User contributions
From irefindex
- 12:00, 14 September 2010 diff hist +47 iRefIndex Build Process →BIND Translation: Updated the download information.
- 09:32, 6 September 2010 diff hist -71 m Bioinformatics course Removed weird "skype highlighting" text.
- 13:46, 23 August 2010 diff hist -11 iRefIndex →Contact: Fixed link to new Biotek site.
- 14:31, 5 August 2010 diff hist +3 m README MITAB2.6 for iRefIndex 7.0 →Understanding the iRefIndex MITAB format: Minor fixes and formatting changes.
- 16:58, 15 July 2010 diff hist -356 Bioseminar Updated the page to give details of the new arrangements.
- 16:48, 15 July 2010 diff hist +5,192 Bioscape Result Assessment Added notes about disambiguation using unambiguous/reliable gene mentions. current
- 13:49, 14 July 2010 diff hist -92 m Bioscape Issues and Tasks Moved note to a separate page. current
- 13:48, 14 July 2010 diff hist -92 m Bioscape Development Moved note to a separate page. current
- 13:48, 14 July 2010 diff hist +22 m Displaying Bioscape Search Results Added status note. current
- 13:47, 14 July 2010 diff hist +22 m Bioscape Web Resources Added status note. current
- 13:47, 14 July 2010 diff hist +22 m Bioscape Result Assessment Added status note.
- 13:46, 14 July 2010 diff hist +22 m Bioscape Searching Techniques Added status note. current
- 13:46, 14 July 2010 diff hist +22 m Bioscape Searching Added status note. current
- 13:45, 14 July 2010 diff hist +22 m Bioscape Tokenisation Added status note. current
- 13:45, 14 July 2010 diff hist +71 Bioscape Indexing Added status note. Clarified the status of the indexing solutions used in Bioscape. current
- 13:44, 14 July 2010 diff hist +22 m Bioscape Scoring Techniques Added status note. current
- 13:43, 14 July 2010 diff hist -92 m Bioscape Methods Moved note to a separate page. current
- 13:42, 14 July 2010 diff hist +22 m Bioscape Data Types Added status note. current
- 13:41, 14 July 2010 diff hist +141 Supported Data Sources Added status note, changed note appearances, added GeneRIF. current
- 13:39, 14 July 2010 diff hist +22 m Bioscape Data Sources Added status note. current
- 13:39, 14 July 2010 diff hist -92 m Bioscape Distribution Moved note to a separate page. current
- 13:38, 14 July 2010 diff hist +22 m Bioscape Workflow Added status note. current
- 13:38, 14 July 2010 diff hist +22 m Bioscape Configuration Added status note. current
- 13:37, 14 July 2010 diff hist -145 Bioscape Dependencies Moved note to a separate page. Removed Lucene from the dependencies. current
- 13:36, 14 July 2010 diff hist -92 m Bioscape Installation Moved note to a separate page. current
- 13:36, 14 July 2010 diff hist -92 m Bioscape Manual Moved note to a separate page. current
- 13:35, 14 July 2010 diff hist +103 N Bioscape Status Added a common note for inclusion in other pages. current
- 15:34, 9 July 2010 diff hist +6,161 N iRefIndex MITAB2.6 Parser Attempted to make a page corresponding to the revised MITAB format.
- 16:17, 8 July 2010 diff hist +485 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Added some notes about finding different group sizes.
- 15:27, 8 July 2010 diff hist +2,195 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Introduced sections. Added a description of the canonical interaction information.
- 18:12, 7 July 2010 diff hist -151 README iRefIndex MITAB2.6 proposal for 7.0 →Description: Updated version references.
- 18:10, 7 July 2010 diff hist +207 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Updated the table.
- 17:44, 7 July 2010 diff hist -2,717 README iRefIndex MITAB2.6 proposal for 7.0 Removed columns 41 and 42. Renumbered the columns and references to columns.
- 17:03, 7 July 2010 diff hist -1,168 README iRefIndex MITAB2.6 proposal for 7.0 Removed columns 47 (replacing 35), 53.
