 +
| Optical biosensor||MI:0107||surface plasmon resonance||alternate label for this term was listed with no MI term id
 +
|-
 +
| immunoblotting||MI:0113||western blot||immunoblotting might be used as a method of interaction detection though it is usually a method for participant identification - cases should be reviewed individually
 +
|-
 +
| three-dimensional-structure||MI:0114||x-ray crystallography||though other methods might be used to define three dimensional structure, this seems to be the closest match
 +
|-
 +
| Dosage Growth Defect||MI:0254||genetic interference||biogrid\'s mapping
 +
|-
 +
| Dosage Lethality||MI:0254||genetic interference||biogrid\'s mapping
 +
|-
 +
| Dosage Rescue||MI:0254||genetic interference||biogrid\'s mapping
 +
|-
 +
| Phenotypic Enhancement||MI:0254||genetic interference||biogrid\'s mapping
 +
|-
 +
| Phenotypic Suppression||MI:0254||genetic interference||biogrid\'s mapping
 +
|-
 +
| Synthetic Growth Defect||MI:0254||genetic interference||biogrid\'s mapping
 +
|-
 +
| Synthetic Lethality||MI:0254||genetic interference||biogrid\'s mapping
 +
|-
 +
| Synthetic Rescue||MI:0254||genetic interference||biogrid\'s mapping
 +
|-
 +
| modeled by author||MI:0363||inferred by author||alternate label for this term was listed with no MI term id
 +
|-
 +
| modelled by author||MI:0363||inferred by author||alternate label for this term was listed with no MI term id
 +
|-
 +
| modeled by curator||MI:0364||inferred by curator||alternate label for this term was listed with no MI term id
 +
|-
 +
| modelled by curator||MI:0364||inferred by curator||alternate label for this term was listed with no MI term id
 +
|-
 +
| affinity technologies||MI:0400||affinity technology||variation on preferred term was listed with no MI term id
 +
|-
 +
| Co-fractionation||MI:0401||biochemical||biogrids mapping
 +
|-
 +
| Co-purification||MI:0401||biochemical||biogrids mapping
 +
|-
 +
| colocalization by immunostaining||MI:0022||colocalization by immunostaining||correct term, MI term id was missing
 +
|-
 +
| elisa: enzyme-linked immunosorbent assay||MI:0411||enzyme linked immunosorbent assay||variation on preferred term was listed with no MI term id
 +
|-
 +
| Gel retardation assay||MI:0413||electrophoretic mobility shift assay||alternate label for this term was listed with no MI term id
 +
|-
 +
| band shift||MI:0413||electrophoretic mobility shift assay||alternate label for this term was listed with no MI term id
 +
|-
 +
| gel-retardation-assays||MI:0413||electrophoretic mobility shift assay||variation on preferred term was listed with no MI term id
 +
|-
 +
| microscopy||MI:0428||imaging technique||alternate label for this term was listed with no MI term id
 +
|-
 +
| colocalization by fluorescent probes cloning||MI:0021||colocalization by fluorescent probes cloning||correct term, MI term id was missing
 +
|-
 +
| yeast one-hybrid||MI:0432||one hybrid||alternate label for this term was listed with no MI term id
 +
|-
 +
| bridge assay||MI:0437||protein tri hybrid||alternate label for this term was listed with no MI term id
 +
|-
 +
| trihybrid||MI:0437||protein tri hybrid||alternate label for this term was listed with no MI term id
 +
|-
 +
| Synthetic Haploinsufficiency||MI:0254||genetic interference||biogrid\'s mapping
 +
|-
 +
| homogeneous time-resolved fluo||MI:0510||homogeneous time resolved fluorescence||variation on preferred term was listed with no MI term id
 +
|-
 +
| in vitro evolution of nucleic acids||MI:0657||systematic evolution of ligands by exponential enrichment||alternate label for this term was listed with no MI term id
 +
|-
 +
| tap tag coimmunoprecipitation||MI:0676||tandem affinity purification||variation on preferred term was listed with no MI term id
 +
|-
 +
| antigen capture assay||MI:0678||antibody array||alternate label for this term was listed with no MI term id
 +
|-
 +
| interaction-adhesion-assay||MI:0686||unspecified method||cant find a resonable match to this term
 +
|-
 +
| Invivo||MI:0686||unspecified method||this is an obsolete term that is undefined so it is being mapped to \"unspecified method\"
 +
|-
 +
| Protein-RNA||MI:0686||unspecified method||biogrid\'s mapping
 +
|-
 +
| transient-coexpression||MI:0686||unspecified method||cant find a resonable match to this term
 +
|-
 +
| in vivo||MI:0686||unspecified method||this is an obsolete term that is undefined so it is being mapped to \"unspecified method\"
 +
|-
 +
| NA||MI:0686||unspecified method||cant find a resonable match to this term
 +
|-
 +
| Protein-peptide||MI:0686||unspecified method||biogrid\'s mapping
 +
|-
 +
| monoclonal-antibody-blockade||MI:0686||unspecified method||cant find a resonable match to this term
 +
|-
 +
| in vitro||MI:0686||unspecified method||this is an obsolete term that is undefined so it is being mapped to \"unspecified method\"
 +
|-
 +
| IEC||MI:0686||unspecified method||cant find a resonable match to this term
 +
|-
 +
| KISS||MI:0728||gal4 vp16 complementation||alternate label for this term was listed with no MI term id
 +
|-
 +
