Difference between revisions of "SEGUID library"

From irefindex
 
Line 10: Line 10:
 
   
 
   
 
     public static void main(String[] args) {
 
     public static void main(String[] args) {
      SHA_Main main = new SHA_Main();
+
        SHA_Main main = new SHA_Main();
 
         String primary_amino_acid_sequence = "mdnmsitntp tsndaclsiv hslmchrqgg esetfakrai";
 
         String primary_amino_acid_sequence = "mdnmsitntp tsndaclsiv hslmchrqgg esetfakrai";
 
         int taxid =9606;
 
         int taxid =9606;

Latest revision as of 15:15, 4 February 2009

Help file for iRefIndex SEGUID library


Creating SEGUID and ROGID

import java.util.Arrays; import sha.etc.no.uio.biotek.SHA_Main;

public class Main{

   public static void main(String[] args) {
       SHA_Main main = new SHA_Main();
       String primary_amino_acid_sequence = "mdnmsitntp tsndaclsiv hslmchrqgg esetfakrai";
       int taxid =9606;
       String seguid = main.getSegu(primary_amino_acid_sequence);
       System.out.println("SEGUID = "+seguid);
       System.out.println("ROGID = "+seguid+taxid);
   }

}

Creating RIGID

import java.util.Arrays; import sha.etc.no.uio.biotek.SHA_Main;

public class Main {

   public static void main(String[] args) {
       SHA_Main main = new SHA_Main();
       String[] segulist_2 = {"waTMnn0uXSbf7bracJUScX9ckEc9606", "A9Ga60ipENjSsgt59TfNchYqXtw9606"};
       Arrays.sort(segulist_2);
       String concat = segulist_2[0] + segulist_2[1];
       System.out.println("RIGID= " + main.getSeguForWithNum(concat));
   }

}