User contributions
From irefindex
- 16:15, 21 January 2010 diff hist +674 iRefScape 0.6 Added font rendering tip, distribution package details.
- 13:53, 21 January 2010 diff hist +290 Text Mining Resources →Text Search Resources: Added PMC open access resource information.
- 13:47, 21 January 2010 diff hist +133 Text Mining Resources →Text Search Resources: Added BioMed Central information.
- 16:20, 20 January 2010 diff hist +28 iRefScape 0.6 →Windows Vista and Windows XP: Minor formatting changes.
- 14:50, 20 January 2010 diff hist +114 iRefScape 0.6 →Usage: Added dialogues. Reordered sections, introducing advanced mode first.
- 13:47, 20 January 2010 diff hist 0 File:IRefIndex-Cytoscape-Advanced.png uploaded a new version of "Image:IRefIndex-Cytoscape-Advanced.png": The iRefIndex plugin panel in advanced mode. current
- 13:46, 20 January 2010 diff hist +44 N File:IRefIndex-Cytoscape-Advanced.png The iRefIndex plugin panel in advanced mode.
- 13:41, 20 January 2010 diff hist +216 iRefScape 0.6 →Usage: Moved images around, edited the wording.
- 13:18, 20 January 2010 diff hist +355 iRefScape 0.6 →Usage: Added dialogues.
- 12:59, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step5.png Step 5 of the iRefIndex plugin wizard. current
- 12:59, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step4.png Step 4 of the iRefIndex plugin wizard. current
- 12:58, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step3.png Step 3 of the iRefIndex plugin wizard. current
- 12:57, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step2.png Step 2 of the iRefIndex plugin wizard. current
- 12:55, 20 January 2010 diff hist +37 N File:IRefIndex-Cytoscape-Wizard.png The iRefIndex plugin wizard dialogue. current
- 12:53, 20 January 2010 diff hist +57 iRefScape 0.6 Added breaks in the formatting. Moved some images around. Minor edits.
- 12:43, 20 January 2010 diff hist +265 iRefScape 0.6 →Completing the installation: Added dialogues.
- 12:42, 20 January 2010 diff hist 0 File:IRefIndex-Cytoscape-Success.png uploaded a new version of "Image:IRefIndex-Cytoscape-Success.png": A successful iRefIndex plugin installation. current
- 12:39, 20 January 2010 diff hist +50 N File:IRefIndex-Cytoscape-Success.png A successful installation of the iRefIndex plugin.
- 12:36, 20 January 2010 diff hist +39 N File:IRefIndex-Cytoscape-Download.png The iRefIndex plugin download dialogue. current
- 12:35, 20 January 2010 diff hist +44 N File:IRefIndex-Cytoscape-Location.png The iRefIndex plugin data location dialogue. current
- 12:32, 20 January 2010 diff hist +249 iRefScape 0.6 →Using Cytoscape plugin manager: Added dialogues.
- 12:28, 20 January 2010 diff hist +40 N File:IRefIndex-Cytoscape-Bookmark-manager.png The Cytoscape Bookmark manager dialogue. current
- 12:28, 20 January 2010 diff hist +45 N File:IRefIndex-Cytoscape-Plugin-Download-Sites.png The Cytoscape Plugin Download Sites dialogue. current
- 12:27, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Manage-Plugins.png The Cytoscape Manage Plugins dialogue. current
- 12:23, 20 January 2010 diff hist +312 iRefScape 0.6 →Using Cytoscape plugin manager: Added uninstall notes.
- 12:24, 19 January 2010 diff hist +279 Text Mining Resources
- 16:31, 18 January 2010 diff hist +164 Text Mining Resources
- 19:48, 18 December 2009 diff hist +1,259 Bioscape Tokenisation Added gene keyword-related note.
- 18:05, 16 December 2009 diff hist +867 Bioscape Scoring Techniques →Assuming the Presence of Gene Symbols: Added gene summary-related example.
- 17:58, 16 December 2009 diff hist +1,039 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Added awkward acronym detection case.
- 17:43, 16 December 2009 diff hist +935 Bioscape Scoring Techniques Added example involving gene symbol assertions.
- 15:26, 15 December 2009 diff hist +43 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Moved example and tagged it with a method.
- 15:31, 14 December 2009 diff hist +1,275 Bioscape Scoring Techniques Added disqualifier-related techniques.
- 14:20, 14 December 2009 diff hist +1,129 Bioscape Scoring Techniques Added an example of parentheses-related scoring.