| mammalian two hybrid||MI:0728||gal4 vp16 complementation||alternate label for this term was listed with no MI term id
 +
|-
 +
| karyoplasmic interaction ion strategy||MI:0728||gal4 vp16 complementation||alternate label for this term was listed with no MI term id
 +
|-
 +
| autoradiography||MI:0833||autoradiography||this term does have a MI term id although it is difficuly to see that it would be a legitamate interaction detection method - cases should be reviewed individually
 +
|-
 +
| surface-plasmon-resonance-chip||MI:0921||surface plasmon resonance array||variation on a preferred term was listed with no MI term id (chip = array?)
 +
|-
 +
| deuterium-hydrogen-exchange||MI:0944||mass spectrometry study of hydrogen/deuterium exchange||mass spectrometry study of hydrogen/deuterium exchange
 +
|-
 +
| affinity chromatography technologies||MI:0004||affinity chromatography technology||variation on preferred term was listed with no MI term id
 +
|-
 +
| affinity chromatography technology||MI:0004||affinity chromatography technology||correct term, MI term id was missing
 +
|-
 +
| affinity-chromatography||MI:0004||affinity chromatography technology||variation on preferred term was listed with no MI term id
 +
|-
 +
| anti bait coimmunoprecipitation||MI:0006||anti bait coimmunoprecipitation||no cv term id given - auto-mapping ok
 +
|-
 +
| anti tag coimmunoprecipitation||MI:0007||anti tag coimmunoprecipitation||no cv term id given - auto-mapping ok
 +
|-
 +
| beta galactosidase complementation||MI:0010||beta galactosidase complementation||no cv term id given - auto-mapping ok
 +
|-
 +
| beta lactamase complementation||MI:0011||beta lactamase complementation||no cv term id given - auto-mapping ok
 +
|-
 +
| bioluminescence resonance energy transfer||MI:0012||bioluminescence resonance energy transfer||no cv term id given - auto-mapping ok
 +
|-
 +
| adenylate cyclase complementation||MI:0014||adenylate cyclase complementation||no cv term id given - auto-mapping ok
 +
|-
 +
| circular dichroism||MI:0016||circular dichroism||no cv term id given - auto-mapping ok
 +
|-
 +
| classical fluorescence spectroscopy||MI:0017||classical fluorescence spectroscopy||no cv term id given - auto-mapping ok
 +
|-
 +
| 2-hybrid||MI:0018||two hybrid||no cv term id given - auto-mapping ok
 +
|-
 +
| classical two hybrid||MI:0018||two hybrid||no cv term id given - auto-mapping ok
 +
|-
 +
| Two-hybrid||MI:0018||two hybrid||no cv term id given - mapping ok - used biogrids mapping
 +
|-
 +
| yeast two hybrid||MI:0018||two hybrid||no cv term id given - auto-mapping ok
 +
|-
 +
| co-immunoprecipitation||MI:0019||coimmunoprecipitation||no cv term id given - auto-mapping ok
 +
|-
 +
| coimmunoprecipitation||MI:0019||coimmunoprecipitation||no cv term id given - auto-mapping ok
 +
|-
 +
| coip: coimmunoprecipitation||MI:0019||coimmunoprecipitation||no cv term id given - auto-mapping ok
 +
|-
 +
| transmission electron microscopy||MI:0020||transmission electron microscopy||no cv term id given - auto-mapping ok
 +
|-
 +
| cosedimentation in solution||MI:0028||cosedimentation in solution||no cv term id given - auto-mapping ok
 +
|-
 +
| cosedimentation through density gradient||MI:0029||cosedimentation through density gradient||no cv term id given - auto-mapping ok
 +
|-
 +
| sucrose-gradient-sedimentation||MI:0029||density sedimentatio||no cv term id given - auto-mapping ok
 +
|-
 +
| cross-linking study||MI:0030||cross-linking study||no cv term id given - auto-mapping ok
 +
|-
 +
| protein cross-linking with a bifunctional reagent||MI:0031||protein cross-linking with a bifunctional reagent||no cv term id given - auto-mapping ok
 +
|-
 +
| dynamic light scattering||MI:0038||dynamic light scattering||no cv term id given - auto-mapping ok
 +
|-
 +
| electron-microscopy||MI:0040||electron microscopy||no cv term id given - auto-mapping ok
 +
|-
 +
| electron paramagnetic resonance||MI:0042||electron paramagnetic resonance||no cv term id given - auto-mapping ok
 +
|-
 +
| ESR||MI:0042||electron paramagnetic resonance||no cv term id given - auto-mapping ok
 +
|-
 +
| electron resonance||MI:0043||electron resonance||no cv term id given - auto-mapping ok
 +
|-
 +
| electron-spin-resonance||MI:0043||electron resonance||no cv term id given - auto-mapping ok
 +
|-
 +
| experimental interaction detection||MI:0045||experimental interaction detection||no cv term id given - auto-mapping ok
 +
|-
 +
| experimental knowledge based||MI:0046||experimental info||no cv term id given - auto-mapping ok - this is the preferred term for this
 +
|-
 +
| filamentous phage display||MI:0048||filamentous phage display||no cv term id given - auto-mapping ok
 +
|-
 +
| fluorescence technology||MI:0051||fluorescence technology||no cv term id given - auto-mapping ok
 +
|-
 +
| fluorescence correlation spectroscopy||MI:0052||fluorescence correlation spectroscopy||no cv term id given - auto-mapping ok
 +
|-
 +
| Fluorescence anisotropy||MI:0053||fluorescence polarization spectroscopy||no cv term id given - auto-mapping ok
 +
|-
 +
