Difference between revisions of "SEGUID library"

From irefindex
 
(9 intermediate revisions by the same user not shown)
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Help file for iRefIndex SEGUID library
 
Help file for iRefIndex SEGUID library
  
Creating SEGUID;
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package tmp;
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== Creating SEGUID and ROGID ==
  
 
import java.util.Arrays;
 
import java.util.Arrays;
 
import sha.etc.no.uio.biotek.SHA_Main;
 
import sha.etc.no.uio.biotek.SHA_Main;
  
 
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public class Main{
public class Main {
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    /**
 
    * @param args the command line arguments
 
    */
 
 
     public static void main(String[] args) {
 
     public static void main(String[] args) {
      SHA_Main main = new SHA_Main();
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        SHA_Main main = new SHA_Main();
 
         String primary_amino_acid_sequence = "mdnmsitntp tsndaclsiv hslmchrqgg esetfakrai";
 
         String primary_amino_acid_sequence = "mdnmsitntp tsndaclsiv hslmchrqgg esetfakrai";
 
         int taxid =9606;
 
         int taxid =9606;
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}
 
}
  
 
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== Creating RIGID ==
 
 
 
 
Creating RIGID;
 
  
 
import java.util.Arrays;
 
import java.util.Arrays;
 
import sha.etc.no.uio.biotek.SHA_Main;
 
import sha.etc.no.uio.biotek.SHA_Main;
  
public class Main {
+
public class Main {  
    /**
 
    * @param args the command line arguments
 
    */
 
 
     public static void main(String[] args) {
 
     public static void main(String[] args) {
 
         SHA_Main main = new SHA_Main();
 
         SHA_Main main = new SHA_Main();

Latest revision as of 15:15, 4 February 2009

Help file for iRefIndex SEGUID library


Creating SEGUID and ROGID

import java.util.Arrays; import sha.etc.no.uio.biotek.SHA_Main;

public class Main{

   public static void main(String[] args) {
       SHA_Main main = new SHA_Main();
       String primary_amino_acid_sequence = "mdnmsitntp tsndaclsiv hslmchrqgg esetfakrai";
       int taxid =9606;
       String seguid = main.getSegu(primary_amino_acid_sequence);
       System.out.println("SEGUID = "+seguid);
       System.out.println("ROGID = "+seguid+taxid);
   }

}

Creating RIGID

import java.util.Arrays; import sha.etc.no.uio.biotek.SHA_Main;

public class Main {

   public static void main(String[] args) {
       SHA_Main main = new SHA_Main();
       String[] segulist_2 = {"waTMnn0uXSbf7bracJUScX9ckEc9606", "A9Ga60ipENjSsgt59TfNchYqXtw9606"};
       Arrays.sort(segulist_2);
       String concat = segulist_2[0] + segulist_2[1];
       System.out.println("RIGID= " + main.getSeguForWithNum(concat));
   }

}