- 16:58, 7 July 2010 diff hist +231 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 52 (numParticipants): Added a description of how this value can be different from the number of distinct interactors.
- 16:56, 7 July 2010 diff hist -54 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 51 (edgetype): Removed notes.
- 16:54, 7 July 2010 diff hist -35 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 44 (entrezGeneIds_B): Replaced with irogB.
- 16:54, 7 July 2010 diff hist -115 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 43 (entrezGeneIds_A): Replaced with irogA.
- 16:48, 7 July 2010 diff hist +14 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 39 (Final_ROGID_A): Column change.
- 16:47, 7 July 2010 diff hist +4 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 36 (Negative): Added horizontal rule.
- 16:46, 7 July 2010 diff hist -278 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 34 (Checksum_B): Replaced with content from After_C13N_ROGID_B in column 42.
- 16:44, 7 July 2010 diff hist +2,196 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 33 (Checksum_A): Replaced the content with the After_ROGID_A content previously in column 41.
- 16:30, 7 July 2010 diff hist -1 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 1 (uidA): Fixed column type.
- 16:30, 7 July 2010 diff hist -29 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 2 (uidB): Changed the example to reflect the updated nature of the field.
- 16:29, 7 July 2010 diff hist -795 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 1 (uidA): Changed the nature of the identifier, as discussed.
- 16:27, 7 July 2010 diff hist -3 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Fixes in wording, formatting.
- 14:57, 6 July 2010 diff hist -10 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Fixed Final_ROGID names.
- 14:57, 6 July 2010 diff hist -5 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 40 (Final_C13N_ROGID_B): Fixed name, referenced column number.
- 14:56, 6 July 2010 diff hist -5 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 39 (Final_C13N_ROGID_A): Fixed name.
- 11:34, 5 July 2010 diff hist +33 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 11 (taxb): Fixed column type and description.
- 11:33, 5 July 2010 diff hist +33 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 10 (taxa): Fixed the column type and description.
- 11:18, 5 July 2010 diff hist -91 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 16 (expansion): Fixed internal link.
- 10:52, 5 July 2010 diff hist +90 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Updated the columns in the table.
- 10:13, 5 July 2010 diff hist +15 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 41 (After_C13N_ROGID_A): Tidying, name and column updates.
- 10:03, 5 July 2010 diff hist -4 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 48 (C13N_rig): Tidied up naming.
- 10:01, 5 July 2010 diff hist 0 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 52 (numParticipants): Fixed edgetype column number.
- 10:00, 5 July 2010 diff hist +100 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 53 (interaction_name): Tidied up. Expanded the "to do" note.
- 08:35, 5 July 2010 diff hist -68 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 51 (edgetype): Fixed link to refer within the same document.
- 16:46, 2 July 2010 diff hist +226 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 37 (OriginalReferenceA): Added a note about the relationship between this column and the old altA column.
- 15:59, 2 July 2010 diff hist -129 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 46 (MappingScoreB): Removed Sabry's marker.
- 15:58, 2 July 2010 diff hist +34 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 45 (MappingScoreA): Merged Sabry's comment and tidied.
- 15:50, 2 July 2010 diff hist +202 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 43 (entrezGeneIds_A): Added a more complete change note.
- 14:53, 2 July 2010 diff hist +183 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 5 (aliasA): Minor formatting, wording changes.
- 14:36, 2 July 2010 diff hist -2 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 32 (Update_date): Removed empty lines.
- 14:35, 2 July 2010 diff hist -13 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 29 (Host_organism_taxid): Various wording, formatting changes.
- 14:32, 2 July 2010 diff hist +45 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 26 (Annotations_A): Minor formatting changes.
- 14:05, 2 July 2010 diff hist +35 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 16 (expansion): Minor formatting changes.
- 14:02, 2 July 2010 diff hist +7 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 23 (xrefs_A): Minor formatting change.
- 13:57, 2 July 2010 diff hist -54 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 19 (experimental_role_A): Merged Sabry's comment.
