User contributions
From irefindex
- 10:57, 8 June 2010 diff hist +41 N File:iRefIndex-0.83-node-attributes-close-up-closed.png The location of the node attributes menu.
- 09:50, 2 June 2010 diff hist +8 m Plugin test cases 0.8 Fixed syntax to make query inputs clearer.
- 12:40, 21 May 2010 diff hist +1,219 Bioscape Issues and Tasks Added a task list.
- 12:26, 21 May 2010 diff hist +276 N iRefIndex Issues and Notes New page: This document describes ongoing work to improve the iRefIndex software. == Tasks == * Validation documentation * Fix/improve SaxValidator to automate troubleshooting * Write a top-level ...
- 12:24, 21 May 2010 diff hist +99 iRefIndex Development Added link to a new page.
- 17:19, 18 May 2010 diff hist +2 m README iRefIndex Feedback 7.0 Fixed syntax. current
- 17:17, 18 May 2010 diff hist +2 m README iRefIndex MITAB experiment proposal for 7.0 →Changes from last version: Formatting changes.
- 17:16, 18 May 2010 diff hist +2 m README iRefIndex MITAB 7.0 →Changes from last version: Formatting changes. current
- 17:15, 18 May 2010 diff hist +51 Statistics iRefIndex 7.0 →Summary: Changed last updated date.
- 15:34, 14 May 2010 diff hist +595 Bioscape Configuration →Bioscape: Updated the configuration script instructions.
- 13:03, 28 April 2010 diff hist +1,663 iRefIndex Maintenance Added some recommendations.
- 17:18, 27 April 2010 diff hist +235 iRefIndex Maintenance Restructured somewhat, added remark about non-existent alternatives.
- 17:14, 26 April 2010 diff hist +419 iRefIndex Maintenance Added XtraBackup notes.
- 14:21, 26 April 2010 diff hist +359 iRefIndex Maintenance →Moving Tables into Separate Table Files: Added conclusion about the table optimisation approach.
- 13:36, 26 April 2010 diff hist +416 iRefIndex Maintenance →Moving Tables into Separate Table Files: Added notes about the outcome of table optimisation.
- 11:58, 23 April 2010 diff hist +1,255 iRefIndex Maintenance Added table moving notes.
- 14:24, 21 April 2010 diff hist +232 Bioscape Configuration →Web Interface: Moved preparation script, added system package notes.
- 12:20, 21 April 2010 diff hist +3,768 N Bioscape Configuration Moved from the installation page, removing the database configuration section (now redundant).
- 12:19, 21 April 2010 diff hist -3,889 Bioscape Installation Moved configuration information to another page.
- 12:19, 21 April 2010 diff hist +29 Bioscape Manual Added new page.
- 10:51, 20 April 2010 diff hist +296 iRefIndex Maintenance →Dumping and Restoring Databases: Added background-capable commands.
- 10:06, 20 April 2010 diff hist +843 iRefIndex Maintenance Added dump/restore recommendations.
- 16:51, 16 April 2010 diff hist -3 Bioscape Installation →Quick Start: Fixed command options.
- 16:44, 16 April 2010 diff hist +804 Bioscape Installation →PostgreSQL: Added notes about encoding/locale issues and cluster reinitialisation.
- 13:24, 29 March 2010 diff hist +4,774 N Sources iRefIndex 7.0 Initial version for 7.0.
- 13:19, 29 March 2010 diff hist +64 Sources and Issues Next Release Added variable usage for the last edited date.
- 17:47, 26 March 2010 diff hist +751 Bioscape Result Assessment →Comparing BioCreative Results and Bioscape Results: Added ambiguity result set notes.
- 19:07, 23 March 2010 diff hist +2,512 iRefIndex MITAB2.5 Parser Added schema description.
- 18:35, 23 March 2010 diff hist +11 iRefIndex MITAB2.5 Parser →Creating the Database: Using preferred option to create the database.
- 18:24, 23 March 2010 diff hist +9 README iRefIndex MITAB 7.0 →Column number: 1 (uidA): ROGID of complex is RIGID.