| fluorescence polarization spectroscopy||MI:0053||fluorescence polarization spectroscopy||no cv term id given - auto-mapping ok
 +
|-
 +
| Flow cytometry||MI:0054||fluorescence-activated cell sorting||no cv term id given - auto-mapping ok
 +
|-
 +
| fluorescence-activated cell sorting||MI:0054||fluorescence-activated cell sorting||no cv term id given - auto-mapping ok
 +
|-
 +
| fluorescent resonance energy transfer||MI:0055||fluorescent resonance energy transfer||no cv term id given - auto-mapping ok
 +
|-
 +
| interaction prediction||MI:0063||interaction prediction||no cv term id given - auto-mapping ok
 +
|-
 +
| isothermal titration calorimetry||MI:0065||isothermal titration calorimetry||no cv term id given - auto-mapping ok
 +
|-
 +
| lambda phage display||MI:0066||lambda phage display||no cv term id given - auto-mapping ok
 +
|-
 +
| light-scattering||MI:0067||light scattering||no cv term id given - auto-mapping ok
 +
|-
 +
| mass spectrometry studies of complexes||MI:0069||mass spectrometry studies of complexes||no cv term id given - auto-mapping ok
 +
|-
 +
| equilibrium-dialysis||MI:0071||molecular sieving||no cv term id given - manual-mapping ok - individual cases should be reviewed
 +
|-
 +
| Gel Filtration||MI:0071||molecular sieving||no cv term id given - manual-mapping ok - individual cases should be reviewed
 +
|-
 +
| gel-filtration-chromatography||MI:0071||molecular sieving||no cv term id given - manual-mapping ok - individual cases should be reviewed
 +
|-
 +
| membrane-filtration||MI:0071||molecular sieving||no cv term id given - manual-mapping ok - individual cases should be reviewed
 +
|-
 +
| nuclear magnetic resonance||MI:0077||nuclear magnetic resonance||no cv term id given - auto-mapping ok
 +
|-
 +
| hybridization||MI:0079||other biochemic tech||no cv term id given - auto-mapping ok - individual cases should be reviewed
 +
|-
 +
| phage-display||MI:0084||phage display||no cv term id given - auto-mapping ok
 +
|-
 +
| protein complementation assay||MI:0090||protein complementation assay||no cv term id given - auto-mapping ok
 +
|-
 +
| chromatography technology||MI:0091||chromatography technology||no cv term id given - auto-mapping ok
 +
|-
 +
| reverse ras recruitment system||MI:0097||reverse ras recruitment system||no cv term id given - auto-mapping ok
 +
|-
 +
| scintillation proximity assay||MI:0099||scintillation proximity assay||no cv term id given - auto-mapping ok
 +
|-
 +
| static light scattering||MI:0104||static light scattering||no cv term id given - auto-mapping ok
 +
|-
 +
| surface plasmon resonance||MI:0107||surface plasmon resonance||no cv term id given - auto-mapping ok
 +
|-
 +
| t7 phage display||MI:0108||t7 phage display||no cv term id given - auto-mapping ok
 +
|-
 +
| dihydrofolate reductase reconstruction||MI:0111||dihydrofolate reductase reconstruction||no cv term id given - auto-mapping ok
 +
|-
 +
| ubiquitin reconstruction||MI:0112||ubiquitin reconstruction||no cv term id given - auto-mapping ok
 +
|-
 +
| Co-crystal Structure||MI:0114||x-ray||no cv term id given - manual-mapping ok - using biogrid\'s mapping
 +
|-
 +
| x-ray crystallography||MI:0114||x-ray crystallography||no cv term id given - auto-mapping ok
 +
|-
 +
| x-ray: x-ray crystallography||MI:0114||x-ray crystallography||no cv term id given - auto-mapping ok
 +
|-
 +
| ion exchange chromatography||MI:0226||ion exchange chromatography||no cv term id given - auto-mapping ok
 +
|-
 +
| reverse phase chromatography||MI:0227||reverse phase chromatography||no cv term id given - auto-mapping ok
 +
|-
 +
| green fluorescence protein complementation assay||MI:0229||green fluorescence protein complementation assay||no cv term id given - auto-mapping ok
 +
|-
 +
| mammalian protein protein interaction trap||MI:0231||mammalian protein protein interaction trap||no cv term id given - auto-mapping ok
 +
|-
 +
| transcriptional complementation assay||MI:0232||transcriptional complementation assay||no cv term id given - auto-mapping ok
 +
|-
 +
| blue native page||MI:0276||blue native page||no cv term id given - auto-mapping ok
 +
|-
 +
| lex-a dimerization assay||MI:0369||lex-a dimerization assay||no cv term id given - auto-mapping ok
 +
|-
 +
| tox-r dimerization assay||MI:0370||tox-r dimerization assay||no cv term id given - auto-mapping ok
 +
|-
 +
| two hybrid pooling approach||MI:0398||two hybrid pooling approach||no cv term id given - auto-mapping ok
 +
|-
 +
| two hybrid fragment pooling approach||MI:0399||two hybrid fragment pooling approach||no cv term id given - auto-mapping ok
 +
|-
 +
| affinity technology||MI:0400||affinity technology||no cv term id given - auto-mapping ok
 +
|-
 +
| chromatin immunoprecipitation assays||MI:0402||chromatin immunoprecipitation assay||no cv term id given - auto-mapping ok
 +
|-
 +
| comigration in non denaturing gel electrophoresis||MI:0404||comigration in non denaturing gel electrophoresis||no cv term id given - auto-mapping ok
 +
|-
 +
| competition-binding||MI:0405||competition binding||no cv term id given - manual-mapping ok
 +
|-
 +