- 13:56, 2 July 2010 diff hist +1 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 18 (biological_role_B): Minor formatting change.
- 13:56, 2 July 2010 diff hist -43 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 17 (biological_role_A): Minor formatting changes. Merged Sabry's comment.
- 13:53, 2 July 2010 diff hist +1 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 13 (sourcedb): Minor naming change.
- 13:52, 2 July 2010 diff hist +2 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 14 (interactionIdentifier): Minor formatting, wording changes.
- 13:49, 2 July 2010 diff hist +133 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 14 (interactionIdentifier): Minor formatting, wording changes.
- 13:46, 2 July 2010 diff hist +25 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 9 (pmids): Minor formatting, capitalisation changes.
- 13:20, 2 July 2010 diff hist +60 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 10 (taxa): Formatting changes.
- 12:59, 2 July 2010 diff hist -2,536 README iRefIndex MITAB2.6 proposal for 7.0 Removed column name table entries which were redundant duplicates of the headings. Added a change note about the altA column. Fixed some column types.
- 18:52, 1 July 2010 diff hist -121 README iRefIndex MITAB2.6 proposal for 7.0 Added a canonical interactor row to the explanatory table, moving various columns into it. Propagated column names for #39 and #40. Formatting changes. Updated various column headings.
- 16:59, 1 July 2010 diff hist +54,037 N README iRefIndex MITAB2.6 proposal for 7.0 Formatted the note at the top, added the table from 7.0 explaining the columns, added a last updated "macro". Introduced change note formatting. Formatted various examples.
- 16:33, 1 July 2010 diff hist +260 Template:Note →Usage: Added note about method 1. current
- 16:28, 1 July 2010 diff hist -4 Template:Note →Method 1: Attempt to make the template actually work.
- 16:26, 1 July 2010 diff hist +2 Template:Note →Method 1: Attempt to make the template actually work.
- 16:17, 1 July 2010 diff hist +726 Template:Note Added support for a different label, hopefully.
- 16:06, 1 July 2010 diff hist +17 Template:Note Changed text appearance.
- 16:05, 1 July 2010 diff hist +17 Template:Warning Changed text appearance. current
- 15:41, 1 July 2010 diff hist +21 Template:Warning Edited to match the note template.
- 15:39, 1 July 2010 diff hist +57 Template:Note Added padding and border.
- 15:37, 1 July 2010 diff hist -42 Template:Note Changed the label depending on whether a parameter is supplied.
- 15:16, 1 July 2010 diff hist +3 Template:Warning Changed icon alignment.
- 15:09, 1 July 2010 diff hist +3 Template:Note Changed icon alignment.
- 13:32, 1 July 2010 diff hist 0 Template:Note Fixed usage.
- 13:16, 1 July 2010 diff hist +172 Template:Note Fixed template rule, adopting the warning template's rule.
- 13:13, 1 July 2010 diff hist +33 N File:Attention niels epting.svg Warning icon from MediaWiki 1.16. current
- 13:12, 1 July 2010 diff hist +33 N File:Attention niels epting-18px.svg.png Warning icon from MediaWiki 1.16. current
- 13:07, 1 July 2010 diff hist 0 Template:Warning Fixed usage.
- 12:52, 1 July 2010 diff hist 0 Template:Note →Usage: Fixed template usage.
- 09:59, 1 July 2010 diff hist -82 Bioinformatics course Switched to percentages. Removed weird "skype highlighting" text. Tidied whitespace. Fixed year.
- 14:46, 30 June 2010 diff hist +113 iRefIndex MITAB2.5 Parser Added a link to the format description.
- 11:59, 30 June 2010 diff hist +77 Donaldson Group Tidied the content. Updated the Bioseminar details.
- 13:39, 15 June 2010 diff hist +900 Bioscape Searching Techniques Added example involving collections/sequences.
- 12:58, 14 June 2010 diff hist 0 m iRefScape 0.8 Installation Minor notation changes.