- 18:20, 23 March 2010 diff hist +19 README iRefIndex MITAB 7.0 →Column number: 1 (uidA): Changed the wording slightly, reformatted.
- 17:05, 23 March 2010 diff hist +114 README iRefIndex MITAB 7.0 →Column number: 14 (interactionIdentifiers): Changed example to include an iRefIndex identifier.
- 15:03, 23 March 2010 diff hist -67 README iRefIndex MITAB 7.0 →Column number: 14 (interactionIdentifiers): Changed FOUND to - for unavailable identifiers.
- 12:01, 23 March 2010 diff hist +28,869 N README iRefIndex MITAB 7.0 Initial version for 7.0.
- 16:54, 19 March 2010 diff hist +78 README iRefIndex MITAB 6.1 →Understanding the iRefIndex MITAB format: Added full text link.
- 17:24, 18 March 2010 diff hist +82 iRefIndex Maintenance Added another solution link.
- 14:47, 18 March 2010 diff hist +449 README iRefIndex MITAB 6.1 →Understanding the iRefIndex MITAB format: Added column summary table.
- 14:48, 16 March 2010 diff hist +144 iRefIndex Output and Statistics →Running PSI_MI_TAB_Maker: Added note about table preparation.
- 14:11, 15 March 2010 diff hist +41 Bioscape Result Assessment →Isolating Correct and Incorrect Bioscape Results: Added true positive distinctions.
- 19:17, 10 March 2010 diff hist +3,089 Bioscape Result Assessment Added BioCreative import details.
- 14:14, 10 March 2010 diff hist +95 iRefIndex Output and Statistics →Running BioPSI_Suplimenter to Produce Statistics: Added note about this step being optional for a completed build process.
- 16:32, 9 March 2010 diff hist +374 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Added note about propagating data from the full version when building the free version.
- 16:24, 9 March 2010 diff hist +207 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Added workaround.
- 15:54, 9 March 2010 diff hist +13,474 N Statistics iRefIndex free 7.0 Tentative statistics export.
- 11:56, 9 March 2010 diff hist -341 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Simplified Eutils advice.
- 14:57, 1 March 2010 diff hist +70 iRefIndex Build Process →BioGrid: Used a generic filename.
- 11:47, 1 March 2010 diff hist -9 iRefIndex Build Process →BioGrid: Changed ORGANISM to ALL.
- 18:48, 25 February 2010 diff hist +1,016 Bioscape Methods Added filtering and scoring notes.
- 14:01, 25 February 2010 diff hist +1,449 iRefIndex Build Process Added post-parsing validation measures, notes about free/excluded data sources. Removed CORUM preprocessing note.
- 12:44, 25 February 2010 diff hist +53 iRefIndex Build Process →Manual loading of data: Tidied formatting.
- 14:31, 22 February 2010 diff hist +273 iRefIndex Build Process →Running SaxValidator: Added notes about invalid files.
- 19:42, 18 February 2010 diff hist -688 iRefIndex Build Process →Running StaxPSIXML: The CORUM-specific fix does not seem to be necessary on the recently downloaded file.
- 18:11, 18 February 2010 diff hist 0 m iRefIndex Build Process Changed dates and date formats.
- 14:17, 18 February 2010 diff hist +427 iRefIndex Build Process →Fill Bind info: Added notes about the "Base loc" and "Date info" fields.
- 14:03, 18 February 2010 diff hist +579 iRefIndex Build Process →Manual Downloads: Added notes about BIND Translation.
- 16:40, 17 February 2010 diff hist +802 iRefIndex Build Process Added build instructions. Made separate build/running sections.
- 16:22, 17 February 2010 diff hist +1 iRefIndex Build Process →Validation and integrity checks: Changed formatting and date format.
- 14:04, 17 February 2010 diff hist +288 Text Mining Resources Added NLTK-related resources, Wikipedia pronoun page link. current
- 13:59, 17 February 2010 diff hist +1,480 N iRefIndex Maintenance Added a page about maintenance issues.
- 13:41, 17 February 2010 diff hist +28 iRefIndex Manual Added link to a new page.
- 16:55, 16 February 2010 diff hist 0 iRefIndex Release Process Moved feedback section.
