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Sources iRefIndex 6.0 - Revision history
2024-03-29T02:36:57Z
Revision history for this page on the wiki
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Ian.donaldson: /* Sequence related resources */
2010-04-09T14:37:02Z
<p><span dir="auto"><span class="autocomment">Sequence related resources</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 14:37, 9 April 2010</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">== All iRefIndex Pages ==</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">Follow this link for a listing of all iRefIndex related pages (archived and current).</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:iRefIndex]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:iRefIndex]]</div></td></tr>
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Ian.donaldson
http://irefindex.vib.be/wiki/index.php?title=Sources_iRefIndex_6.0&diff=1936&oldid=prev
Sabry at 11:30, 28 December 2009
2009-12-28T11:30:10Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 11:30, 28 December 2009</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Applies to iRefIndex release: 6.0</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Applies to iRefIndex release: 6.0</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Release date: <del class="diffchange diffchange-inline">14th Dec </del>2009</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Release date: <ins class="diffchange diffchange-inline">27th Oct </ins>2009</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Authors: Ian Donaldson,Sabry Razick and Paul Boddie</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Authors: Ian Donaldson,Sabry Razick and Paul Boddie</div></td></tr>
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Sabry
http://irefindex.vib.be/wiki/index.php?title=Sources_iRefIndex_6.0&diff=1932&oldid=prev
Sabry at 10:05, 24 December 2009
2009-12-24T10:05:13Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 10:05, 24 December 2009</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l13" >Line 13:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>*For statistics on full public dataset please refer to: http://irefindex.uio.no/wiki/<del class="diffchange diffchange-inline">README_iRefIndex_MITAB_6</del>.0</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>*For statistics on full public dataset please refer to: http://irefindex.uio.no/wiki/<ins class="diffchange diffchange-inline">Statistics_iRefIndex_6</ins>.0</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*For statistics on the public dataset (distributed on the FTP site contains) please refer to:http://irefindex.uio.no/wiki/Statistics_iRefIndex_free_6.0 </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*For statistics on the public dataset (distributed on the FTP site contains) please refer to:http://irefindex.uio.no/wiki/Statistics_iRefIndex_free_6.0 </div></td></tr>
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Sabry
http://irefindex.vib.be/wiki/index.php?title=Sources_iRefIndex_6.0&diff=1931&oldid=prev
Sabry at 10:04, 24 December 2009
2009-12-24T10:04:34Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 10:04, 24 December 2009</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Applies to iRefIndex release: 6.0</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Applies to iRefIndex release: 6.0</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Release date: <del class="diffchange diffchange-inline"><To_be_announced></del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Release date: <ins class="diffchange diffchange-inline">14th Dec 2009</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Authors: Ian Donaldson,Sabry Razick and Paul Boddie</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Authors: Ian Donaldson,Sabry Razick and Paul Boddie</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>*For statistics on full public dataset please refer to: </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>*For statistics on full public dataset please refer to: <ins class="diffchange diffchange-inline">http://irefindex.uio.no/wiki/README_iRefIndex_MITAB_6.0</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>*For statistics on the public dataset (distributed on the FTP site contains) please refer to: </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>*For statistics on the public dataset (distributed on the FTP site contains) please refer to:<ins class="diffchange diffchange-inline">http://irefindex.uio.no/wiki/Statistics_iRefIndex_free_6.0 </ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Interaction related resources ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Interaction related resources ==</div></td></tr>