| electron tomography||MI:0410||electron tomography||no cv term id given - auto-mapping ok
 +
|-
 +
| enzyme linked immunosorbent assay||MI:0411||enzyme linked immunosorbent assay||no cv term id given - auto-mapping ok
 +
|-
 +
| electrophoretic mobility supershift assay||MI:0412||electrophoretic mobility supershift assay||no cv term id given - auto-mapping ok
 +
|-
 +
| electrophoretic mobility shift assay||MI:0413||electrophoretic mobility shift assay||no cv term id given - auto-mapping ok
 +
|-
 +
| Biochemical Activity||MI:0415||enzymatic studies||no cv term id given - manual-mapping ok - using biogrid\'s mapping
 +
|-
 +
| fluorescence microscopy||MI:0416||fluorescence microscopy||no cv term id given - auto-mapping ok
 +
|-
 +
| gtp hydrolisis||MI:0419||gtpase assay||no cv term id given - auto-mapping ok
 +
|-
 +
| kinase homogeneous time resolved fluorescence||MI:0420||kinase homogeneous time resolved fluorescence||no cv term id given - auto-mapping ok
 +
|-
 +
| in-gel kinase assay||MI:0423||in-gel kinase assay||no cv term id given - auto-mapping ok
 +
|-
 +
| kinase scintillation proximity assay||MI:0425||kinase scintillation proximity assay||no cv term id given - auto-mapping ok
 +
|-
 +
| Co-localization||MI:0428||imaging techniques||no cv term id given - manual-mapping ok - using biogrid\'s mapping
 +
|-
 +
| coloc by immunost||MI:0428||imaging techniques||no cv term id given - manual-mapping ok
 +
|-
 +
| coloc by immunost.||MI:0428||imaging techniques||no cv term id given - manual-mapping ok
 +
|-
 +
| colocalization||MI:0428||imaging techniques||no cv term id given - manual-mapping ok
 +
|-
 +
| colocalization/visualisation technologies||MI:0428||imaging techniques||no cv term id given - manual-mapping ok
 +
|-
 +
| immunostaining||MI:0428||imaging techniques||no cv term id given - manual-mapping ok
 +
|-
 +
| one-hybrid||MI:0432||one hybrid||no cv term id given - auto-mapping ok
 +
|-
 +
| yeast one hybrid||MI:0432||one hybrid||no cv term id given - auto-mapping ok
 +
|-
 +
| homogeneous time resolved fluorescence||MI:0510||homogeneous time resolved fluorescence||no cv term id given - auto-mapping ok
 +
|-
 +
| homogeneous time-resolved fluorescence||MI:0510|| ||no cv term id given - auto-mapping ok
 +
|-
 +
| methyltransferase assay||MI:0515||methyltransferase assay||no cv term id given - auto-mapping ok
 +
|-
 +
| methyltransferase radiometric assay||MI:0516||methyltransferase radiometric assay||no cv term id given - auto-mapping ok
 +
|-
 +
| enzymatic footprinting||MI:0605||enzymatic footprinting||no cv term id given - auto-mapping ok
 +
|-
 +
| lambda repressor two hybrid||MI:0655||lambda repressor two hybrid||no cv term id given - auto-mapping ok
 +
|-
 +
| systematic evolution of ligands by exponential enrichment||MI:0657||systematic evolution of ligands by exponential enrichment||no cv term id given - auto-mapping ok
 +
|-
 +
| tandem affinity purification||MI:0676||tandem affinity purification||no cv term id given - auto-mapping ok
 +
|-
 +
| not-specified||MI:0686||unspecified||no cv term id given - manual-mapping ok
 +
|-
 +
| other||MI:0686||unspecified||no cv term id given - manual-mapping ok
 +
|-
 +
| sandwich immunoassay||MI:0695||sandwich immunoassay||no cv term id given - auto-mapping ok
 +
|-
 +
| dna directed dna polymerase assay||MI:0697||dna directed dna polymerase assay||no cv term id given - auto-mapping ok
 +
|-
 +
| rna directed rna polymerase assay||MI:0700||rna directed rna polymerase assay||no cv term id given - auto-mapping ok
 +
|-
 +
| gal4 vp16 complementation||MI:0728||gal4 vp16 complementation||no cv term id given - auto-mapping ok
 +
|-
 +
| comigration in gel electrophoresis||MI:0807||comigration in gel electrophoresis||no cv term id given - auto-mapping ok
 +
|-
 +
| comigration in sds page||MI:0808||comigration in sds page||no cv term id given - auto-mapping ok
 +
|-
 +
| bimolecular fluorescence complementation||MI:0809||bimolecular fluorescence complementation||no cv term id given - auto-mapping ok
 +
|-
 +
| protease accessibility laddering||MI:0814||protease accessibility laddering||no cv term id given - auto-mapping ok
 +
|-
 +
| x-ray fiber diffraction||MI:0825||x-ray fiber diffraction||no cv term id given - auto-mapping ok
 +
|-
 +
| x ray scattering||MI:0826||x ray scattering||no cv term id given - auto-mapping ok
 +
|-
 +
| phosphotransfer assay||MI:0841||phosphotransfer assay||no cv term id given - auto-mapping ok
 +
|-
 +
| immunodepleted coimmunoprecipitation||MI:0858||immunodepleted coimmunoprecipitation||no cv term id given - auto-mapping ok
 +
|-
 +
| immunodepleted coip||MI:0858||immunodepleted coimmunoprecipitation||no cv term id given - auto-mapping ok
 +
|-
 +
| intermolecular force||MI:0859||intermolecular force||no cv term id given - auto-mapping ok
 +
|-
 +
| atomic force microscopy||MI:0872||atomic force microscopy||no cv term id given - auto-mapping ok
 +
|-
 +
| atomic-force-microscopy||MI:0872||AFM||no cv term id given - manual-mapping ok
 +
|-
 +
| neutron diffraction||MI:0893||neutron diffraction||no cv term id given - auto-mapping ok
 
