http://irefindex.vib.be/wiki/index.php?title=Sources_iRefIndex_10.0&feed=atom&action=history
Sources iRefIndex 10.0 - Revision history
2024-03-28T23:21:00Z
Revision history for this page on the wiki
MediaWiki 1.33.0
http://irefindex.vib.be/wiki/index.php?title=Sources_iRefIndex_10.0&diff=4132&oldid=prev
Admin: Created page with "Last edited: {{REVISIONYEAR}}-{{padleft:{{REVISIONMONTH}}|2}}-{{REVISIONDAY2}} Applies to iRefIndex release: 10.0 Release date: 2013-03-02 Authors: Paul Boddie and Ian Dona..."
2013-03-14T12:14:33Z
<p>Created page with "Last edited: {{REVISIONYEAR}}-{{padleft:{{REVISIONMONTH}}|2}}-{{REVISIONDAY2}} Applies to iRefIndex release: 10.0 Release date: 2013-03-02 Authors: Paul Boddie and Ian Dona..."</p>
<p><b>New page</b></p><div>Last edited: {{REVISIONYEAR}}-{{padleft:{{REVISIONMONTH}}|2}}-{{REVISIONDAY2}}<br />
<br />
Applies to iRefIndex release: 10.0<br />
<br />
Release date: 2013-03-02<br />
<br />
Authors: Paul Boddie and Ian Donaldson<br />
<br />
Database: iRefIndex (http://irefindex.org)<br />
<br />
<br />
Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.<br />
Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.<br />
*For statistics on the full dataset please refer to: http://irefindex.org/wiki/index.php?title=Statistics_iRefIndex_10.0<br />
<br />
<br />
<pre><br />
Interaction data sources<br />
<br />
BIND DATE 2005-05-25<br />
BIND RELEASE_URL<br />
http://bond.unleashedinformatics.com/downloads/data/BIND/data/bindflatfiles/bindindex/<br />
BIND DOWNLOAD_FILES 20060525*.txt<br />
BIND_TRANSLATION DATE 2010-12-15 15:54:01<br />
BIND_TRANSLATION RELEASE_URL http://download.baderlab.org/BINDTranslation/release1_0/<br />
BIND_TRANSLATION DOWNLOAD_FILES BINDTranslation_v1_xml_AllSpecies.tar.gz<br />
BIOGRID DATE 2012-08-31 19:24:08<br />
BIOGRID RELEASE_URL http://thebiogrid.org/downloads/archives/Release%20Archive/BIOGRID-3.1.92/<br />
BIOGRID DOWNLOAD_FILES BIOGRID-ALL-3.1.92.psi25.zip<br />
CORUM DATE 2009-12-02 18:24:15<br />
CORUM RELEASE_URL http://mips.gsf.de/genre/export/sites/default/corum/<br />
CORUM DOWNLOAD_FILES allComplexes.psimi.zip<br />
DIP DOWNLOAD ftp://dip.doe-mbi.ucla.edu/2012/mif25/dip20120818.mif25.gz<br />
DIP FILENAME dip20120818.mif25<br />
DIP DATE 08/18/2012<br />
DIP RELEASE_URL http://dip.doe-mbi.ucla.edu/dip/Download.cgi?SM=3<br />
HPRD FILENAME HPRD_PSIMI_041310.tar.gz<br />
HPRD VERSION Release 9<br />
HPRD DATE 04-13-10<br />
HPRD RELEASE_URL http://www.hprd.org/RELEASE9/<br />
HPRD DOWNLOAD_FILES HPRD_PSIMI_041310.tar.gz<br />
INTACT DATE 2012-12-14 20:04:00<br />
INTACT RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psi25/<br />
INTACT DOWNLOAD_FILES pmidMIF25.zip<br />
MATRIXDB DATE 2012-08-03 11:26:01<br />
MATRIXDB RELEASE_URL http://matrixdb.ibcp.fr/cgi-bin/download%3C../../<br />
MATRIXDB DOWNLOAD_FILES MatrixDB_20120801.xml.zip<br />
