Difference between revisions of "Sources"

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Last edited: November 11th, 2008
 
Applies to iRefIndex release: 1.0, 1.1 and 2.0
 
Release date: November 11th, 2008
 
Authors: Ian Donaldson and Sabry Razick
 
Database: iRefIndex (http://irefindex.uio.no)
 
Organization: Biotechnology Centre of Oslo, University of Oslo (http://www.biotek.uio.no/)
 
  
Description:
 
 
This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.
 
 
 
== Interaction related resources ==
 
 
{| {{table}}
 
| align="center" style="background:#f0f0f0;"|'''Source'''
 
| align="center" style="background:#f0f0f0;"|'''Format'''
 
| align="center" style="background:#f0f0f0;"|'''Location'''
 
| align="center" style="background:#f0f0f0;"|'''Version (date)'''
 
|-
 
| BIND,||Tab-delimited text file.||ftp://ftp.bind.ca/pub/BIND/data/bindflatfiles/bindindex/  20050525.complex2refs.txt      20050525.ints.txt          20050525.refs.txt 20050525.complexes.txt          20050525.labels.txt        20050525.complex2subunits.txt  These file are no longer available via ftp but are available from the authors.  BIND archival content is now managed by Thomson Scientific. See http://bond.unleashedinformatics.com/  ||05/25/05
 
|-
 
| BioGRID||PSI-MI 2.5||http://www.thebiogrid.org/downloads.php BIOGRID-ORGANISM-2.0.38.psi25.zip||Version 2.0.38
 
|-
 
| DIP||PSI-MI 2.5||http://dip.doe-mbi.ucla.edu/dip/Download.cgi dip20080114.mif25.gz||01/14/08
 
|-
 
| HPRD,||PSI-MI 2.5||http://www.hprd.org/download/ HPRD_SINGLE_PSIMI_090107.xml.tar.gz||Release 7. September 1, 2007
 
|-
 
| IntAct,||PSI-MI 2.5||ftp://ftp.ebi.ac.uk/pub/databases/intact/2008-03-14/psi25/ pmidMIF25.zip||03/15/08
 
|-
 
| MINT||PSI-MI 2.5||ftp://mint.bio.uniroma2.it/pub/release/psi/2007-12-21/psi25/ full.psi25.zip||12/21/07
 
|-
 
| MPact||PSI-MI 2.5||ftp://ftpmips.gsf.de/yeast/PPI/ mpact-complete.psi25.xml||April 19, 2007 
 
|-
 
| MPPI||PSI-MI 1.0||http://mips.gsf.de/proj/ppi/data/mppi.gz||Not available
 
|-
 
| OPHID||PSI-MI 1.0||http://ophid.utoronto.ca/ophid/downloads.html (This service no longer available, please refer to http://ophid.utoronto.ca/ophidv2.201/)||07/18/06
 
|-
 
|
 
|}
 

Latest revision as of 13:18, 20 November 2008