- 15:29, 16 February 2010 diff hist -5 iRefIndex Build Process →Building SHA: Changed output directory.
- 16:22, 12 February 2010 diff hist +896 Bioscape Tokenisation →Adopting "Lossy" Tokenisation: Added notes on suitable filtering of tokens.
- 15:30, 12 February 2010 diff hist +1,461 Bioscape Tokenisation Added more details of the different potential tokenisation approaches.
- 18:51, 11 February 2010 diff hist +16 Sources and Issues Next Release →Interaction related resources: Fixed/added dates.
- 14:51, 11 February 2010 diff hist +25 Sources and Issues Next Release →Interaction related resources: Updated versions and dates.
- 14:14, 11 February 2010 diff hist +118 Sources and Issues Next Release →Sequence related resources: Updated versions and dates.
- 14:39, 10 February 2010 diff hist +468 Bioscape Searching →Selecting Search Resources: Added a note about stop word-based terms.
- 18:23, 9 February 2010 diff hist +68 iRefIndex Build Process →Downloading the Source Data: Adjustments to the source lists.
- 12:33, 9 February 2010 diff hist +3 iRefIndex Build Process →DIP: Fixed filename.
- 18:49, 8 February 2010 diff hist 0 iRefIndex Build Process →MIPS: Fixed pathname in example.
- 17:30, 8 February 2010 diff hist +52 iRefIndex Build Process →OPHID: Added deprecation note.
- 17:29, 8 February 2010 diff hist -97 iRefIndex Build Process →I2D: Fixed commands for specific filename details.
- 17:11, 8 February 2010 diff hist +674 iRefIndex Build Process →Manual Downloads: Added I2D section.
- 15:21, 8 February 2010 diff hist +124 Text Mining Resources
- 12:29, 4 February 2010 diff hist +115 Text Mining Resources
- 19:27, 29 January 2010 diff hist +234 Text Mining Resources
- 19:24, 29 January 2010 diff hist +368 Text Mining Resources
- 16:56, 26 January 2010 diff hist +1,232 N Displaying Bioscape Search Results Initial notes.
- 16:45, 26 January 2010 diff hist +42 Bioscape Manual Added link to a new page.
- 13:15, 26 January 2010 diff hist -260 iRefIndex Build Process Updated the instructions, removed FTPtransfer modification step, added data directory argument.
- 10:51, 26 January 2010 diff hist -14 m README iRefIndex expanded MITAB proposal →Understanding the iRefIndex MITAB format: Fixed formatting, or at least prevented weird list construction.
- 18:23, 21 January 2010 diff hist +827 Bioscape Web Resources Added templates.
- 16:15, 21 January 2010 diff hist +674 iRefScape 0.6 Added font rendering tip, distribution package details.
- 13:53, 21 January 2010 diff hist +290 Text Mining Resources →Text Search Resources: Added PMC open access resource information.
- 13:47, 21 January 2010 diff hist +133 Text Mining Resources →Text Search Resources: Added BioMed Central information.
- 16:20, 20 January 2010 diff hist +28 iRefScape 0.6 →Windows Vista and Windows XP: Minor formatting changes.
- 14:50, 20 January 2010 diff hist +114 iRefScape 0.6 →Usage: Added dialogues. Reordered sections, introducing advanced mode first.
- 13:47, 20 January 2010 diff hist 0 File:IRefIndex-Cytoscape-Advanced.png uploaded a new version of "Image:IRefIndex-Cytoscape-Advanced.png": The iRefIndex plugin panel in advanced mode. current
- 13:46, 20 January 2010 diff hist +44 N File:IRefIndex-Cytoscape-Advanced.png The iRefIndex plugin panel in advanced mode.
- 13:41, 20 January 2010 diff hist +216 iRefScape 0.6 →Usage: Moved images around, edited the wording.
- 13:18, 20 January 2010 diff hist +355 iRefScape 0.6 →Usage: Added dialogues.