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Sabry
http://irefindex.vib.be/wiki/index.php?title=Sources_iRefIndex_6.0&diff=1746&oldid=prev
Sabry at 14:32, 6 October 2009
2009-10-06T14:32:45Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 14:32, 6 October 2009</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3" >Line 3:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Applies to iRefIndex release: 6.0</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Applies to iRefIndex release: 6.0</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Release date: </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Release date: <ins class="diffchange diffchange-inline"><To_be_announced></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Authors: Ian Donaldson,Sabry Razick and Paul Boddie</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Authors: Ian Donaldson,Sabry Razick and Paul Boddie</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
</table>
Sabry
http://irefindex.vib.be/wiki/index.php?title=Sources_iRefIndex_6.0&diff=1738&oldid=prev
Sabry: /* Sequence related resources */
2009-09-30T10:24:51Z
<p><span dir="auto"><span class="autocomment">Sequence related resources</span></span></p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 10:24, 30 September 2009</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l85" >Line 85:</td>
<td colspan="2" class="diff-lineno">Line 85:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>| UniProt||Text||http://www.uniprot.org/downloads<br>Download : 1.UniProtKB/Swiss-Prot (uniprot_sprot.dat.gz) 2.UniProtKB/TrEMBL (uniprot_trembl.dat.gz)||UniProt Release 15.3 (May 26th 2009)</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>| UniProt||Text||http://www.uniprot.org/downloads<br>Download : 1.UniProtKB/Swiss-Prot (uniprot_sprot.dat.gz) 2.UniProtKB/TrEMBL (uniprot_trembl.dat.gz)||UniProt Release 15.3 (May 26th 2009)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>| UniProt, IsoForms||FASTA||http://www.uniprot.org/downloads uniprot_sprot_varsplic.fasta.gz||Release 15.<del class="diffchange diffchange-inline">3 </del>(<del class="diffchange diffchange-inline">May 26th </del>2009)</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>| UniProt, IsoForms||FASTA||http://www.uniprot.org/downloads uniprot_sprot_varsplic.fasta.gz||Release 15.<ins class="diffchange diffchange-inline">5 </ins>(<ins class="diffchange diffchange-inline">July 07th </ins>2009)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>| UniProt, SGD||Tab-delimited text file.||http://www.expasy.org/cgi-bin/lists?yeast.txt Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD||Release:57.3 (May 26th 2009)</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>| UniProt, SGD||Tab-delimited text file.||http://www.expasy.org/cgi-bin/lists?yeast.txt Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD||Release:57.3 (May 26th 2009)</div></td></tr>
</table>
Sabry
http://irefindex.vib.be/wiki/index.php?title=Sources_iRefIndex_6.0&diff=1666&oldid=prev
Sabry: New page: Last edited:12th, September 2009 Applies to iRefIndex release: 6.0 Release date: Authors: Ian Donaldson,Sabry Razick and Paul Boddie Database: iRefIndex (http://irefindex.uio.no) Org...
2009-09-17T09:34:52Z
<p>New page: Last edited:12th, September 2009 Applies to iRefIndex release: 6.0 Release date: Authors: Ian Donaldson,Sabry Razick and Paul Boddie Database: iRefIndex (http://irefindex.uio.no) Org...</p>
<p><b>New page</b></p><div>Last edited:12th, September 2009<br />
<br />
Applies to iRefIndex release: 6.0<br />
<br />
Release date: <br />
Authors: Ian Donaldson,Sabry Razick and Paul Boddie<br />
<br />
Database: iRefIndex (http://irefindex.uio.no)<br />
<br />
Organization: Biotechnology Centre of Oslo, University of Oslo (http://www.biotek.uio.no/)<br />
<br />
Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex.<br />
Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.<br />
*For statistics on full public dataset please refer to: <br />
*For statistics on the public dataset (distributed on the FTP site contains) please refer to: <br />
<br />