- 16:02, 10 June 2010 diff hist +193 iRefScape 0.8 Installation →Manual Installation: Improved and extended the note.
- 10:59, 10 June 2010 diff hist 0 m iRefIndex Minor capitalisation and punctuation fixes.
- 10:56, 10 June 2010 diff hist +24 m iRefScape 0.8 Installation Added category.
- 10:32, 10 June 2010 diff hist +1 m iRefScape 0.8 Installation Minor capitalisation and punctuation fixes.
- 10:14, 10 June 2010 diff hist +461 iRefScape 0.8 Installation Various formatting and other changes/updates.
- 09:45, 9 June 2010 diff hist -134 m iRefScape 0.8 Formatting changes to tables.
- 14:43, 8 June 2010 diff hist +72 iRefScape 0.8 Modified headings. Moved images.
- 14:37, 8 June 2010 diff hist +284 iRefScape 0.8 →Advanced path-finding: Added new images.
- 14:37, 8 June 2010 diff hist +32 N File:iRefIndex-0.83-path-original.png The path highlighted in a graph. current
- 14:25, 8 June 2010 diff hist 0 File:iRefIndex-0.83-path.png uploaded a new version of "File:iRefIndex-0.83-path.png": A path highlighted in a graph. current
- 14:22, 8 June 2010 diff hist +30 N File:iRefIndex-0.83-path.png A path highlighted in a graph.
- 14:21, 8 June 2010 diff hist +53 N File:iRefIndex-0.83-path-selector.png The path selector for search results producing paths. current
- 12:37, 8 June 2010 diff hist +1,422 iRefScape 0.8 Further edits, tidying.
- 11:37, 8 June 2010 diff hist +2,254 iRefScape 0.8 Various formatting and other changes/updates.
- 11:13, 8 June 2010 diff hist 0 File:iRefIndex-0.83-node-attributes-close-up-closed.png uploaded a new version of "File:iRefIndex-0.83-node-attributes-close-up-closed.png": The location of the node attributes menu. current
- 10:58, 8 June 2010 diff hist +30 N File:iRefIndex-0.83-node-attributes-close-up-open.png The open node attributes menu. current
- 10:57, 8 June 2010 diff hist +41 N File:iRefIndex-0.83-node-attributes-close-up-closed.png The location of the node attributes menu.
- 09:50, 2 June 2010 diff hist +8 m Plugin test cases 0.8 Fixed syntax to make query inputs clearer.
- 12:40, 21 May 2010 diff hist +1,219 Bioscape Issues and Tasks Added a task list.
- 12:26, 21 May 2010 diff hist +276 N iRefIndex Issues and Notes New page: This document describes ongoing work to improve the iRefIndex software. == Tasks == * Validation documentation * Fix/improve SaxValidator to automate troubleshooting * Write a top-level ...
- 12:24, 21 May 2010 diff hist +99 iRefIndex Development Added link to a new page.
- 17:19, 18 May 2010 diff hist +2 m README iRefIndex Feedback 7.0 Fixed syntax. current
- 17:17, 18 May 2010 diff hist +2 m README iRefIndex MITAB experiment proposal for 7.0 →Changes from last version: Formatting changes.
- 17:16, 18 May 2010 diff hist +2 m README iRefIndex MITAB 7.0 →Changes from last version: Formatting changes. current
- 17:15, 18 May 2010 diff hist +51 Statistics iRefIndex 7.0 →Summary: Changed last updated date.
- 15:34, 14 May 2010 diff hist +595 Bioscape Configuration →Bioscape: Updated the configuration script instructions.
- 13:03, 28 April 2010 diff hist +1,663 iRefIndex Maintenance Added some recommendations.
- 17:18, 27 April 2010 diff hist +235 iRefIndex Maintenance Restructured somewhat, added remark about non-existent alternatives.
- 17:14, 26 April 2010 diff hist +419 iRefIndex Maintenance Added XtraBackup notes.