- 12:59, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step5.png Step 5 of the iRefIndex plugin wizard. current
- 12:59, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step4.png Step 4 of the iRefIndex plugin wizard. current
- 12:58, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step3.png Step 3 of the iRefIndex plugin wizard. current
- 12:57, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step2.png Step 2 of the iRefIndex plugin wizard. current
- 12:55, 20 January 2010 diff hist +37 N File:IRefIndex-Cytoscape-Wizard.png The iRefIndex plugin wizard dialogue. current
- 12:53, 20 January 2010 diff hist +57 iRefScape 0.6 Added breaks in the formatting. Moved some images around. Minor edits.
- 12:43, 20 January 2010 diff hist +265 iRefScape 0.6 →Completing the installation: Added dialogues.
- 12:42, 20 January 2010 diff hist 0 File:IRefIndex-Cytoscape-Success.png uploaded a new version of "Image:IRefIndex-Cytoscape-Success.png": A successful iRefIndex plugin installation. current
- 12:39, 20 January 2010 diff hist +50 N File:IRefIndex-Cytoscape-Success.png A successful installation of the iRefIndex plugin.
- 12:36, 20 January 2010 diff hist +39 N File:IRefIndex-Cytoscape-Download.png The iRefIndex plugin download dialogue. current
- 12:35, 20 January 2010 diff hist +44 N File:IRefIndex-Cytoscape-Location.png The iRefIndex plugin data location dialogue. current
- 12:32, 20 January 2010 diff hist +249 iRefScape 0.6 →Using Cytoscape plugin manager: Added dialogues.
- 12:28, 20 January 2010 diff hist +40 N File:IRefIndex-Cytoscape-Bookmark-manager.png The Cytoscape Bookmark manager dialogue. current
- 12:28, 20 January 2010 diff hist +45 N File:IRefIndex-Cytoscape-Plugin-Download-Sites.png The Cytoscape Plugin Download Sites dialogue. current
- 12:27, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Manage-Plugins.png The Cytoscape Manage Plugins dialogue. current
- 12:23, 20 January 2010 diff hist +312 iRefScape 0.6 →Using Cytoscape plugin manager: Added uninstall notes.
- 12:24, 19 January 2010 diff hist +279 Text Mining Resources
- 16:31, 18 January 2010 diff hist +164 Text Mining Resources
- 19:48, 18 December 2009 diff hist +1,259 Bioscape Tokenisation Added gene keyword-related note.
- 18:05, 16 December 2009 diff hist +867 Bioscape Scoring Techniques →Assuming the Presence of Gene Symbols: Added gene summary-related example.
- 17:58, 16 December 2009 diff hist +1,039 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Added awkward acronym detection case.
- 17:43, 16 December 2009 diff hist +935 Bioscape Scoring Techniques Added example involving gene symbol assertions.
- 15:26, 15 December 2009 diff hist +43 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Moved example and tagged it with a method.
- 15:31, 14 December 2009 diff hist +1,275 Bioscape Scoring Techniques Added disqualifier-related techniques.
- 14:20, 14 December 2009 diff hist +1,129 Bioscape Scoring Techniques Added an example of parentheses-related scoring.
- 14:05, 14 December 2009 diff hist +1,123 Bioscape Searching Techniques →Bioentity Inference: Added another example.
- 13:56, 14 December 2009 diff hist +94 Bioscape Scoring Techniques →PubMed #7512734: Updated the example given newer results.
- 13:51, 14 December 2009 diff hist +2,550 Bioscape Searching Techniques Added more examples.
- 13:33, 14 December 2009 diff hist +689 Bioscape Searching Techniques Added bioentity-specific example.
- 17:20, 9 December 2009 diff hist +474 N Bioinformatics Data Resources New page: * [http://jura.wi.mit.edu/entrez_gene/entrezgene.html Entrez Gene Database Description and Files] - scripts and a schema for parsing Entrez Gene data and populating a database * [http://en... current
- 16:13, 9 December 2009 diff hist +36 Bioscape Manual Added new document.
- 16:13, 9 December 2009 diff hist +1,198 N DiG: Disease groups/Bioscape Notes New page: Some notes related to disease groups and Bioscape. ---- Possible MeSH terms: * Fanconi Anemia Search for FANCD2 and "Fanconi Anemia": * [http://bioscape.uio.no/cgi-bin/bsweb.cgi/quali...
