User contributions
From irefindex
- 12:01, 23 March 2010 diff hist +28,869 N README iRefIndex MITAB 7.0 Initial version for 7.0.
- 16:54, 19 March 2010 diff hist +78 README iRefIndex MITAB 6.1 →Understanding the iRefIndex MITAB format: Added full text link.
- 17:24, 18 March 2010 diff hist +82 iRefIndex Maintenance Added another solution link.
- 14:47, 18 March 2010 diff hist +449 README iRefIndex MITAB 6.1 →Understanding the iRefIndex MITAB format: Added column summary table.
- 14:48, 16 March 2010 diff hist +144 iRefIndex Output and Statistics →Running PSI_MI_TAB_Maker: Added note about table preparation.
- 14:11, 15 March 2010 diff hist +41 Bioscape Result Assessment →Isolating Correct and Incorrect Bioscape Results: Added true positive distinctions.
- 19:17, 10 March 2010 diff hist +3,089 Bioscape Result Assessment Added BioCreative import details.
- 14:14, 10 March 2010 diff hist +95 iRefIndex Output and Statistics →Running BioPSI_Suplimenter to Produce Statistics: Added note about this step being optional for a completed build process.
- 16:32, 9 March 2010 diff hist +374 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Added note about propagating data from the full version when building the free version.
- 16:24, 9 March 2010 diff hist +207 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Added workaround.
- 15:54, 9 March 2010 diff hist +13,474 N Statistics iRefIndex free 7.0 Tentative statistics export.
- 11:56, 9 March 2010 diff hist -341 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Simplified Eutils advice.
- 14:57, 1 March 2010 diff hist +70 iRefIndex Build Process →BioGrid: Used a generic filename.
- 11:47, 1 March 2010 diff hist -9 iRefIndex Build Process →BioGrid: Changed ORGANISM to ALL.
- 18:48, 25 February 2010 diff hist +1,016 Bioscape Methods Added filtering and scoring notes.
- 14:01, 25 February 2010 diff hist +1,449 iRefIndex Build Process Added post-parsing validation measures, notes about free/excluded data sources. Removed CORUM preprocessing note.
- 12:44, 25 February 2010 diff hist +53 iRefIndex Build Process →Manual loading of data: Tidied formatting.
- 14:31, 22 February 2010 diff hist +273 iRefIndex Build Process →Running SaxValidator: Added notes about invalid files.
- 19:42, 18 February 2010 diff hist -688 iRefIndex Build Process →Running StaxPSIXML: The CORUM-specific fix does not seem to be necessary on the recently downloaded file.
- 18:11, 18 February 2010 diff hist 0 m iRefIndex Build Process Changed dates and date formats.
- 14:17, 18 February 2010 diff hist +427 iRefIndex Build Process →Fill Bind info: Added notes about the "Base loc" and "Date info" fields.
- 14:03, 18 February 2010 diff hist +579 iRefIndex Build Process →Manual Downloads: Added notes about BIND Translation.
- 16:40, 17 February 2010 diff hist +802 iRefIndex Build Process Added build instructions. Made separate build/running sections.
- 16:22, 17 February 2010 diff hist +1 iRefIndex Build Process →Validation and integrity checks: Changed formatting and date format.
- 14:04, 17 February 2010 diff hist +288 Text Mining Resources Added NLTK-related resources, Wikipedia pronoun page link. current
- 13:59, 17 February 2010 diff hist +1,480 N iRefIndex Maintenance Added a page about maintenance issues.
- 13:41, 17 February 2010 diff hist +28 iRefIndex Manual Added link to a new page.
- 16:55, 16 February 2010 diff hist 0 iRefIndex Release Process Moved feedback section.
- 15:29, 16 February 2010 diff hist -5 iRefIndex Build Process →Building SHA: Changed output directory.
- 16:22, 12 February 2010 diff hist +896 Bioscape Tokenisation →Adopting "Lossy" Tokenisation: Added notes on suitable filtering of tokens.
- 15:30, 12 February 2010 diff hist +1,461 Bioscape Tokenisation Added more details of the different potential tokenisation approaches.
- 18:51, 11 February 2010 diff hist +16 Sources and Issues Next Release →Interaction related resources: Fixed/added dates.
- 14:51, 11 February 2010 diff hist +25 Sources and Issues Next Release →Interaction related resources: Updated versions and dates.