MINT DATE 2011-12-04 23:00:00<br />
MINT RELEASE_URL ftp://mint.bio.uniroma2.it/pub/release/psi/current/psi25/pmids/<br />
MINT DOWNLOAD_FILES *.psi25.zip<br />
MPACT DATE 2008-09-30 22:00:00<br />
MPACT RELEASE_URL ftp://ftpmips.gsf.de/yeast/PPI/<br />
MPACT DOWNLOAD_FILES mpact-complete.psi25.xml.gz<br />
MPPI DATE 2004-06-01 15:37:37<br />
MPPI RELEASE_URL http://mips.gsf.de/proj/ppi/data/<br />
MPPI DOWNLOAD_FILES mppi.gz<br />
OPHID DATE 2013-01-14 10:33:18<br />
OPHID RELEASE_URL local archive of last release<br />
OPHID DOWNLOAD_FILES ophid*.xml<br />
INNATEDB DATE 2013-01-13 14:14:49<br />
INNATEDB RELEASE_URL http://www.innatedb.com/download/interactions/<br />
INNATEDB DOWNLOAD_FILES innatedb_all.mitab.gz<br />
MPIDB DATE 2013-01-14 04:24:36<br />
MPIDB RELEASE_URL http://www.jcvi.org/mpidb/download.php?dbsource=<br />
MPIDB DOWNLOAD_FILES MPI-IMEX MPI-LIT<br />
<br />
Other data sources<br />
<br />
PSI_MI DATE 2013-01-14 04:24:42<br />
PSI_MI RELEASE_URL http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/mi/rel25/data/<br />
PSI_MI DOWNLOAD_FILES psi-mi25.obo<br />
TAXONOMY DATE 2013-01-14 03:20:00<br />
TAXONOMY RELEASE_URL ftp://ftp.ncbi.nih.gov/pub/taxonomy/<br />
TAXONOMY DOWNLOAD_FILES taxdump.tar.gz<br />
DIG DATE 2013-01-14 10:34:17<br />
DIG RELEASE_URL file:///storage/localdata/DIG/<br />
DIG DOWNLOAD_FILES morbidmap14062010.txt<br />
FLY VERSION 2013_01<br />
FLY DATE 09-Jan-2013<br />
FLY RELEASE_URL http://www.uniprot.org/docs/<br />
FLY DOWNLOAD_FILES fly.txt<br />
GENE DATE 2013-01-13 04:10:00<br />
GENE RELEASE_URL ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/<br />
GENE DOWNLOAD_FILES gene2refseq.gz gene_info.gz gene2go.gz gene_history.gz<br />
IPI DATE 2012-07-20 15:07:00<br />
IPI RELEASE_URL ftp://ftp.ebi.ac.uk/pub/databases/IPI/current/<br />
IPI DOWNLOAD_FILES *.fasta.gz<br />
MMDB DATE 2013-01-10 14:03:00<br />
MMDB RELEASE_URL ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/<br />
MMDB DOWNLOAD_FILES table<br />
PDB DATE 2013-01-13 20:45:00<br />
PDB RELEASE_URL ftp://ftp.ncbi.nih.gov/blast/db/FASTA/<br />
PDB DOWNLOAD_FILES pdbaa.gz<br />
REFSEQ DATE 2012-11-09 22:31:00<br />
REFSEQ RELEASE_URL ftp://ftp.ncbi.nih.gov/refseq/release//complete/<br />
REFSEQ DOWNLOAD_FILES complete*.protein.gpff.gz<br />
UNIPROT VERSION 2013_01<br />
UNIPROT DATE 09-Jan-2013<br />
UNIPROT RELEASE_URL ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/<br />
UNIPROT DOWNLOAD_FILES uniprot_sprot.dat.gz uniprot_trembl.dat.gz uniprot_sprot_varsplic.fasta.gz reldate.txt<br />
YEAST VERSION 2013_01<br />
YEAST DATE 09-Jan-2013<br />
YEAST RELEASE_URL http://www.uniprot.org/docs/<br />
YEAST DOWNLOAD_FILES yeast.txt<br />
</pre><br />
<br />
<br />
== All iRefIndex Pages ==<br />
<br />
Follow this link for a listing of all iRefIndex related pages (archived and current).<br />
[[Category:iRefIndex]]</div>
Admin