- 14:21, 26 April 2010 diff hist +359 iRefIndex Maintenance →Moving Tables into Separate Table Files: Added conclusion about the table optimisation approach.
- 13:36, 26 April 2010 diff hist +416 iRefIndex Maintenance →Moving Tables into Separate Table Files: Added notes about the outcome of table optimisation.
- 11:58, 23 April 2010 diff hist +1,255 iRefIndex Maintenance Added table moving notes.
- 14:24, 21 April 2010 diff hist +232 Bioscape Configuration →Web Interface: Moved preparation script, added system package notes.
- 12:20, 21 April 2010 diff hist +3,768 N Bioscape Configuration Moved from the installation page, removing the database configuration section (now redundant).
- 12:19, 21 April 2010 diff hist -3,889 Bioscape Installation Moved configuration information to another page.
- 12:19, 21 April 2010 diff hist +29 Bioscape Manual Added new page.
- 10:51, 20 April 2010 diff hist +296 iRefIndex Maintenance →Dumping and Restoring Databases: Added background-capable commands.
- 10:06, 20 April 2010 diff hist +843 iRefIndex Maintenance Added dump/restore recommendations.
- 16:51, 16 April 2010 diff hist -3 Bioscape Installation →Quick Start: Fixed command options.
- 16:44, 16 April 2010 diff hist +804 Bioscape Installation →PostgreSQL: Added notes about encoding/locale issues and cluster reinitialisation.
- 13:24, 29 March 2010 diff hist +4,774 N Sources iRefIndex 7.0 Initial version for 7.0.
- 13:19, 29 March 2010 diff hist +64 Sources and Issues Next Release Added variable usage for the last edited date.
- 17:47, 26 March 2010 diff hist +751 Bioscape Result Assessment →Comparing BioCreative Results and Bioscape Results: Added ambiguity result set notes.
- 19:07, 23 March 2010 diff hist +2,512 iRefIndex MITAB2.5 Parser Added schema description.
- 18:35, 23 March 2010 diff hist +11 iRefIndex MITAB2.5 Parser →Creating the Database: Using preferred option to create the database.
- 18:24, 23 March 2010 diff hist +9 README iRefIndex MITAB 7.0 →Column number: 1 (uidA): ROGID of complex is RIGID.
- 18:20, 23 March 2010 diff hist +19 README iRefIndex MITAB 7.0 →Column number: 1 (uidA): Changed the wording slightly, reformatted.
- 17:05, 23 March 2010 diff hist +114 README iRefIndex MITAB 7.0 →Column number: 14 (interactionIdentifiers): Changed example to include an iRefIndex identifier.
- 15:03, 23 March 2010 diff hist -67 README iRefIndex MITAB 7.0 →Column number: 14 (interactionIdentifiers): Changed FOUND to - for unavailable identifiers.
- 12:01, 23 March 2010 diff hist +28,869 N README iRefIndex MITAB 7.0 Initial version for 7.0.
- 16:54, 19 March 2010 diff hist +78 README iRefIndex MITAB 6.1 →Understanding the iRefIndex MITAB format: Added full text link.
- 17:24, 18 March 2010 diff hist +82 iRefIndex Maintenance Added another solution link.
- 14:47, 18 March 2010 diff hist +449 README iRefIndex MITAB 6.1 →Understanding the iRefIndex MITAB format: Added column summary table.
- 14:48, 16 March 2010 diff hist +144 iRefIndex Output and Statistics →Running PSI_MI_TAB_Maker: Added note about table preparation.
- 14:11, 15 March 2010 diff hist +41 Bioscape Result Assessment →Isolating Correct and Incorrect Bioscape Results: Added true positive distinctions.
- 19:17, 10 March 2010 diff hist +3,089 Bioscape Result Assessment Added BioCreative import details.
- 14:14, 10 March 2010 diff hist +95 iRefIndex Output and Statistics →Running BioPSI_Suplimenter to Produce Statistics: Added note about this step being optional for a completed build process.
- 16:32, 9 March 2010 diff hist +374 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Added note about propagating data from the full version when building the free version.
