Difference between revisions of "Protein identifier mapping"
From irefindex
(Created page with 'We have made a file which provides mappings between iRefIndex identifiers and popular external identifiers. The file is a tab delimited text file and the first row starting with …') |
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We have made a file which provides mappings between iRefIndex identifiers and popular external identifiers. The file is a tab delimited text file and the first row starting with the "#" provides the column headers. | We have made a file which provides mappings between iRefIndex identifiers and popular external identifiers. The file is a tab delimited text file and the first row starting with the "#" provides the column headers. | ||
| + | |||
| + | The column descriptions: | ||
| + | {| {{table}} | ||
| + | | align="center" style="background:#f0f0f0;"|'''Column number''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''Column name''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''Description''' | ||
| + | |- | ||
| + | | 1||db||Source of the external identifier (e.g. UniProt, RefSeq) | ||
| + | |- | ||
| + | | 2||acc||The external identifier (e.g. Q4U9M9) | ||
| + | |- | ||
| + | | 3||entrezGeneid||Entrez gene id. This is provided only for RefSeq identifiers | ||
| + | |- | ||
| + | | 4||irogid||Integer version redundant group identifier(e.g. 3156116, current maximum value=, this is a MySQL ). | ||
| + | |- | ||
| + | | 5||rogid||String version of the redundant object group (64 bit version of the hash digest of primary amino acid sequence with the NSBI taxonomy identifier appended at the end) | ||
| + | |- | ||
| + | | 6||icrogid||Integer version of the canonical redundant object group (A selected irogid to represent the canonical group) | ||
| + | |- | ||
| + | | 7||crogid||String version of the canonical redundant object group (A selected rogid to represent the canonical group) | ||
| + | |- | ||
| + | | | ||
| + | |} | ||
Revision as of 08:58, 21 October 2010
We have made a file which provides mappings between iRefIndex identifiers and popular external identifiers. The file is a tab delimited text file and the first row starting with the "#" provides the column headers.
The column descriptions:
| Column number | Column name | Description |
| 1 | db | Source of the external identifier (e.g. UniProt, RefSeq) |
| 2 | acc | The external identifier (e.g. Q4U9M9) |
| 3 | entrezGeneid | Entrez gene id. This is provided only for RefSeq identifiers |
| 4 | irogid | Integer version redundant group identifier(e.g. 3156116, current maximum value=, this is a MySQL ). |
| 5 | rogid | String version of the redundant object group (64 bit version of the hash digest of primary amino acid sequence with the NSBI taxonomy identifier appended at the end) |
| 6 | icrogid | Integer version of the canonical redundant object group (A selected irogid to represent the canonical group) |
| 7 | crogid | String version of the canonical redundant object group (A selected rogid to represent the canonical group) |