- 17:50, 7 December 2009 diff hist +436 Bioscape Tokenisation Added example issue.
- 19:31, 4 December 2009 diff hist +2,370 Bioscape Searching Techniques Added possible synonym definition technique.
- 18:36, 4 December 2009 diff hist +1,697 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Added disambiguation techniques.
- 16:05, 4 December 2009 diff hist +11 m Bioscape Searching Techniques →PubMed #10484778: Fixed quoted text in table.
- 17:59, 3 December 2009 diff hist +1,470 Bioscape Searching Techniques Added more examples.
- 17:41, 3 December 2009 diff hist +37 Bioscape Manual Added link to new page.
- 17:41, 3 December 2009 diff hist +3,359 N Bioscape Searching Techniques New page: A number of searching techniques are applied to find textual mentions of entities or concepts, particularly those where the nature of the searching is speculative, meaning that no predefin...
- 15:07, 3 December 2009 diff hist 0 m Bioscape Manual Moved development link.
- 15:18, 2 December 2009 diff hist +136 Bioscape Development →Adding New Search Result Types: Added Web translations note.
- 15:05, 2 December 2009 diff hist +176 Bioscape Development →Adding New Search Result Types: Added database template note.
- 09:00, 2 December 2009 diff hist +101 Bioscape Scoring Techniques Added missing suggestions.
- 16:33, 1 December 2009 diff hist +3,374 Bioscape Scoring Techniques Added more examples.
- 13:28, 26 November 2009 diff hist +3,794 Bioscape Scoring Techniques Added some acronym mention techniques.
- 15:42, 24 November 2009 diff hist +762 Bioscape Scoring Techniques Added chromosome information correspondence.
- 16:41, 23 November 2009 diff hist +1,664 Bioscape Scoring Techniques Added Gene Ontology-related techniques.
- 13:29, 23 November 2009 diff hist +2,974 Bioscape Scoring Techniques Added more examples.
- 12:55, 23 November 2009 diff hist -127 Bioscape Methods Replaced section, linking to a more comprehensive document.
- 12:54, 23 November 2009 diff hist +2,093 N Bioscape Scoring Techniques Started a collection of scoring techniques.
- 12:31, 23 November 2009 diff hist +94 Bioscape Manual Added missing links plus new document.
- 12:29, 23 November 2009 diff hist +42 Bioscape Workflow Added links to methods/scoring documentation.
- 17:07, 17 November 2009 diff hist +1,435 N Bioscape Result Assessment New page: The suggestions produced by Bioscape's search activities can be assessed subject to the availability of "gold standard" data which confirms whether each particular result can be regarded a...
- 13:24, 17 November 2009 diff hist +33 Bioscape Manual Added link to new page.
- 18:29, 16 November 2009 diff hist 0 File:Bioscape-advanced-search-dialogue.png uploaded a new version of "Image:Bioscape-advanced-search-dialogue.png": The Bioscape advanced search dialogue. current
- 18:26, 16 November 2009 diff hist +440 Using the Bioscape Web Application →Gene Summaries: Added ad-hoc details. current
- 18:25, 16 November 2009 diff hist +46 N File:Bioscape-gene-summary-adhoc-detail.png Qualifier details for a Bioscape gene summary. current
- 18:21, 16 November 2009 diff hist +75 N File:Bioscape-gene-summary-adhoc.png The Bioscape gene summary with a qualifier term used to filter the results. current
- 18:16, 16 November 2009 diff hist 0 File:Bioscape-gene-summary.png uploaded a new version of "Image:Bioscape-gene-summary.png": The Bioscape gene summary. current
- 18:16, 16 November 2009 diff hist 0 File:Bioscape-search-disambiguation-dialogue.png uploaded a new version of "Image:Bioscape-search-disambiguation-dialogue.png": The Bioscape search disambiguation dialogue. current
- 18:14, 16 November 2009 diff hist +1,409 Using the Bioscape Web Application →Searching: Updated search dialogue, added ad-hoc field description.
- 17:54, 16 November 2009 diff hist +59 N File:Bioscape-search-dialogue-adhoc.png The Bioscape search dialogue with ad-hoc search facilities. current
- 20:29, 13 November 2009 diff hist +3,142 Bioscape Workflow Added labelling and data hierarchy notes.