- 16:24, 9 March 2010 diff hist +207 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Added workaround.
- 15:54, 9 March 2010 diff hist +13,474 N Statistics iRefIndex free 7.0 Tentative statistics export.
- 11:56, 9 March 2010 diff hist -341 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Simplified Eutils advice.
- 14:57, 1 March 2010 diff hist +70 iRefIndex Build Process →BioGrid: Used a generic filename.
- 11:47, 1 March 2010 diff hist -9 iRefIndex Build Process →BioGrid: Changed ORGANISM to ALL.
- 18:48, 25 February 2010 diff hist +1,016 Bioscape Methods Added filtering and scoring notes.
- 14:01, 25 February 2010 diff hist +1,449 iRefIndex Build Process Added post-parsing validation measures, notes about free/excluded data sources. Removed CORUM preprocessing note.
- 12:44, 25 February 2010 diff hist +53 iRefIndex Build Process →Manual loading of data: Tidied formatting.
- 14:31, 22 February 2010 diff hist +273 iRefIndex Build Process →Running SaxValidator: Added notes about invalid files.
- 19:42, 18 February 2010 diff hist -688 iRefIndex Build Process →Running StaxPSIXML: The CORUM-specific fix does not seem to be necessary on the recently downloaded file.
- 18:11, 18 February 2010 diff hist 0 m iRefIndex Build Process Changed dates and date formats.
- 14:17, 18 February 2010 diff hist +427 iRefIndex Build Process →Fill Bind info: Added notes about the "Base loc" and "Date info" fields.
- 14:03, 18 February 2010 diff hist +579 iRefIndex Build Process →Manual Downloads: Added notes about BIND Translation.
- 16:40, 17 February 2010 diff hist +802 iRefIndex Build Process Added build instructions. Made separate build/running sections.
- 16:22, 17 February 2010 diff hist +1 iRefIndex Build Process →Validation and integrity checks: Changed formatting and date format.
- 14:04, 17 February 2010 diff hist +288 Text Mining Resources Added NLTK-related resources, Wikipedia pronoun page link. current
- 13:59, 17 February 2010 diff hist +1,480 N iRefIndex Maintenance Added a page about maintenance issues.
- 13:41, 17 February 2010 diff hist +28 iRefIndex Manual Added link to a new page.
- 16:55, 16 February 2010 diff hist 0 iRefIndex Release Process Moved feedback section.
- 15:29, 16 February 2010 diff hist -5 iRefIndex Build Process →Building SHA: Changed output directory.
- 16:22, 12 February 2010 diff hist +896 Bioscape Tokenisation →Adopting "Lossy" Tokenisation: Added notes on suitable filtering of tokens.
- 15:30, 12 February 2010 diff hist +1,461 Bioscape Tokenisation Added more details of the different potential tokenisation approaches.
- 18:51, 11 February 2010 diff hist +16 Sources and Issues Next Release →Interaction related resources: Fixed/added dates.
- 14:51, 11 February 2010 diff hist +25 Sources and Issues Next Release →Interaction related resources: Updated versions and dates.
- 14:14, 11 February 2010 diff hist +118 Sources and Issues Next Release →Sequence related resources: Updated versions and dates.
- 14:39, 10 February 2010 diff hist +468 Bioscape Searching →Selecting Search Resources: Added a note about stop word-based terms.
- 18:23, 9 February 2010 diff hist +68 iRefIndex Build Process →Downloading the Source Data: Adjustments to the source lists.
- 12:33, 9 February 2010 diff hist +3 iRefIndex Build Process →DIP: Fixed filename.
- 18:49, 8 February 2010 diff hist 0 iRefIndex Build Process →MIPS: Fixed pathname in example.
- 17:30, 8 February 2010 diff hist +52 iRefIndex Build Process →OPHID: Added deprecation note.
- 17:29, 8 February 2010 diff hist -97 iRefIndex Build Process →I2D: Fixed commands for specific filename details.