- 14:14, 11 February 2010 diff hist +118 Sources and Issues Next Release →Sequence related resources: Updated versions and dates.
- 14:39, 10 February 2010 diff hist +468 Bioscape Searching →Selecting Search Resources: Added a note about stop word-based terms.
- 18:23, 9 February 2010 diff hist +68 iRefIndex Build Process →Downloading the Source Data: Adjustments to the source lists.
- 12:33, 9 February 2010 diff hist +3 iRefIndex Build Process →DIP: Fixed filename.
- 18:49, 8 February 2010 diff hist 0 iRefIndex Build Process →MIPS: Fixed pathname in example.
- 17:30, 8 February 2010 diff hist +52 iRefIndex Build Process →OPHID: Added deprecation note.
- 17:29, 8 February 2010 diff hist -97 iRefIndex Build Process →I2D: Fixed commands for specific filename details.
- 17:11, 8 February 2010 diff hist +674 iRefIndex Build Process →Manual Downloads: Added I2D section.
- 15:21, 8 February 2010 diff hist +124 Text Mining Resources
- 12:29, 4 February 2010 diff hist +115 Text Mining Resources
- 19:27, 29 January 2010 diff hist +234 Text Mining Resources
- 19:24, 29 January 2010 diff hist +368 Text Mining Resources
- 16:56, 26 January 2010 diff hist +1,232 N Displaying Bioscape Search Results Initial notes.
- 16:45, 26 January 2010 diff hist +42 Bioscape Manual Added link to a new page.
- 13:15, 26 January 2010 diff hist -260 iRefIndex Build Process Updated the instructions, removed FTPtransfer modification step, added data directory argument.
- 10:51, 26 January 2010 diff hist -14 m README iRefIndex expanded MITAB proposal →Understanding the iRefIndex MITAB format: Fixed formatting, or at least prevented weird list construction.
- 18:23, 21 January 2010 diff hist +827 Bioscape Web Resources Added templates.
- 16:15, 21 January 2010 diff hist +674 iRefScape 0.6 Added font rendering tip, distribution package details.
- 13:53, 21 January 2010 diff hist +290 Text Mining Resources →Text Search Resources: Added PMC open access resource information.
- 13:47, 21 January 2010 diff hist +133 Text Mining Resources →Text Search Resources: Added BioMed Central information.
- 16:20, 20 January 2010 diff hist +28 iRefScape 0.6 →Windows Vista and Windows XP: Minor formatting changes.
- 14:50, 20 January 2010 diff hist +114 iRefScape 0.6 →Usage: Added dialogues. Reordered sections, introducing advanced mode first.
- 13:47, 20 January 2010 diff hist 0 File:IRefIndex-Cytoscape-Advanced.png uploaded a new version of "Image:IRefIndex-Cytoscape-Advanced.png": The iRefIndex plugin panel in advanced mode. current
- 13:46, 20 January 2010 diff hist +44 N File:IRefIndex-Cytoscape-Advanced.png The iRefIndex plugin panel in advanced mode.
- 13:41, 20 January 2010 diff hist +216 iRefScape 0.6 →Usage: Moved images around, edited the wording.
- 13:18, 20 January 2010 diff hist +355 iRefScape 0.6 →Usage: Added dialogues.
- 12:59, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step5.png Step 5 of the iRefIndex plugin wizard. current
- 12:59, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step4.png Step 4 of the iRefIndex plugin wizard. current
- 12:58, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step3.png Step 3 of the iRefIndex plugin wizard. current
- 12:57, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step2.png Step 2 of the iRefIndex plugin wizard. current
- 12:55, 20 January 2010 diff hist +37 N File:IRefIndex-Cytoscape-Wizard.png The iRefIndex plugin wizard dialogue. current
- 12:53, 20 January 2010 diff hist +57 iRefScape 0.6 Added breaks in the formatting. Moved some images around. Minor edits.
- 12:43, 20 January 2010 diff hist +265 iRefScape 0.6 →Completing the installation: Added dialogues.
- 12:42, 20 January 2010 diff hist 0 File:IRefIndex-Cytoscape-Success.png uploaded a new version of "Image:IRefIndex-Cytoscape-Success.png": A successful iRefIndex plugin installation. current
- 12:39, 20 January 2010 diff hist +50 N File:IRefIndex-Cytoscape-Success.png A successful installation of the iRefIndex plugin.
