User contributions
From irefindex
- 16:28, 1 July 2010 diff hist -4 Template:Note →Method 1: Attempt to make the template actually work.
- 16:26, 1 July 2010 diff hist +2 Template:Note →Method 1: Attempt to make the template actually work.
- 16:17, 1 July 2010 diff hist +726 Template:Note Added support for a different label, hopefully.
- 16:06, 1 July 2010 diff hist +17 Template:Note Changed text appearance.
- 16:05, 1 July 2010 diff hist +17 Template:Warning Changed text appearance. current
- 15:41, 1 July 2010 diff hist +21 Template:Warning Edited to match the note template.
- 15:39, 1 July 2010 diff hist +57 Template:Note Added padding and border.
- 15:37, 1 July 2010 diff hist -42 Template:Note Changed the label depending on whether a parameter is supplied.
- 15:16, 1 July 2010 diff hist +3 Template:Warning Changed icon alignment.
- 15:09, 1 July 2010 diff hist +3 Template:Note Changed icon alignment.
- 13:32, 1 July 2010 diff hist 0 Template:Note Fixed usage.
- 13:16, 1 July 2010 diff hist +172 Template:Note Fixed template rule, adopting the warning template's rule.
- 13:13, 1 July 2010 diff hist +33 N File:Attention niels epting.svg Warning icon from MediaWiki 1.16. current
- 13:12, 1 July 2010 diff hist +33 N File:Attention niels epting-18px.svg.png Warning icon from MediaWiki 1.16. current
- 13:07, 1 July 2010 diff hist 0 Template:Warning Fixed usage.
- 12:52, 1 July 2010 diff hist 0 Template:Note →Usage: Fixed template usage.
- 09:59, 1 July 2010 diff hist -82 Bioinformatics course Switched to percentages. Removed weird "skype highlighting" text. Tidied whitespace. Fixed year.
- 14:46, 30 June 2010 diff hist +113 iRefIndex MITAB2.5 Parser Added a link to the format description.
- 11:59, 30 June 2010 diff hist +77 Donaldson Group Tidied the content. Updated the Bioseminar details.
- 13:39, 15 June 2010 diff hist +900 Bioscape Searching Techniques Added example involving collections/sequences.
- 12:58, 14 June 2010 diff hist 0 m iRefScape 0.8 Installation Minor notation changes.
- 16:02, 10 June 2010 diff hist +193 iRefScape 0.8 Installation →Manual Installation: Improved and extended the note.
- 10:59, 10 June 2010 diff hist 0 m iRefIndex Minor capitalisation and punctuation fixes.
- 10:56, 10 June 2010 diff hist +24 m iRefScape 0.8 Installation Added category.
- 10:32, 10 June 2010 diff hist +1 m iRefScape 0.8 Installation Minor capitalisation and punctuation fixes.
- 10:14, 10 June 2010 diff hist +461 iRefScape 0.8 Installation Various formatting and other changes/updates.
- 09:45, 9 June 2010 diff hist -134 m iRefScape 0.8 Formatting changes to tables.
- 14:43, 8 June 2010 diff hist +72 iRefScape 0.8 Modified headings. Moved images.
- 14:37, 8 June 2010 diff hist +284 iRefScape 0.8 →Advanced path-finding: Added new images.
- 14:37, 8 June 2010 diff hist +32 N File:iRefIndex-0.83-path-original.png The path highlighted in a graph. current
- 14:25, 8 June 2010 diff hist 0 File:iRefIndex-0.83-path.png uploaded a new version of "File:iRefIndex-0.83-path.png": A path highlighted in a graph. current
- 14:22, 8 June 2010 diff hist +30 N File:iRefIndex-0.83-path.png A path highlighted in a graph.
- 14:21, 8 June 2010 diff hist +53 N File:iRefIndex-0.83-path-selector.png The path selector for search results producing paths. current
- 12:37, 8 June 2010 diff hist +1,422 iRefScape 0.8 Further edits, tidying.
- 11:37, 8 June 2010 diff hist +2,254 iRefScape 0.8 Various formatting and other changes/updates.