|-
 
|-
 
|  
 
|  

Revision as of 15:53, 1 March 2010

In those cases where an interaction data record lists a term where a controlled vocabulary term is expected, and no controlled vocabulary term identifier is found, the term found in the record will be mapped by a curator to the closest possible term identifier using the molecular interaction ontology.

These corrections are made in two cases.

1) For interaction types where no cv term id is listed.

2) For interaction detection types where no cv term id is listed.

The mappings used are shown below. Feedback (and corrections) by databases is welcome. ian.donaldson@biotek.uio.no

These mappings are reviewed from one release to another.

Additional details are available at http://www.ebi.ac.uk/ontology-lookup/

These corrections are included in the iRefIndex MITAB files and they are used by the iRefWeb interface.

Interaction Type Terms

term found in record curator-assigned term id assigned term notes
Co-fractionation MI:0403 colocalization Interaction detection method name used inappropriately as a interaction type name
Affinity Capture-Western MI:0914 association Interaction detection method name used inappropriately as a interaction type name
Dosage Rescue MI:0796 suppressive genetic interaction defined by inequality Interaction detection method name used inappropriately as a interaction type name - assuming that the rescuing background had WT phenotype
Synthetic Rescue MI:0796 suppressive genetic interaction defined by inequality Interaction detection method name used inappropriately as a interaction type name - assuming that the rescuing background had WT phenotype
Synthetic Lethality MI:0794 synthetic genetic interaction defined by inequality Interaction detection method name used inappropriately as a interaction type name - assuming that the a and b background had WT phenotype
Synthetic Growth Defect MI:0794 synthetic genetic interaction defined by inequality Interaction detection method name used inappropriately as a interaction type name - assuming that the a and b background had WT phenotype
Dosage Lethality MI:0794 synthetic genetic interaction defined by inequality Interaction detection method name used inappropriately as a interaction type name - assuming that the a and b background had WT phenotype
Phenotypic Enhancement MI:0799 synthetic genetic interaction defined by inequality Interaction detection method name used inappropriately as a interaction type name - assuming that enhancing b background had WT phenotype
Phenotypic Suppression MI:0796 suppressive genetic interaction defined by inequality Interaction detection method name used inappropriately as a interaction type name - here it is difficult to say what the inequality between a, b, ab and WT is.
Dosage Growth Defect MI:0931 genetic interaction defined by inequality Interaction detection method name used inappropriately as a interaction type name - here i am assuming that the rescuing b background had WT phenotype
Affinity Capture-MS MI:0914 association Interaction detection method name used inappropriately as a interaction type name
Co-crystal Structure MI:0915 physical association Interaction detection method name used inappropriately as a interaction type name
Co-purification MI:0914 association Interaction detection method name used inappropriately as a interaction type name
Affinity Capture-Luminescence MI:0914 association Interaction detection method name used inappropriately as a interaction type name
Affinity Capture-RNA MI:0914 association Interaction detection method name used inappropriately as a interaction type name
Synthetic Haploinsufficiency MI:0208 genetic interaction Interaction detection method name used inappropriately as a interaction type name
DNA replication elongation MI:0190 interaction type? Impossible to map. These examples should be looked at. Map to root term for interaction type.
FRET MI:0914 association Interaction detection method name used inappropriately as a interaction type name
PCA MI:0915 physical association 99% of the time when 2 hybrid is the method, the database will list the interaction as MI:0915 (physical interaction)
Two-hybrid MI:0915 physical association 99% of the time when 2 hybrid is the method, the database will list the interaction as MI:0915 (physical interaction)
Co-localization MI:0403 colocalization Interaction detection method name used inappropriately as a interaction type name
Reconstituted Complex MI:0915 physical association
Biochemical Activity MI:0915 physical association? Individual examples should be reviewed
Protein-peptide MI:0407 direct interaction
Protein-RNA MI:0915 physical association
Biochemical reaction MI:0915 physical association? Individual examples should be reviewed
covalent interaction MI:0195 direct interaction
Far Western MI:0407 direct interaction Depends how the experiment was done. Individual cases should be examined. Interaction detection method name used inappropriately as a interaction type name
phosphorylation reaction MI:0217 phosphorylation reaction Correct term. MI term id was simply missing
dna strand elongation MI:0701 dna strand elongation Correct term. MI term id was simply missing
methylation reaction MI:0213 methylation reaction Correct term. MI term id was simply missing
dephosphorylation reaction MI:0203 dephosphorylation reaction Correct term. MI term id was simply missing
demethylation reaction MI:0871 demethylation reaction Correct term. MI term id was simply missing
acetylation reaction MI:0192 acetylation reaction Correct term. MI term id was simply missing
ubiquitination reaction MI:0220 ubiquitination reaction Correct term. MI term id was simply missing
cleavage reaction MI:0194 cleavage reaction Correct term. MI term id was simply missing
deacetylation reaction MI:0197 deacetylation reaction Correct term. MI term id was simply missing
adp ribosylation reaction MI:0557 adp ribosylation reaction Correct term. MI term id was simply missing
sumoylation reaction MI:0566 sumoylation reaction Correct term. MI term id was simply missing
phosphotransfer reaction MI:0844 phosphotransfer reaction Correct term. MI term id was simply missing
neddylation reaction MI:0567 neddylation reaction Correct term. MI term id was simply missing
palmitoylation reaction MI:0216 palmitoylation reaction Correct term. MI term id was simply missing
deneddylation reaction MI:0569 deneddylation reaction Correct term. MI term id was simply missing
deubiquitination reaction MI:0204 deubiquitination reaction Correct term. MI term id was simply missing
glycosylation reaction MI:0559 glycosylation reaction Correct term. MI term id was simply missing
hydroxylation reaction MI:0210 hydroxylation reaction Correct term. MI term id was simply missing
amidation reaction MI:0193 amidation reaction Correct term. MI term id was simply missing