- 12:36, 20 January 2010 diff hist +39 N File:IRefIndex-Cytoscape-Download.png The iRefIndex plugin download dialogue. current
- 12:35, 20 January 2010 diff hist +44 N File:IRefIndex-Cytoscape-Location.png The iRefIndex plugin data location dialogue. current
- 12:32, 20 January 2010 diff hist +249 iRefScape 0.6 →Using Cytoscape plugin manager: Added dialogues.
- 12:28, 20 January 2010 diff hist +40 N File:IRefIndex-Cytoscape-Bookmark-manager.png The Cytoscape Bookmark manager dialogue. current
- 12:28, 20 January 2010 diff hist +45 N File:IRefIndex-Cytoscape-Plugin-Download-Sites.png The Cytoscape Plugin Download Sites dialogue. current
- 12:27, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Manage-Plugins.png The Cytoscape Manage Plugins dialogue. current
- 12:23, 20 January 2010 diff hist +312 iRefScape 0.6 →Using Cytoscape plugin manager: Added uninstall notes.
- 12:24, 19 January 2010 diff hist +279 Text Mining Resources
- 16:31, 18 January 2010 diff hist +164 Text Mining Resources
- 19:48, 18 December 2009 diff hist +1,259 Bioscape Tokenisation Added gene keyword-related note.
- 18:05, 16 December 2009 diff hist +867 Bioscape Scoring Techniques →Assuming the Presence of Gene Symbols: Added gene summary-related example.
- 17:58, 16 December 2009 diff hist +1,039 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Added awkward acronym detection case.
- 17:43, 16 December 2009 diff hist +935 Bioscape Scoring Techniques Added example involving gene symbol assertions.
- 15:26, 15 December 2009 diff hist +43 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Moved example and tagged it with a method.
- 15:31, 14 December 2009 diff hist +1,275 Bioscape Scoring Techniques Added disqualifier-related techniques.
- 14:20, 14 December 2009 diff hist +1,129 Bioscape Scoring Techniques Added an example of parentheses-related scoring.
- 14:05, 14 December 2009 diff hist +1,123 Bioscape Searching Techniques →Bioentity Inference: Added another example.
- 13:56, 14 December 2009 diff hist +94 Bioscape Scoring Techniques →PubMed #7512734: Updated the example given newer results.
- 13:51, 14 December 2009 diff hist +2,550 Bioscape Searching Techniques Added more examples.
- 13:33, 14 December 2009 diff hist +689 Bioscape Searching Techniques Added bioentity-specific example.
- 17:20, 9 December 2009 diff hist +474 N Bioinformatics Data Resources New page: * [http://jura.wi.mit.edu/entrez_gene/entrezgene.html Entrez Gene Database Description and Files] - scripts and a schema for parsing Entrez Gene data and populating a database * [http://en... current
- 16:13, 9 December 2009 diff hist +36 Bioscape Manual Added new document.
- 16:13, 9 December 2009 diff hist +1,198 N DiG: Disease groups/Bioscape Notes New page: Some notes related to disease groups and Bioscape. ---- Possible MeSH terms: * Fanconi Anemia Search for FANCD2 and "Fanconi Anemia": * [http://bioscape.uio.no/cgi-bin/bsweb.cgi/quali...
- 17:50, 7 December 2009 diff hist +436 Bioscape Tokenisation Added example issue.
- 19:31, 4 December 2009 diff hist +2,370 Bioscape Searching Techniques Added possible synonym definition technique.
- 18:36, 4 December 2009 diff hist +1,697 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Added disambiguation techniques.
- 16:05, 4 December 2009 diff hist +11 m Bioscape Searching Techniques →PubMed #10484778: Fixed quoted text in table.
- 17:59, 3 December 2009 diff hist +1,470 Bioscape Searching Techniques Added more examples.
- 17:41, 3 December 2009 diff hist +37 Bioscape Manual Added link to new page.
- 17:41, 3 December 2009 diff hist +3,359 N Bioscape Searching Techniques New page: A number of searching techniques are applied to find textual mentions of entities or concepts, particularly those where the nature of the searching is speculative, meaning that no predefin...
- 15:07, 3 December 2009 diff hist 0 m Bioscape Manual Moved development link.
- 15:18, 2 December 2009 diff hist +136 Bioscape Development →Adding New Search Result Types: Added Web translations note.