- 17:11, 8 February 2010 diff hist +674 iRefIndex Build Process →Manual Downloads: Added I2D section.
- 15:21, 8 February 2010 diff hist +124 Text Mining Resources
- 12:29, 4 February 2010 diff hist +115 Text Mining Resources
- 19:27, 29 January 2010 diff hist +234 Text Mining Resources
- 19:24, 29 January 2010 diff hist +368 Text Mining Resources
- 16:56, 26 January 2010 diff hist +1,232 N Displaying Bioscape Search Results Initial notes.
- 16:45, 26 January 2010 diff hist +42 Bioscape Manual Added link to a new page.
- 13:15, 26 January 2010 diff hist -260 iRefIndex Build Process Updated the instructions, removed FTPtransfer modification step, added data directory argument.
- 10:51, 26 January 2010 diff hist -14 m README iRefIndex expanded MITAB proposal →Understanding the iRefIndex MITAB format: Fixed formatting, or at least prevented weird list construction.
- 18:23, 21 January 2010 diff hist +827 Bioscape Web Resources Added templates.
- 16:15, 21 January 2010 diff hist +674 iRefScape 0.6 Added font rendering tip, distribution package details.
- 13:53, 21 January 2010 diff hist +290 Text Mining Resources →Text Search Resources: Added PMC open access resource information.
- 13:47, 21 January 2010 diff hist +133 Text Mining Resources →Text Search Resources: Added BioMed Central information.
- 16:20, 20 January 2010 diff hist +28 iRefScape 0.6 →Windows Vista and Windows XP: Minor formatting changes.
- 14:50, 20 January 2010 diff hist +114 iRefScape 0.6 →Usage: Added dialogues. Reordered sections, introducing advanced mode first.
- 13:47, 20 January 2010 diff hist 0 File:IRefIndex-Cytoscape-Advanced.png uploaded a new version of "Image:IRefIndex-Cytoscape-Advanced.png": The iRefIndex plugin panel in advanced mode. current
- 13:46, 20 January 2010 diff hist +44 N File:IRefIndex-Cytoscape-Advanced.png The iRefIndex plugin panel in advanced mode.
- 13:41, 20 January 2010 diff hist +216 iRefScape 0.6 →Usage: Moved images around, edited the wording.
- 13:18, 20 January 2010 diff hist +355 iRefScape 0.6 →Usage: Added dialogues.
- 12:59, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step5.png Step 5 of the iRefIndex plugin wizard. current
- 12:59, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step4.png Step 4 of the iRefIndex plugin wizard. current
- 12:58, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step3.png Step 3 of the iRefIndex plugin wizard. current
- 12:57, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Wizard-step2.png Step 2 of the iRefIndex plugin wizard. current
- 12:55, 20 January 2010 diff hist +37 N File:IRefIndex-Cytoscape-Wizard.png The iRefIndex plugin wizard dialogue. current
- 12:53, 20 January 2010 diff hist +57 iRefScape 0.6 Added breaks in the formatting. Moved some images around. Minor edits.
- 12:43, 20 January 2010 diff hist +265 iRefScape 0.6 →Completing the installation: Added dialogues.
- 12:42, 20 January 2010 diff hist 0 File:IRefIndex-Cytoscape-Success.png uploaded a new version of "Image:IRefIndex-Cytoscape-Success.png": A successful iRefIndex plugin installation. current
- 12:39, 20 January 2010 diff hist +50 N File:IRefIndex-Cytoscape-Success.png A successful installation of the iRefIndex plugin.
- 12:36, 20 January 2010 diff hist +39 N File:IRefIndex-Cytoscape-Download.png The iRefIndex plugin download dialogue. current
- 12:35, 20 January 2010 diff hist +44 N File:IRefIndex-Cytoscape-Location.png The iRefIndex plugin data location dialogue. current
- 12:32, 20 January 2010 diff hist +249 iRefScape 0.6 →Using Cytoscape plugin manager: Added dialogues.