== Interaction related resources ==<br />
<br />
{| {{table}}<br />
| align="center" style="background:#f0f0f0;"|'''Source'''<br />
| align="center" style="background:#f0f0f0;"|'''Format'''<br />
| align="center" style="background:#f0f0f0;"|'''Location'''<br />
| align="center" style="background:#f0f0f0;"|'''Version (date)'''<br />
|-<br />
| BIND,||Tab-delimited text file.||ftp://ftp.bind.ca/pub/BIND/data/bindflatfiles/bindindex/ <br />
<br />
20050525.complex2refs.txt <br />
<br />
20050525.ints.txt <br />
<br />
20050525.refs.txt <br />
<br />
20050525.complexes.txt <br />
<br />
20050525.labels.txt <br />
<br />
20050525.complex2subunits.txt <br />
<br />
These file are no longer available via ftp but are available from the authors. BIND archival content is now managed by Thomson Scientific. See http://bond.unleashedinformatics.com/ and http://bond.unleashedinformatics.com/downloads/data/BIND/ <br />
<br />
For historical purposes, a snapshot of the the Blueprint web-site may be viewed at...<br />
<br />
http://web.archive.org/web/20050204013426/www.blueprint.org/index.html<br />
<br />
...via the internet archive at...<br />
<br />
http://web.archive.org/web/*/http://www.blueprint.org<br />
<br />
||05/25/05<br />
|-<br />
| BioGRID||PSI-MI 2.5||http://www.thebiogrid.org/downloads/datasets/BIOGRID-ALL-SINGLEFILE-2.0.53.psi25.xml.gz ||Version 2.0.53 <br />
|-<br />
| DIP||PSI-MI 2.5||http://dip.doe-mbi.ucla.edu/dip/Download.cgi (dip20090126.mif25) ||January 26, 2009<br />
|-<br />
| HPRD,||PSI-MI 2.5||http://www.hprd.org/download/ (HPRD_SINGLE_PSIMI_070609.xml.tar.gz)||Release 8. July 06, 2009<br />
|-<br />
| IntAct,||PSI-MI 2.5||ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-06-19/psi25/ (pmidMIF25.zip)|| July 19, 2009<br />
|-<br />
| MINT||PSI-MI 2.5|| ftp://mint.bio.uniroma2.it/pub/release/psi/2009-07-28/psi25/pmid/|| July 28, 2009<br />
|-<br />
| MPACT||PSI-MI 2.5||ftp://ftpmips.gsf.de/yeast/PPI/ (mpact-complete.psi25.xml.gz) ||January 10, 2008 || <br />
|-<br />
| MPPI||PSI-MI 1.0||http://mips.gsf.de/proj/ppi/data/mppi.gz||Not available <br />
|-<br />
| OPHID||PSI-MI 1.0||http://ophid.utoronto.ca/ophid/downloads.html (This service no longer available, please refer to http://ophid.utoronto.ca/ophidv2.201/)||07/18/06 <br />
|-<br />
|-<br />
| CORUM||PSI-MI 2.5||http://mips.gsf.de/genre/proj/corum/index.html (http://mips.gsf.de/genre/export/sites/default/corum/allComplexes.psimi.zip) ||Not available (time stamp of file September 08 2008)<br />
|-<br />
| I2D||PSI-MI 2.5||http://ophid.utoronto.ca/ophidv2.201/downloads.jsp ||(Not included in this release)<br />
|-<br />
| <br />
|}<br />
<br />
== Sequence related resources ==<br />
<br />
{| {{table}}<br />
| align="center" style="background:#f0f0f0;"|'''Source'''<br />
| align="center" style="background:#f0f0f0;"|'''Format'''<br />
| align="center" style="background:#f0f0f0;"|'''Location'''<br />
| align="center" style="background:#f0f0f0;"|'''Version (date)'''<br />
|-<br />
| SEGUID||Tab-delimited text ||ftp://bioinformatics.anl.gov/seguid/ seguidannotation||September 23rd, 2008<br />
|-<br />
| UniProt||Text||http://www.uniprot.org/downloads<br>Download : 1.UniProtKB/Swiss-Prot (uniprot_sprot.dat.gz) 2.UniProtKB/TrEMBL (uniprot_trembl.dat.gz)||UniProt Release 15.3 (May 26th 2009)<br />
|-<br />
| UniProt, IsoForms||FASTA||http://www.uniprot.org/downloads uniprot_sprot_varsplic.fasta.gz||Release 15.3 (May 26th 2009)<br />
|-<br />
| UniProt, SGD||Tab-delimited text file.||http://www.expasy.org/cgi-bin/lists?yeast.txt Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD||Release:57.3 (May 26th 2009)<br />
|-<br />
| UniProt, FLY||Tab-delimited text file.||http://www.expasy.org/cgi-bin/lists?fly.txt Drosophila: entries, gene names and cross-references to FlyBase.||Release: 57.3 (May 26th 2009)<br />
|-<br />
| NCBI, RefSeq||GenPept||ftp://ftp.ncbi.nih.gov/refseq/release/complete see *.protein.gpff.gz files||Release 35 (May 4th, 2009)<br />
|-<br />
| NCBI, MMDB/PDB||Tab-delimited text ||ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/table|| (Downloaded on May 14th, 2009)<br />
|-<br />
| NCBI, PDB sequences||FASTA||ftp://ftp.ncbi.nih.gov/blast/db/FASTA/pdbaa.gz||(Downloaded on May 14th, 2009)<br />
|-<br />
| NCBI Gene2Refseq||Tab-delimited text||ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ gene2refseq.gz||(Downloaded on May 14th, 2009)<br />
|-<br />
| <br />
|}<br />
<br />
[[Category:iRefIndex]]</div>
Sabry