Interaction Detection Method Terms

term found in record curator-assigned term id assigned term notes
interaction detection method MI:0001 interaction detection method correct term, MI term id was missing
Affinity Capture-Luminescence MI:0004 affinity chromatography technology biogrids mapping
Affinity Capture-MS MI:0004 affinity chromatography technology biogrids mapping
Affinity Capture-RNA MI:0004 affinity chromatography technology biogrids mapping
Affinity Capture-Western MI:0004 affinity chromatography technology biogrids mapping
Affinity purification MI:0004 affinity chromatography technology alternate label for this term was listed with no MI term id
LRET MI:0012 bioluminescence resonance energy transfer alternate label for this term was listed with no MI term id
bacterial two-hybrid MI:0014 adenylate cyclase complementation alternate label for this term was listed with no MI term id
two-hybrid-test MI:0018 two hybrid variation on preferred term was listed with no MI term id
Gal4 transcription regeneration MI:0018 two hybrid alternate label for this term was listed with no MI term id
immunoprecipitation MI:0019 coimmunoprecipitation alternate label for this term was listed with no MI term id
Co-IP MI:0019 coimmunoprecipitation alternate label for this term was listed with no MI term id
cosedimentation through density gradients MI:0029 cosedimentation through density gradient correct term, MI term id was missing
cross-linking studies MI:0030 cross-linking study variation on preferred term was listed with no MI term id
cross-linking MI:0030 cross-linking study variation on preferred term was listed with no MI term id
Label transfer techniques MI:0031 protein cross-linking with a bifunctional reagent alternate label for this term was listed with no MI term id
Photoaffinity labelling MI:0031 protein cross-linking with a bifunctional reagent alternate label for this term was listed with no MI term id
Electron cryomicroscopy MI:0040 electron microscopy alternate label for this term was listed with no MI term id
Electron crystallography MI:0040 electron microscopy alternate label for this term was listed with no MI term id
GTPase MI:0419 gtpase assay variation on preferred term was listed with no MI term id
Affinity blotting MI:0047 far western blotting alternate label for this term was listed with no MI term id
Far Western MI:0047 far western blotting variation on preferred term was listed with no MI term id
far-western MI:0047 far western blotting variation on preferred term was listed with no MI term id
Filter overlay assay MI:0049 filter binding alternate label for this term was listed with no MI term id
fluorescence technologies MI:0051 fluorescence technology variation on preferred term was listed with no MI term id
fluorescence-anisotropy MI:0053 fluorescence polarization spectroscopy variation on preferred term was listed with no MI term id
FRET analysis MI:0055 fluorescent resonance energy transfer alternate label for this term was listed with no MI term id
resonance-energy-transfer MI:0055 fluorescent resonance energy transfer variation on preferred term was listed with no MI term id
RET MI:0055 fluorescent resonance energy transfer alternate label for this term was listed with no MI term id
in silico methods MI:0063 interaction prediction alternate label for this term was listed with no MI term id
mass-spectrometry MI:0069 mass spectrometry studies of complexes listed term was a partial match to this term, no MI term id was given - individual cases should be reviewed
Size Exclusion Chromatography MI:0071 molecular sieving alternate label for this term was listed with no MI term id
Siezing column MI:0071 molecular sieving alternate label for this term was listed with no MI term id
PCA MI:0090 protein complementation assay alternate label for this term was listed with no MI term id
chromatography technologies MI:0091 chromatography technology variation on preferred term was listed with no MI term id
column chromatography MI:0091 chromatography technology alternate label for this term was listed with no MI term id
Reconstituted Complex MI:0096 pull down biogrids mapping
RIA Radio Immuno Assay MI:0099 scintillation proximity assay alternate label for this term was listed with no MI term id
BIAcore[r] MI:0107 surface plasmon resonance alternate label for this term was listed with no MI term id
Optical biosensor MI:0107 surface plasmon resonance alternate label for this term was listed with no MI term id
immunoblotting MI:0113 western blot immunoblotting might be used as a method of interaction detection though it is usually a method for participant identification - cases should be reviewed individually
three-dimensional-structure MI:0114 x-ray crystallography though other methods might be used to define three dimensional structure, this seems to be the closest match
Dosage Growth Defect MI:0254 genetic interference biogrid\'s mapping
Dosage Lethality MI:0254 genetic interference biogrid\'s mapping
Dosage Rescue MI:0254 genetic interference biogrid\'s mapping
Phenotypic Enhancement MI:0254 genetic interference biogrid\'s mapping
Phenotypic Suppression MI:0254 genetic interference biogrid\'s mapping
Synthetic Growth Defect MI:0254 genetic interference biogrid\'s mapping
Synthetic Lethality MI:0254 genetic interference biogrid\'s mapping
Synthetic Rescue MI:0254 genetic interference biogrid\'s mapping
modeled by author MI:0363 inferred by author alternate label for this term was listed with no MI term id
modelled by author MI:0363 inferred by author alternate label for this term was listed with no MI term id
modeled by curator MI:0364 inferred by curator alternate label for this term was listed with no MI term id
modelled by curator MI:0364 inferred by curator alternate label for this term was listed with no MI term id
affinity technologies MI:0400 affinity technology variation on preferred term was listed with no MI term id
Co-fractionation MI:0401 biochemical biogrids mapping
Co-purification MI:0401 biochemical biogrids mapping
colocalization by immunostaining MI:0022 colocalization by immunostaining correct term, MI term id was missing
elisa: enzyme-linked immunosorbent assay MI:0411 enzyme linked immunosorbent assay variation on preferred term was listed with no MI term id
Gel retardation assay MI:0413 electrophoretic mobility shift assay alternate label for this term was listed with no MI term id
band shift MI:0413 electrophoretic mobility shift assay alternate label for this term was listed with no MI term id
gel-retardation-assays MI:0413 electrophoretic mobility shift assay variation on preferred term was listed with no MI term id
microscopy MI:0428 imaging technique alternate label for this term was listed with no MI term id
colocalization by fluorescent probes cloning MI:0021 colocalization by fluorescent probes cloning correct term, MI term id was missing
yeast one-hybrid MI:0432 one hybrid alternate label for this term was listed with no MI term id
bridge assay MI:0437 protein tri hybrid alternate label for this term was listed with no MI term id
trihybrid MI:0437 protein tri hybrid alternate label for this term was listed with no MI term id
Synthetic Haploinsufficiency MI:0254 genetic interference biogrid\'s mapping
homogeneous time-resolved fluo MI:0510 homogeneous time resolved fluorescence variation on preferred term was listed with no MI term id