- 11:13, 8 June 2010 diff hist 0 File:iRefIndex-0.83-node-attributes-close-up-closed.png uploaded a new version of "File:iRefIndex-0.83-node-attributes-close-up-closed.png": The location of the node attributes menu. current
- 10:58, 8 June 2010 diff hist +30 N File:iRefIndex-0.83-node-attributes-close-up-open.png The open node attributes menu. current
- 10:57, 8 June 2010 diff hist +41 N File:iRefIndex-0.83-node-attributes-close-up-closed.png The location of the node attributes menu.
- 09:50, 2 June 2010 diff hist +8 m Plugin test cases 0.8 Fixed syntax to make query inputs clearer.
- 12:40, 21 May 2010 diff hist +1,219 Bioscape Issues and Tasks Added a task list.
- 12:26, 21 May 2010 diff hist +276 N iRefIndex Issues and Notes New page: This document describes ongoing work to improve the iRefIndex software. == Tasks == * Validation documentation * Fix/improve SaxValidator to automate troubleshooting * Write a top-level ...
- 12:24, 21 May 2010 diff hist +99 iRefIndex Development Added link to a new page.
- 17:19, 18 May 2010 diff hist +2 m README iRefIndex Feedback 7.0 Fixed syntax. current
- 17:17, 18 May 2010 diff hist +2 m README iRefIndex MITAB experiment proposal for 7.0 →Changes from last version: Formatting changes.
- 17:16, 18 May 2010 diff hist +2 m README iRefIndex MITAB 7.0 →Changes from last version: Formatting changes. current
- 17:15, 18 May 2010 diff hist +51 Statistics iRefIndex 7.0 →Summary: Changed last updated date.
- 15:34, 14 May 2010 diff hist +595 Bioscape Configuration →Bioscape: Updated the configuration script instructions.
- 13:03, 28 April 2010 diff hist +1,663 iRefIndex Maintenance Added some recommendations.
- 17:18, 27 April 2010 diff hist +235 iRefIndex Maintenance Restructured somewhat, added remark about non-existent alternatives.
- 17:14, 26 April 2010 diff hist +419 iRefIndex Maintenance Added XtraBackup notes.
- 14:21, 26 April 2010 diff hist +359 iRefIndex Maintenance →Moving Tables into Separate Table Files: Added conclusion about the table optimisation approach.
- 13:36, 26 April 2010 diff hist +416 iRefIndex Maintenance →Moving Tables into Separate Table Files: Added notes about the outcome of table optimisation.
- 11:58, 23 April 2010 diff hist +1,255 iRefIndex Maintenance Added table moving notes.
- 14:24, 21 April 2010 diff hist +232 Bioscape Configuration →Web Interface: Moved preparation script, added system package notes.
- 12:20, 21 April 2010 diff hist +3,768 N Bioscape Configuration Moved from the installation page, removing the database configuration section (now redundant).
- 12:19, 21 April 2010 diff hist -3,889 Bioscape Installation Moved configuration information to another page.
- 12:19, 21 April 2010 diff hist +29 Bioscape Manual Added new page.
- 10:51, 20 April 2010 diff hist +296 iRefIndex Maintenance →Dumping and Restoring Databases: Added background-capable commands.
- 10:06, 20 April 2010 diff hist +843 iRefIndex Maintenance Added dump/restore recommendations.
- 16:51, 16 April 2010 diff hist -3 Bioscape Installation →Quick Start: Fixed command options.
- 16:44, 16 April 2010 diff hist +804 Bioscape Installation →PostgreSQL: Added notes about encoding/locale issues and cluster reinitialisation.
- 13:24, 29 March 2010 diff hist +4,774 N Sources iRefIndex 7.0 Initial version for 7.0.
- 13:19, 29 March 2010 diff hist +64 Sources and Issues Next Release Added variable usage for the last edited date.
- 17:47, 26 March 2010 diff hist +751 Bioscape Result Assessment →Comparing BioCreative Results and Bioscape Results: Added ambiguity result set notes.
- 19:07, 23 March 2010 diff hist +2,512 iRefIndex MITAB2.5 Parser Added schema description.
- 18:35, 23 March 2010 diff hist +11 iRefIndex MITAB2.5 Parser →Creating the Database: Using preferred option to create the database.
- 18:24, 23 March 2010 diff hist +9 README iRefIndex MITAB 7.0 →Column number: 1 (uidA): ROGID of complex is RIGID.
- 18:20, 23 March 2010 diff hist +19 README iRefIndex MITAB 7.0 →Column number: 1 (uidA): Changed the wording slightly, reformatted.