- 20:07, 13 November 2009 diff hist +410 N Supported Data Sources Incomplete draft.
- 19:45, 13 November 2009 diff hist +129 Bioscape Data Sources Added link to new page.
- 19:18, 11 November 2009 diff hist +659 Bioscape Tokenisation
- 15:03, 11 November 2009 diff hist +1,423 N Bioscape Tokenisation Initial notes.
- 14:52, 11 November 2009 diff hist +163 Bioscape Searching →Tokenisation: Added link to new page.
- 14:48, 11 November 2009 diff hist +61 Bioscape Indexing Qualified the B-tree remarks.
- 17:47, 6 November 2009 diff hist +716 Bioscape Searching →Phrases and Validation: Added validation example.
- 13:03, 6 November 2009 diff hist +1,612 Bioscape Data Sources Added export and extraction notes, overview.
- 12:51, 6 November 2009 diff hist +908 Bioscape Searching Added reading and writing notes.
- 15:39, 5 November 2009 diff hist +1,496 Bioscape Searching →Locating Matches: Added the start of the description of phrases and validation.
- 15:04, 5 November 2009 diff hist +552 Bioscape Searching Modified locator tasks.
- 14:57, 5 November 2009 diff hist +2,126 Bioscape Searching Added derived term generation description, variation generation summary. Reordered sections.
- 14:04, 5 November 2009 diff hist +1,271 Bioscape Searching Added overview/workflow diagrams.
- 19:20, 4 November 2009 diff hist +1,812 Bioscape Searching →Variations within Search Terms: Added a description of the variation mechanisms.
- 17:36, 4 November 2009 diff hist +609 Bioscape Searching →Search Overview: Added speculative search diagram and description.
- 14:04, 3 November 2009 diff hist +1,065 Bioscape Searching Added overview/workflow.
- 13:23, 30 October 2009 diff hist +1 Bioscape Indexing Updated Lucene format link, fixed wording.
- 12:59, 30 October 2009 diff hist +493 Bioscape Indexing Added indexing solution file format references.
- 13:20, 29 October 2009 diff hist +1,746 Bioscape Indexing Added identifier conversion notes.
- 13:45, 27 October 2009 diff hist +98 Text Indexing Resources Added Tokyo Dystopia. current
- 13:43, 26 October 2009 diff hist +10,581 iRefIndex/PBR Notes Added explanatory queries, details. Moved observations to the top. current
- 11:00, 26 October 2009 diff hist +22 iRefIndex/PBR Notes →Observations: Fixed first observation: "BIND identifiers" -> "distinct human interaction identifiers".
- 17:35, 23 October 2009 diff hist -72 MediaWiki:CustomEditTemplates The CustomEdit extension seems too restrictive for our purposes. current
- 15:49, 23 October 2009 diff hist +2,805 N Bioscape Data Types New page: Bioscape is aware of a number of different data types, focusing mostly on the notion of a bioentity, but handling that and other kinds of data. These data types are defined in the <tt>bios...
- 15:27, 23 October 2009 diff hist +26 Bioscape Manual Added link to a new page.
- 13:00, 23 October 2009 diff hist +98 Nm UNTITLED Dummy article created for Simple Forms extension current
- 12:29, 23 October 2009 diff hist +72 N MediaWiki:CustomEditTemplates New page: * Template:BioinformaticsPerson - used to edit bioinformatics people
- 16:34, 22 October 2009 diff hist +2,454 iRefIndex/PBR Notes →Retrieving BIND Identifiers: Added query for identifiers without considering interactions.
- 17:59, 21 October 2009 diff hist +596 Bioscape Searching Added section.
- 13:07, 21 October 2009 diff hist +407 Bioscape Indexing →Efficient access to index storage: Added a note about the retrieval of complete result sets.
- 12:14, 21 October 2009 diff hist +2,119 Bioscape Indexing →Convenient access to document identifiers: Added an example of the genuine identifier retrieval problem.
- 17:37, 20 October 2009 diff hist +260 m Bioscape Methods Changed formatting of tables.