in vitro evolution of nucleic acids MI:0657 systematic evolution of ligands by exponential enrichment alternate label for this term was listed with no MI term id
tap tag coimmunoprecipitation MI:0676 tandem affinity purification variation on preferred term was listed with no MI term id
antigen capture assay MI:0678 antibody array alternate label for this term was listed with no MI term id
interaction-adhesion-assay MI:0686 unspecified method cant find a resonable match to this term
Invivo MI:0686 unspecified method this is an obsolete term that is undefined so it is being mapped to \"unspecified method\"
Protein-RNA MI:0686 unspecified method biogrid\'s mapping
transient-coexpression MI:0686 unspecified method cant find a resonable match to this term
in vivo MI:0686 unspecified method this is an obsolete term that is undefined so it is being mapped to \"unspecified method\"
NA MI:0686 unspecified method cant find a resonable match to this term
Protein-peptide MI:0686 unspecified method biogrid\'s mapping
monoclonal-antibody-blockade MI:0686 unspecified method cant find a resonable match to this term
in vitro MI:0686 unspecified method this is an obsolete term that is undefined so it is being mapped to \"unspecified method\"
IEC MI:0686 unspecified method cant find a resonable match to this term
KISS MI:0728 gal4 vp16 complementation alternate label for this term was listed with no MI term id
mammalian two hybrid MI:0728 gal4 vp16 complementation alternate label for this term was listed with no MI term id
karyoplasmic interaction ion strategy MI:0728 gal4 vp16 complementation alternate label for this term was listed with no MI term id
autoradiography MI:0833 autoradiography this term does have a MI term id although it is difficuly to see that it would be a legitamate interaction detection method - cases should be reviewed individually
surface-plasmon-resonance-chip MI:0921 surface plasmon resonance array variation on a preferred term was listed with no MI term id (chip = array?)
deuterium-hydrogen-exchange MI:0944 mass spectrometry study of hydrogen/deuterium exchange mass spectrometry study of hydrogen/deuterium exchange
affinity chromatography technologies MI:0004 affinity chromatography technology variation on preferred term was listed with no MI term id
affinity chromatography technology MI:0004 affinity chromatography technology correct term, MI term id was missing
affinity-chromatography MI:0004 affinity chromatography technology variation on preferred term was listed with no MI term id
anti bait coimmunoprecipitation MI:0006 anti bait coimmunoprecipitation no cv term id given - auto-mapping ok
anti tag coimmunoprecipitation MI:0007 anti tag coimmunoprecipitation no cv term id given - auto-mapping ok
beta galactosidase complementation MI:0010 beta galactosidase complementation no cv term id given - auto-mapping ok
beta lactamase complementation MI:0011 beta lactamase complementation no cv term id given - auto-mapping ok
bioluminescence resonance energy transfer MI:0012 bioluminescence resonance energy transfer no cv term id given - auto-mapping ok
adenylate cyclase complementation MI:0014 adenylate cyclase complementation no cv term id given - auto-mapping ok
circular dichroism MI:0016 circular dichroism no cv term id given - auto-mapping ok
classical fluorescence spectroscopy MI:0017 classical fluorescence spectroscopy no cv term id given - auto-mapping ok
2-hybrid MI:0018 two hybrid no cv term id given - auto-mapping ok
classical two hybrid MI:0018 two hybrid no cv term id given - auto-mapping ok
Two-hybrid MI:0018 two hybrid no cv term id given - mapping ok - used biogrids mapping
yeast two hybrid MI:0018 two hybrid no cv term id given - auto-mapping ok
co-immunoprecipitation MI:0019 coimmunoprecipitation no cv term id given - auto-mapping ok
coimmunoprecipitation MI:0019 coimmunoprecipitation no cv term id given - auto-mapping ok
coip: coimmunoprecipitation MI:0019 coimmunoprecipitation no cv term id given - auto-mapping ok
transmission electron microscopy MI:0020 transmission electron microscopy no cv term id given - auto-mapping ok
cosedimentation in solution MI:0028 cosedimentation in solution no cv term id given - auto-mapping ok
cosedimentation through density gradient MI:0029 cosedimentation through density gradient no cv term id given - auto-mapping ok
sucrose-gradient-sedimentation MI:0029 density sedimentatio no cv term id given - auto-mapping ok
cross-linking study MI:0030 cross-linking study no cv term id given - auto-mapping ok
protein cross-linking with a bifunctional reagent MI:0031 protein cross-linking with a bifunctional reagent no cv term id given - auto-mapping ok
dynamic light scattering MI:0038 dynamic light scattering no cv term id given - auto-mapping ok
electron-microscopy MI:0040 electron microscopy no cv term id given - auto-mapping ok
electron paramagnetic resonance MI:0042 electron paramagnetic resonance no cv term id given - auto-mapping ok
ESR MI:0042 electron paramagnetic resonance no cv term id given - auto-mapping ok
electron resonance MI:0043 electron resonance no cv term id given - auto-mapping ok
electron-spin-resonance MI:0043 electron resonance no cv term id given - auto-mapping ok
experimental interaction detection MI:0045 experimental interaction detection no cv term id given - auto-mapping ok
experimental knowledge based MI:0046 experimental info no cv term id given - auto-mapping ok - this is the preferred term for this
filamentous phage display MI:0048 filamentous phage display no cv term id given - auto-mapping ok
fluorescence technology MI:0051 fluorescence technology no cv term id given - auto-mapping ok
fluorescence correlation spectroscopy MI:0052 fluorescence correlation spectroscopy no cv term id given - auto-mapping ok
Fluorescence anisotropy MI:0053 fluorescence polarization spectroscopy no cv term id given - auto-mapping ok
fluorescence polarization spectroscopy MI:0053 fluorescence polarization spectroscopy no cv term id given - auto-mapping ok
Flow cytometry MI:0054 fluorescence-activated cell sorting no cv term id given - auto-mapping ok
fluorescence-activated cell sorting MI:0054 fluorescence-activated cell sorting no cv term id given - auto-mapping ok
fluorescent resonance energy transfer MI:0055 fluorescent resonance energy transfer no cv term id given - auto-mapping ok
interaction prediction MI:0063 interaction prediction no cv term id given - auto-mapping ok
isothermal titration calorimetry MI:0065 isothermal titration calorimetry no cv term id given - auto-mapping ok
lambda phage display MI:0066 lambda phage display no cv term id given - auto-mapping ok
light-scattering MI:0067 light scattering no cv term id given - auto-mapping ok
mass spectrometry studies of complexes MI:0069 mass spectrometry studies of complexes no cv term id given - auto-mapping ok
equilibrium-dialysis MI:0071 molecular sieving no cv term id given - manual-mapping ok - individual cases should be reviewed
Gel Filtration MI:0071 molecular sieving no cv term id given - manual-mapping ok - individual cases should be reviewed
gel-filtration-chromatography MI:0071 molecular sieving no cv term id given - manual-mapping ok - individual cases should be reviewed
membrane-filtration MI:0071 molecular sieving no cv term id given - manual-mapping ok - individual cases should be reviewed
nuclear magnetic resonance MI:0077 nuclear magnetic resonance no cv term id given - auto-mapping ok
hybridization MI:0079 other biochemic tech no cv term id given - auto-mapping ok - individual cases should be reviewed