- 14:05, 14 December 2009 diff hist +1,123 Bioscape Searching Techniques →Bioentity Inference: Added another example.
- 13:56, 14 December 2009 diff hist +94 Bioscape Scoring Techniques →PubMed #7512734: Updated the example given newer results.
- 13:51, 14 December 2009 diff hist +2,550 Bioscape Searching Techniques Added more examples.
- 13:33, 14 December 2009 diff hist +689 Bioscape Searching Techniques Added bioentity-specific example.
- 17:20, 9 December 2009 diff hist +474 N Bioinformatics Data Resources New page: * [http://jura.wi.mit.edu/entrez_gene/entrezgene.html Entrez Gene Database Description and Files] - scripts and a schema for parsing Entrez Gene data and populating a database * [http://en... current
- 16:13, 9 December 2009 diff hist +36 Bioscape Manual Added new document.
- 16:13, 9 December 2009 diff hist +1,198 N DiG: Disease groups/Bioscape Notes New page: Some notes related to disease groups and Bioscape. ---- Possible MeSH terms: * Fanconi Anemia Search for FANCD2 and "Fanconi Anemia": * [http://bioscape.uio.no/cgi-bin/bsweb.cgi/quali...
- 17:50, 7 December 2009 diff hist +436 Bioscape Tokenisation Added example issue.
- 19:31, 4 December 2009 diff hist +2,370 Bioscape Searching Techniques Added possible synonym definition technique.
- 18:36, 4 December 2009 diff hist +1,697 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Added disambiguation techniques.
- 16:05, 4 December 2009 diff hist +11 m Bioscape Searching Techniques →PubMed #10484778: Fixed quoted text in table.
- 17:59, 3 December 2009 diff hist +1,470 Bioscape Searching Techniques Added more examples.
- 17:41, 3 December 2009 diff hist +37 Bioscape Manual Added link to new page.
- 17:41, 3 December 2009 diff hist +3,359 N Bioscape Searching Techniques New page: A number of searching techniques are applied to find textual mentions of entities or concepts, particularly those where the nature of the searching is speculative, meaning that no predefin...
- 15:07, 3 December 2009 diff hist 0 m Bioscape Manual Moved development link.
- 15:18, 2 December 2009 diff hist +136 Bioscape Development →Adding New Search Result Types: Added Web translations note.
- 15:05, 2 December 2009 diff hist +176 Bioscape Development →Adding New Search Result Types: Added database template note.
- 09:00, 2 December 2009 diff hist +101 Bioscape Scoring Techniques Added missing suggestions.
- 16:33, 1 December 2009 diff hist +3,374 Bioscape Scoring Techniques Added more examples.
- 13:28, 26 November 2009 diff hist +3,794 Bioscape Scoring Techniques Added some acronym mention techniques.
- 15:42, 24 November 2009 diff hist +762 Bioscape Scoring Techniques Added chromosome information correspondence.
- 16:41, 23 November 2009 diff hist +1,664 Bioscape Scoring Techniques Added Gene Ontology-related techniques.
- 13:29, 23 November 2009 diff hist +2,974 Bioscape Scoring Techniques Added more examples.
- 12:55, 23 November 2009 diff hist -127 Bioscape Methods Replaced section, linking to a more comprehensive document.
- 12:54, 23 November 2009 diff hist +2,093 N Bioscape Scoring Techniques Started a collection of scoring techniques.
- 12:31, 23 November 2009 diff hist +94 Bioscape Manual Added missing links plus new document.
- 12:29, 23 November 2009 diff hist +42 Bioscape Workflow Added links to methods/scoring documentation.
- 17:07, 17 November 2009 diff hist +1,435 N Bioscape Result Assessment New page: The suggestions produced by Bioscape's search activities can be assessed subject to the availability of "gold standard" data which confirms whether each particular result can be regarded a...
- 13:24, 17 November 2009 diff hist +33 Bioscape Manual Added link to new page.
