Difference between revisions of "Sources"

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This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.
 
This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.
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== Interaction related resources ==
  
 
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Revision as of 09:58, 6 November 2008

Last edited: November 11th, 2008 Applies to iRefIndex release: 1.0, 1.1 and 2.0 Release date: November 11th, 2008 Authors: Ian Donaldson and Sabry Razick Database: iRefIndex (http://irefindex.uio.no) Organization: Biotechnology Centre of Oslo, University of Oslo (http://www.biotek.uio.no/)

Description:

This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.


Interaction related resources

Source Format Location Version (date)
BIND, Tab-delimited text file. ftp://ftp.bind.ca/pub/BIND/data/bindflatfiles/bindindex/ 20050525.complex2refs.txt 20050525.ints.txt 20050525.refs.txt 20050525.complexes.txt 20050525.labels.txt 20050525.complex2subunits.txt These file are no longer available via ftp but are available from the authors. BIND archival content is now managed by Thomson Scientific. See http://bond.unleashedinformatics.com/ 05/25/05
BioGRID PSI-MI 2.5 http://www.thebiogrid.org/downloads.php BIOGRID-ORGANISM-2.0.38.psi25.zip Version 2.0.38
DIP PSI-MI 2.5 http://dip.doe-mbi.ucla.edu/dip/Download.cgi dip20080114.mif25.gz 01/14/08
HPRD, PSI-MI 2.5 http://www.hprd.org/download/ HPRD_SINGLE_PSIMI_090107.xml.tar.gz Release 7. September 1, 2007
IntAct, PSI-MI 2.5 ftp://ftp.ebi.ac.uk/pub/databases/intact/2008-03-14/psi25/ pmidMIF25.zip 03/15/08
MINT PSI-MI 2.5 ftp://mint.bio.uniroma2.it/pub/release/psi/2007-12-21/psi25/ full.psi25.zip 12/21/07
MPact PSI-MI 2.5 ftp://ftpmips.gsf.de/yeast/PPI/ mpact-complete.psi25.xml April 19, 2007
MPPI PSI-MI 1.0 http://mips.gsf.de/proj/ppi/data/mppi.gz Not available
OPHID PSI-MI 1.0 http://ophid.utoronto.ca/ophid/downloads.html (This service no longer available, please refer to http://ophid.utoronto.ca/ophidv2.201/) 07/18/06