phage-display MI:0084 phage display no cv term id given - auto-mapping ok
protein complementation assay MI:0090 protein complementation assay no cv term id given - auto-mapping ok
chromatography technology MI:0091 chromatography technology no cv term id given - auto-mapping ok
reverse ras recruitment system MI:0097 reverse ras recruitment system no cv term id given - auto-mapping ok
scintillation proximity assay MI:0099 scintillation proximity assay no cv term id given - auto-mapping ok
static light scattering MI:0104 static light scattering no cv term id given - auto-mapping ok
surface plasmon resonance MI:0107 surface plasmon resonance no cv term id given - auto-mapping ok
t7 phage display MI:0108 t7 phage display no cv term id given - auto-mapping ok
dihydrofolate reductase reconstruction MI:0111 dihydrofolate reductase reconstruction no cv term id given - auto-mapping ok
ubiquitin reconstruction MI:0112 ubiquitin reconstruction no cv term id given - auto-mapping ok
Co-crystal Structure MI:0114 x-ray no cv term id given - manual-mapping ok - using biogrid\'s mapping
x-ray crystallography MI:0114 x-ray crystallography no cv term id given - auto-mapping ok
x-ray: x-ray crystallography MI:0114 x-ray crystallography no cv term id given - auto-mapping ok
ion exchange chromatography MI:0226 ion exchange chromatography no cv term id given - auto-mapping ok
reverse phase chromatography MI:0227 reverse phase chromatography no cv term id given - auto-mapping ok
green fluorescence protein complementation assay MI:0229 green fluorescence protein complementation assay no cv term id given - auto-mapping ok
mammalian protein protein interaction trap MI:0231 mammalian protein protein interaction trap no cv term id given - auto-mapping ok
transcriptional complementation assay MI:0232 transcriptional complementation assay no cv term id given - auto-mapping ok
blue native page MI:0276 blue native page no cv term id given - auto-mapping ok
lex-a dimerization assay MI:0369 lex-a dimerization assay no cv term id given - auto-mapping ok
tox-r dimerization assay MI:0370 tox-r dimerization assay no cv term id given - auto-mapping ok
two hybrid pooling approach MI:0398 two hybrid pooling approach no cv term id given - auto-mapping ok
two hybrid fragment pooling approach MI:0399 two hybrid fragment pooling approach no cv term id given - auto-mapping ok
affinity technology MI:0400 affinity technology no cv term id given - auto-mapping ok
chromatin immunoprecipitation assays MI:0402 chromatin immunoprecipitation assay no cv term id given - auto-mapping ok
comigration in non denaturing gel electrophoresis MI:0404 comigration in non denaturing gel electrophoresis no cv term id given - auto-mapping ok
competition-binding MI:0405 competition binding no cv term id given - manual-mapping ok
electron tomography MI:0410 electron tomography no cv term id given - auto-mapping ok
enzyme linked immunosorbent assay MI:0411 enzyme linked immunosorbent assay no cv term id given - auto-mapping ok
electrophoretic mobility supershift assay MI:0412 electrophoretic mobility supershift assay no cv term id given - auto-mapping ok
electrophoretic mobility shift assay MI:0413 electrophoretic mobility shift assay no cv term id given - auto-mapping ok
Biochemical Activity MI:0415 enzymatic studies no cv term id given - manual-mapping ok - using biogrid\'s mapping
fluorescence microscopy MI:0416 fluorescence microscopy no cv term id given - auto-mapping ok
gtp hydrolisis MI:0419 gtpase assay no cv term id given - auto-mapping ok
kinase homogeneous time resolved fluorescence MI:0420 kinase homogeneous time resolved fluorescence no cv term id given - auto-mapping ok
in-gel kinase assay MI:0423 in-gel kinase assay no cv term id given - auto-mapping ok
kinase scintillation proximity assay MI:0425 kinase scintillation proximity assay no cv term id given - auto-mapping ok
Co-localization MI:0428 imaging techniques no cv term id given - manual-mapping ok - using biogrid\'s mapping
coloc by immunost MI:0428 imaging techniques no cv term id given - manual-mapping ok
coloc by immunost. MI:0428 imaging techniques no cv term id given - manual-mapping ok
colocalization MI:0428 imaging techniques no cv term id given - manual-mapping ok
colocalization/visualisation technologies MI:0428 imaging techniques no cv term id given - manual-mapping ok
immunostaining MI:0428 imaging techniques no cv term id given - manual-mapping ok
one-hybrid MI:0432 one hybrid no cv term id given - auto-mapping ok
yeast one hybrid MI:0432 one hybrid no cv term id given - auto-mapping ok
homogeneous time resolved fluorescence MI:0510 homogeneous time resolved fluorescence no cv term id given - auto-mapping ok
homogeneous time-resolved fluorescence MI:0510 no cv term id given - auto-mapping ok
methyltransferase assay MI:0515 methyltransferase assay no cv term id given - auto-mapping ok
methyltransferase radiometric assay MI:0516 methyltransferase radiometric assay no cv term id given - auto-mapping ok
enzymatic footprinting MI:0605 enzymatic footprinting no cv term id given - auto-mapping ok
lambda repressor two hybrid MI:0655 lambda repressor two hybrid no cv term id given - auto-mapping ok
systematic evolution of ligands by exponential enrichment MI:0657 systematic evolution of ligands by exponential enrichment no cv term id given - auto-mapping ok
tandem affinity purification MI:0676 tandem affinity purification no cv term id given - auto-mapping ok
not-specified MI:0686 unspecified no cv term id given - manual-mapping ok
other MI:0686 unspecified no cv term id given - manual-mapping ok
sandwich immunoassay MI:0695 sandwich immunoassay no cv term id given - auto-mapping ok
dna directed dna polymerase assay MI:0697 dna directed dna polymerase assay no cv term id given - auto-mapping ok
rna directed rna polymerase assay MI:0700 rna directed rna polymerase assay no cv term id given - auto-mapping ok
gal4 vp16 complementation MI:0728 gal4 vp16 complementation no cv term id given - auto-mapping ok
comigration in gel electrophoresis MI:0807 comigration in gel electrophoresis no cv term id given - auto-mapping ok
comigration in sds page MI:0808 comigration in sds page no cv term id given - auto-mapping ok
bimolecular fluorescence complementation MI:0809 bimolecular fluorescence complementation no cv term id given - auto-mapping ok
protease accessibility laddering MI:0814 protease accessibility laddering no cv term id given - auto-mapping ok
x-ray fiber diffraction MI:0825 x-ray fiber diffraction no cv term id given - auto-mapping ok
x ray scattering MI:0826 x ray scattering no cv term id given - auto-mapping ok
phosphotransfer assay MI:0841 phosphotransfer assay no cv term id given - auto-mapping ok
immunodepleted coimmunoprecipitation MI:0858 immunodepleted coimmunoprecipitation no cv term id given - auto-mapping ok
immunodepleted coip MI:0858 immunodepleted coimmunoprecipitation no cv term id given - auto-mapping ok
intermolecular force MI:0859 intermolecular force no cv term id given - auto-mapping ok
atomic force microscopy MI:0872 atomic force microscopy no cv term id given - auto-mapping ok
atomic-force-microscopy MI:0872 AFM no cv term id given - manual-mapping ok
neutron diffraction MI:0893 neutron diffraction no cv term id given - auto-mapping ok


All iRefIndex Pages

Follow this link for a listing of all iRefIndex related pages (archived and current).