- 12:28, 20 January 2010 diff hist +40 N File:IRefIndex-Cytoscape-Bookmark-manager.png The Cytoscape Bookmark manager dialogue. current
- 12:28, 20 January 2010 diff hist +45 N File:IRefIndex-Cytoscape-Plugin-Download-Sites.png The Cytoscape Plugin Download Sites dialogue. current
- 12:27, 20 January 2010 diff hist +38 N File:IRefIndex-Cytoscape-Manage-Plugins.png The Cytoscape Manage Plugins dialogue. current
- 12:23, 20 January 2010 diff hist +312 iRefScape 0.6 →Using Cytoscape plugin manager: Added uninstall notes.
- 12:24, 19 January 2010 diff hist +279 Text Mining Resources
- 16:31, 18 January 2010 diff hist +164 Text Mining Resources
- 19:48, 18 December 2009 diff hist +1,259 Bioscape Tokenisation Added gene keyword-related note.
- 18:05, 16 December 2009 diff hist +867 Bioscape Scoring Techniques →Assuming the Presence of Gene Symbols: Added gene summary-related example.
- 17:58, 16 December 2009 diff hist +1,039 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Added awkward acronym detection case.
- 17:43, 16 December 2009 diff hist +935 Bioscape Scoring Techniques Added example involving gene symbol assertions.
- 15:26, 15 December 2009 diff hist +43 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Moved example and tagged it with a method.
- 15:31, 14 December 2009 diff hist +1,275 Bioscape Scoring Techniques Added disqualifier-related techniques.
- 14:20, 14 December 2009 diff hist +1,129 Bioscape Scoring Techniques Added an example of parentheses-related scoring.
- 14:05, 14 December 2009 diff hist +1,123 Bioscape Searching Techniques →Bioentity Inference: Added another example.
- 13:56, 14 December 2009 diff hist +94 Bioscape Scoring Techniques →PubMed #7512734: Updated the example given newer results.
- 13:51, 14 December 2009 diff hist +2,550 Bioscape Searching Techniques Added more examples.
- 13:33, 14 December 2009 diff hist +689 Bioscape Searching Techniques Added bioentity-specific example.
- 17:20, 9 December 2009 diff hist +474 N Bioinformatics Data Resources New page: * [http://jura.wi.mit.edu/entrez_gene/entrezgene.html Entrez Gene Database Description and Files] - scripts and a schema for parsing Entrez Gene data and populating a database * [http://en... current
- 16:13, 9 December 2009 diff hist +36 Bioscape Manual Added new document.
- 16:13, 9 December 2009 diff hist +1,198 N DiG: Disease groups/Bioscape Notes New page: Some notes related to disease groups and Bioscape. ---- Possible MeSH terms: * Fanconi Anemia Search for FANCD2 and "Fanconi Anemia": * [http://bioscape.uio.no/cgi-bin/bsweb.cgi/quali...
- 17:50, 7 December 2009 diff hist +436 Bioscape Tokenisation Added example issue.
- 19:31, 4 December 2009 diff hist +2,370 Bioscape Searching Techniques Added possible synonym definition technique.
- 18:36, 4 December 2009 diff hist +1,697 Bioscape Scoring Techniques →Acronym Mentions and Techniques: Added disambiguation techniques.
- 16:05, 4 December 2009 diff hist +11 m Bioscape Searching Techniques →PubMed #10484778: Fixed quoted text in table.
- 17:59, 3 December 2009 diff hist +1,470 Bioscape Searching Techniques Added more examples.
- 17:41, 3 December 2009 diff hist +37 Bioscape Manual Added link to new page.
- 17:41, 3 December 2009 diff hist +3,359 N Bioscape Searching Techniques New page: A number of searching techniques are applied to find textual mentions of entities or concepts, particularly those where the nature of the searching is speculative, meaning that no predefin...
- 15:07, 3 December 2009 diff hist 0 m Bioscape Manual Moved development link.
- 15:18, 2 December 2009 diff hist +136 Bioscape Development →Adding New Search Result Types: Added Web translations note.