- 18:29, 16 November 2009 diff hist 0 File:Bioscape-advanced-search-dialogue.png uploaded a new version of "Image:Bioscape-advanced-search-dialogue.png": The Bioscape advanced search dialogue. current
- 18:26, 16 November 2009 diff hist +440 Using the Bioscape Web Application →Gene Summaries: Added ad-hoc details. current
- 18:25, 16 November 2009 diff hist +46 N File:Bioscape-gene-summary-adhoc-detail.png Qualifier details for a Bioscape gene summary. current
- 18:21, 16 November 2009 diff hist +75 N File:Bioscape-gene-summary-adhoc.png The Bioscape gene summary with a qualifier term used to filter the results. current
- 18:16, 16 November 2009 diff hist 0 File:Bioscape-gene-summary.png uploaded a new version of "Image:Bioscape-gene-summary.png": The Bioscape gene summary. current
- 18:16, 16 November 2009 diff hist 0 File:Bioscape-search-disambiguation-dialogue.png uploaded a new version of "Image:Bioscape-search-disambiguation-dialogue.png": The Bioscape search disambiguation dialogue. current
- 18:14, 16 November 2009 diff hist +1,409 Using the Bioscape Web Application →Searching: Updated search dialogue, added ad-hoc field description.
- 17:54, 16 November 2009 diff hist +59 N File:Bioscape-search-dialogue-adhoc.png The Bioscape search dialogue with ad-hoc search facilities. current
- 20:29, 13 November 2009 diff hist +3,142 Bioscape Workflow Added labelling and data hierarchy notes.
- 20:07, 13 November 2009 diff hist +410 N Supported Data Sources Incomplete draft.
- 19:45, 13 November 2009 diff hist +129 Bioscape Data Sources Added link to new page.
- 19:18, 11 November 2009 diff hist +659 Bioscape Tokenisation
- 15:03, 11 November 2009 diff hist +1,423 N Bioscape Tokenisation Initial notes.
- 14:52, 11 November 2009 diff hist +163 Bioscape Searching →Tokenisation: Added link to new page.
- 14:48, 11 November 2009 diff hist +61 Bioscape Indexing Qualified the B-tree remarks.
- 17:47, 6 November 2009 diff hist +716 Bioscape Searching →Phrases and Validation: Added validation example.
- 13:03, 6 November 2009 diff hist +1,612 Bioscape Data Sources Added export and extraction notes, overview.
- 12:51, 6 November 2009 diff hist +908 Bioscape Searching Added reading and writing notes.
- 15:39, 5 November 2009 diff hist +1,496 Bioscape Searching →Locating Matches: Added the start of the description of phrases and validation.
- 15:04, 5 November 2009 diff hist +552 Bioscape Searching Modified locator tasks.
- 14:57, 5 November 2009 diff hist +2,126 Bioscape Searching Added derived term generation description, variation generation summary. Reordered sections.
- 14:04, 5 November 2009 diff hist +1,271 Bioscape Searching Added overview/workflow diagrams.
- 19:20, 4 November 2009 diff hist +1,812 Bioscape Searching →Variations within Search Terms: Added a description of the variation mechanisms.
- 17:36, 4 November 2009 diff hist +609 Bioscape Searching →Search Overview: Added speculative search diagram and description.
- 14:04, 3 November 2009 diff hist +1,065 Bioscape Searching Added overview/workflow.
- 13:23, 30 October 2009 diff hist +1 Bioscape Indexing Updated Lucene format link, fixed wording.
- 12:59, 30 October 2009 diff hist +493 Bioscape Indexing Added indexing solution file format references.
- 13:20, 29 October 2009 diff hist +1,746 Bioscape Indexing Added identifier conversion notes.
- 13:45, 27 October 2009 diff hist +98 Text Indexing Resources Added Tokyo Dystopia. current
- 13:43, 26 October 2009 diff hist +10,581 iRefIndex/PBR Notes Added explanatory queries, details. Moved observations to the top. current
- 11:00, 26 October 2009 diff hist +22 iRefIndex/PBR Notes →Observations: Fixed first observation: "BIND identifiers" -> "distinct human interaction identifiers".
- 17:35, 23 October 2009 diff hist -72 MediaWiki:CustomEditTemplates The CustomEdit extension seems too restrictive for our purposes. current
- 15:49, 23 October 2009 diff hist +2,805 N Bioscape Data Types New page: Bioscape is aware of a number of different data types, focusing mostly on the notion of a bioentity, but handling that and other kinds of data. These data types are defined in the <tt>bios...
- 15:27, 23 October 2009 diff hist +26 Bioscape Manual Added link to a new page.
- 13:00, 23 October 2009 diff hist +98 Nm UNTITLED Dummy article created for Simple Forms extension current
- 12:29, 23 October 2009 diff hist +72 N MediaWiki:CustomEditTemplates New page: * Template:BioinformaticsPerson - used to edit bioinformatics people
- 16:34, 22 October 2009 diff hist +2,454 iRefIndex/PBR Notes →Retrieving BIND Identifiers: Added query for identifiers without considering interactions.