- 17:05, 23 March 2010 diff hist +114 README iRefIndex MITAB 7.0 →Column number: 14 (interactionIdentifiers): Changed example to include an iRefIndex identifier.
- 15:03, 23 March 2010 diff hist -67 README iRefIndex MITAB 7.0 →Column number: 14 (interactionIdentifiers): Changed FOUND to - for unavailable identifiers.
- 12:01, 23 March 2010 diff hist +28,869 N README iRefIndex MITAB 7.0 Initial version for 7.0.
- 16:54, 19 March 2010 diff hist +78 README iRefIndex MITAB 6.1 →Understanding the iRefIndex MITAB format: Added full text link.
- 17:24, 18 March 2010 diff hist +82 iRefIndex Maintenance Added another solution link.
- 14:47, 18 March 2010 diff hist +449 README iRefIndex MITAB 6.1 →Understanding the iRefIndex MITAB format: Added column summary table.
- 14:48, 16 March 2010 diff hist +144 iRefIndex Output and Statistics →Running PSI_MI_TAB_Maker: Added note about table preparation.
- 14:11, 15 March 2010 diff hist +41 Bioscape Result Assessment →Isolating Correct and Incorrect Bioscape Results: Added true positive distinctions.
- 19:17, 10 March 2010 diff hist +3,089 Bioscape Result Assessment Added BioCreative import details.
- 14:14, 10 March 2010 diff hist +95 iRefIndex Output and Statistics →Running BioPSI_Suplimenter to Produce Statistics: Added note about this step being optional for a completed build process.
- 16:32, 9 March 2010 diff hist +374 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Added note about propagating data from the full version when building the free version.
- 16:24, 9 March 2010 diff hist +207 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Added workaround.
- 15:54, 9 March 2010 diff hist +13,474 N Statistics iRefIndex free 7.0 Tentative statistics export.
- 11:56, 9 March 2010 diff hist -341 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Simplified Eutils advice.
- 14:57, 1 March 2010 diff hist +70 iRefIndex Build Process →BioGrid: Used a generic filename.
- 11:47, 1 March 2010 diff hist -9 iRefIndex Build Process →BioGrid: Changed ORGANISM to ALL.
- 18:48, 25 February 2010 diff hist +1,016 Bioscape Methods Added filtering and scoring notes.
- 14:01, 25 February 2010 diff hist +1,449 iRefIndex Build Process Added post-parsing validation measures, notes about free/excluded data sources. Removed CORUM preprocessing note.
- 12:44, 25 February 2010 diff hist +53 iRefIndex Build Process →Manual loading of data: Tidied formatting.
- 14:31, 22 February 2010 diff hist +273 iRefIndex Build Process →Running SaxValidator: Added notes about invalid files.
- 19:42, 18 February 2010 diff hist -688 iRefIndex Build Process →Running StaxPSIXML: The CORUM-specific fix does not seem to be necessary on the recently downloaded file.
- 18:11, 18 February 2010 diff hist 0 m iRefIndex Build Process Changed dates and date formats.
- 14:17, 18 February 2010 diff hist +427 iRefIndex Build Process →Fill Bind info: Added notes about the "Base loc" and "Date info" fields.
- 14:03, 18 February 2010 diff hist +579 iRefIndex Build Process →Manual Downloads: Added notes about BIND Translation.
- 16:40, 17 February 2010 diff hist +802 iRefIndex Build Process Added build instructions. Made separate build/running sections.
- 16:22, 17 February 2010 diff hist +1 iRefIndex Build Process →Validation and integrity checks: Changed formatting and date format.
- 14:04, 17 February 2010 diff hist +288 Text Mining Resources Added NLTK-related resources, Wikipedia pronoun page link. current
- 13:59, 17 February 2010 diff hist +1,480 N iRefIndex Maintenance Added a page about maintenance issues.
- 13:41, 17 February 2010 diff hist +28 iRefIndex Manual Added link to a new page.
- 16:55, 16 February 2010 diff hist 0 iRefIndex Release Process Moved feedback section.
- 15:29, 16 February 2010 diff hist -5 iRefIndex Build Process →Building SHA: Changed output directory.
- 16:22, 12 February 2010 diff hist +896 Bioscape Tokenisation →Adopting "Lossy" Tokenisation: Added notes on suitable filtering of tokens.