- 17:33, 20 October 2009 diff hist -16 m Bioscape Web Resources Changed formatting of tables.
- 17:32, 20 October 2009 diff hist -539 m Bioscape Methods Changed formatting of tables.
- 17:30, 20 October 2009 diff hist +16 m Bioscape Web Resources Changed formatting of tables.
- 17:28, 20 October 2009 diff hist +760 m Bioscape Methods Formatting changes to tables.
- 17:28, 19 October 2009 diff hist +242 Text Indexing Resources Added link, category.
- 17:13, 19 October 2009 diff hist +112 Bioscape Manual Made a separate topics list for development, adding links to various new and related pages.
- 17:12, 19 October 2009 diff hist +149 Text Mining Resources Added link to summary. Added category.
- 17:10, 19 October 2009 diff hist +181 Bioscape Indexing Added link to new page.
- 17:06, 19 October 2009 diff hist +1,011 Text Indexing Resources
- 15:52, 19 October 2009 diff hist +2,176 N Text Indexing Resources New page: A considerable number of text indexing solutions exist. This document discusses some of the more widely-known open source solutions. * [http://www.htdig.org/ ht://Dig] - ''a search engine...
- 11:57, 19 October 2009 diff hist +564 Bioscape Searching →Locating Matches: Added a brief description of locators, sources and phrases.
- 12:04, 16 October 2009 diff hist +2,025 N Bioscape Web Resources A description of the bsweb package organisation.
- 11:44, 16 October 2009 diff hist +29 Bioscape Manual Added new document.
- 16:03, 15 October 2009 diff hist +786 Text Mining Resources →Text Search Resources: Added MEDIE.
- 15:37, 15 October 2009 diff hist +1,627 Text Mining Resources →Notes from the Text Mining Tutorial at EBI: Added more resources with separate lists for different resource types.
- 12:51, 15 October 2009 diff hist +3,319 Text Mining Resources Initial notes.
- 10:50, 9 October 2009 diff hist +276 Text Mining Resources Added FreeLing and NLTK.
- 12:55, 2 October 2009 diff hist +1,616 iRefIndex/PBR Notes →Retrieving BIND Identifiers: Added queries for interaction identifiers, clarifying what the existing queries actually retrieve.
- 11:51, 2 October 2009 diff hist +28 Bioscape Manual Added link to data sources page.
- 11:50, 2 October 2009 diff hist +26 Bioscape Distribution →Data Sources: Added link.
- 11:49, 2 October 2009 diff hist +23 m Bioscape Workflow Added category.
- 11:48, 2 October 2009 diff hist +1,845 N Bioscape Workflow Added workflow information.
- 11:16, 2 October 2009 diff hist +24 Bioscape Manual Added link to new page.
- 17:20, 1 October 2009 diff hist +4,835 N Bioscape Data Sources Initial version of data sources documentation.
- 16:21, 29 September 2009 diff hist +102 Bioscape Development →Adding New Data Sources and Types: Added link to new document.
- 11:44, 28 September 2009 diff hist +86 m iRefIndex/PBR Notes →Results: Added table borders.
- 11:43, 28 September 2009 diff hist +43 m iRefIndex/PBR Notes →Observations: Added table border.
- 18:52, 25 September 2009 diff hist +105 iRefIndex/PBR Notes →Observations: Added bug link.
- 18:46, 25 September 2009 diff hist +20 iRefIndex/PBR Notes →Observations: Clarified identifier 100771 occurrence.
- 18:38, 25 September 2009 diff hist +78 iRefIndex/PBR Notes →Observations: Formatting edits.
- 16:26, 25 September 2009 diff hist +6,480 iRefIndex/PBR Notes →Queries: Added BIND identifier extraction.
- 15:19, 25 September 2009 diff hist +1,503 N Text Mining Resources New page: Some notes on open source text mining resources: * "The Text Mining Tool Evaluation project will describe the process of text mining, identify non-proprietary software that can search blo...
- 15:37, 24 September 2009 diff hist +223 iRefIndex Output and Statistics →Building PSI_MI_TAB_Maker: Added SHA dependency, library version note.
- 11:45, 23 September 2009 diff hist +465 Bioscape Indexing Added filtered index notes.
- 15:47, 22 September 2009 diff hist +22 m Bioscape Searching →Text Indexing: Added link.
- 15:46, 22 September 2009 diff hist +971 N Bioscape Indexing Initial notes.
- 14:43, 22 September 2009 diff hist +23 m Bioscape Dependencies Added category.
- 14:43, 22 September 2009 diff hist +1 m Bioscape Methods →Processing, Methods and Scoring: Tidying.
- 14:42, 22 September 2009 diff hist +23 Bioscape Status 2009 current
- 11:56, 22 September 2009 diff hist +578 N Bioscape Status 2009 New page: Some notes about the status of Bioscape in September 2009. == Changes Since 2008 == * Reorganised the code base and database schema to better support a wider range of data types in a con...
- 16:21, 21 September 2009 diff hist 0 Bioscape Methods →Result Scoring Techniques: Moved heading.
- 16:20, 21 September 2009 diff hist +1,332 Bioscape Methods →Result Scoring: Added currently used methods.
- 16:12, 21 September 2009 diff hist +932 Bioscape Methods →Sentence Scoring: Added a brief description.
- 16:05, 21 September 2009 diff hist +962 Bioscape Methods →Search Scoring: Added brief description.
- 15:55, 21 September 2009 diff hist +225 Bioscape Methods →Term Scoring: Added filtering note.
- 15:47, 21 September 2009 diff hist +1,087 Bioscape Methods →Term Scoring: Added currently used methods.
- 14:30, 21 September 2009 diff hist +1,788 iRefIndex/PBR Notes Restricted interactors to 9606 for the "human" BIND PSI-XML data.
- 13:51, 21 September 2009 diff hist +1 iRefIndex/PBR Notes →Results: Restricted to 9606 interactors.
- 13:48, 21 September 2009 diff hist -7 iRefIndex/PBR Notes →Queries: Fixed query.
- 13:41, 21 September 2009 diff hist +1,706 iRefIndex/PBR Notes →Queries: Restrict to 9606 interactors.
- 12:18, 21 September 2009 diff hist +1,435 iRefIndex/PBR Notes Added interactors.
- 11:02, 21 September 2009 diff hist +774 iRefIndex/PBR Notes
- 10:34, 21 September 2009 diff hist +889 N iRefIndex/PBR Notes New page: Importing MITAB output from the iRefIndex 5.1 build and a build done using the BIND PSI-XML data, then comparing the interaction details for BIND, the following distribution is observed: ...
- 11:38, 15 September 2009 diff hist +4 m iRefIndex Release Process →Testing the Output: Fixed formatting.
- 17:02, 14 September 2009 diff hist +385 iRefIndex/PBR Next attempt. current
- 16:01, 10 September 2009 diff hist +7,710 N iRefIndex/PBR New page: == Interactions == {| | BIND||9645 |- | BIOGRID||0 || 0 |- | DIP||0 || 0 || 0 |- | HPRD||0 || 0 || 0 || 0 |- | INTACT||0 || 0 || 0 || 0 || 0 |- | MINT||0 || 0 || 0 || 0 || 0...
- 15:59, 9 September 2009 diff hist +181 iRefIndex Build Process →Running StaxPSIXML: Added link to the development documentation.
- 15:20, 9 September 2009 diff hist +352 iRefIndex Build Process →Building StaxPSIXML: Added library version notes.
- 16:05, 4 September 2009 diff hist +364 iRefIndex Build Process →Building BioPSI_Suplimenter: Added MySQL Connector/J version notes.
- 15:51, 4 September 2009 diff hist -5 iRefIndex Build Process →Building BioPSI_Suplimenter: The SHA build file seems to use the dist directory now.
- 15:35, 20 August 2009 diff hist +628 Bioscape Searching →Variations within Search Terms: Added initial example, some description.
- 14:50, 20 August 2009 diff hist +950 Bioscape Searching →Matching Strategies: Added examples.
- 14:15, 20 August 2009 diff hist +46 Bioscape Searching →Tokenisation: Added space around table and changed the preceding text.