User contributions
From irefindex
- 14:08, 6 April 2011 diff hist -32 MediaWiki:Sidebar Attempted to add links to other services, removing redundant links.
- 12:18, 5 April 2011 diff hist +21 PSICQUIC Web Services for iRefIndex Changed host name.
- 15:34, 30 March 2011 diff hist +107 PSICQUIC Web Services for iRefIndex Added PSISCORE URLs. Minor formatting changes.
- 10:52, 29 March 2011 diff hist -2 m Donaldson Group →Courses: Test edit.
- 09:45, 28 March 2011 diff hist +17 README MITAB2.6 for iRefIndex 8.0 →Column number: 15 (confidence): Fixed formatting.
- 17:08, 21 March 2011 diff hist +134 DrugBank MITAB2.6 File Format →Format Summary: Updated the taxonomy description and adjusted the formatting.
- 17:04, 21 March 2011 diff hist -232 Donaldson Group →Local Seminar Series: Removed specific seminar details and updated links.
- 16:51, 21 March 2011 diff hist -52 m Bioseminar Removed specific details of the seminars.
- 18:39, 17 March 2011 diff hist +606 iRefIndex MITAB2.6 Parser →Notes on the Populated Database: Added interaction RIG tables and some notes about interactor identifiers.
- 18:31, 17 March 2011 diff hist 0 N File:mitab-2011-03-17.tar.bz2 current
- 18:30, 17 March 2011 diff hist 0 iRefIndex MITAB2.6 Parser →Obtaining the MITAB Parser: Added new snapshot.
- 15:44, 11 March 2011 diff hist +3 README MITAB2.6 for iRefIndex 8.0 →Column number: 52 (imex_id): Fixed example.
- 14:26, 23 February 2011 diff hist +8 iRefWeb LinkOut Generator →Obtaining the Generator: Fixed filename. current
- 14:25, 23 February 2011 diff hist +57 N File:iRefWeb-LinkOut-2011-02-23.tar.bz2 The 2011-02-23 snapshot of the iRefWeb LinkOut generator. current
- 14:24, 23 February 2011 diff hist -9 iRefWeb LinkOut Generator →Obtaining the Generator: Changed filename.
- 14:19, 23 February 2011 diff hist +1,328 N iRefWeb LinkOut Generator Added a page about iRefWeb and LinkOut.
- 14:13, 23 February 2011 diff hist -335 iRefIndex MITAB2.6 Parser →Obtaining the MITAB Parser: Reference an uploaded file.
- 14:08, 23 February 2011 diff hist +54 N File:mitab-2011-02-23.tar.bz2 The 2011-02-23 snapshot of the iRefIndex MITAB parser. current
- 17:52, 22 February 2011 diff hist +1,399 DrugBank MITAB2.6 File Format Changed DrugBank to drugbank and InChIKey to inchikey for general consistency. Added the remaining columns.
- 13:47, 15 February 2011 diff hist -71 m iRefIndex Videos Reverted edits by PaulBoddie (Talk) to last revision by Ian.donaldson current
- 13:23, 15 February 2011 diff hist +71 iRefIndex Videos Test with MediawikiPlayer extension.
- 13:25, 11 February 2011 diff hist +113 DrugBank MITAB2.6 File Format →Format Summary: Added biological role A.
- 14:10, 8 February 2011 diff hist +1,298 DrugBank MITAB2.6 File Format →Format Summary: Added columns.
- 18:25, 31 January 2011 diff hist +203 DrugBank MITAB2.6 File Format →Format Summary: Fixed protein alias source, added an example column.
- 17:47, 31 January 2011 diff hist +1,111 DrugBank MITAB2.6 File Format →Format Summary: Added sources, more fields.
- 19:05, 27 January 2011 diff hist +672 DrugBank MITAB2.6 File Format Added field descriptions.
- 16:08, 27 January 2011 diff hist +1,033 N DrugBank MITAB2.6 File Format Added initial description.
- 18:20, 17 January 2011 diff hist +129 iRefIndex Maintenance Added some resources of peripheral interest.
- 16:37, 21 December 2010 diff hist +104 iRefIndex Build Process →Recreate SEGUID: Added note.
- 14:41, 21 December 2010 diff hist +493 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Added SEGUID Manipulator.
- 17:13, 1 December 2010 diff hist +89 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Added Canonical_Mapper.
- 17:04, 1 December 2010 diff hist -5 m iRefIndex Build Process →Running BioPSI_Suplimenter: Change .jar path.
- 10:07, 30 November 2010 diff hist +128 iRefIndex Output and Statistics →Running PSI_MI_TAB_Maker: Added taxid2name statements.
- 16:46, 29 November 2010 diff hist +97 iRefIndex Release Process →Testing the Output: Added link to new page.
- 16:50, 11 November 2010 diff hist +111 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Extended workaround.
- 15:42, 5 November 2010 diff hist +936 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Added Eutils-related notes.
- 17:06, 2 November 2010 diff hist +1 iRefIndex MITAB2.6 Parser →Prerequisites: Updated versions.
- 15:00, 28 October 2010 diff hist +1,289 iRefIndex Build Process →Validating the Results from iRef_PSI_XML2RDBMS: Added notes about problems with the parsed data.
- 12:37, 28 October 2010 diff hist +268 iRefIndex Build Process →Validating the Results from iRef_PSI_XML2RDBMS: Added source2object queries.
- 13:44, 27 October 2010 diff hist +192 README iRefIndex expanded MITAB proposal Added deprecation note. current
- 13:35, 27 October 2010 diff hist +27 m iRefIndex MITAB2.6 Parser Minor formatting changes.
- 13:33, 27 October 2010 diff hist +254 iRefIndex MITAB2.5 Parser Added status note.
- 13:29, 27 October 2010 diff hist 0 m README iRefIndex MITAB experiment proposal for 7.0 moved README MITAB experiment proposal for iRefIndex 7.0 to README iRefIndex MITAB experiment proposal for 7.0: Fixed the name of the page. current
- 13:29, 27 October 2010 diff hist +64 N README MITAB experiment proposal for iRefIndex 7.0 moved README MITAB experiment proposal for iRefIndex 7.0 to README iRefIndex MITAB experiment proposal for 7.0: Fixed the name of the page. current
- 13:28, 27 October 2010 diff hist 0 m README iRefIndex MITAB experiment proposal for 7.0 moved README iRefIndex experiment MITAB 7.0 to README MITAB experiment proposal for iRefIndex 7.0: The page describes an obsolete format.
- 13:28, 27 October 2010 diff hist +64 N README iRefIndex experiment MITAB 7.0 moved README iRefIndex experiment MITAB 7.0 to README MITAB experiment proposal for iRefIndex 7.0: The page describes an obsolete format. current
- 13:27, 27 October 2010 diff hist +435 README iRefIndex MITAB experiment proposal for 7.0 Added deprecation note.
- 15:44, 25 October 2010 diff hist +13 README MITAB2.6 for iRefIndex 7.0 →Column number: 1 (uidA): Minor formatting edit. current
- 15:42, 25 October 2010 diff hist -427 iRefIndex MITAB2.6 Parser Updated the description of the software.
- 15:24, 25 October 2010 diff hist +12 iRefIndex Build Process →Validating the Results from iRef_PSI_XML2RDBMS: Added missing name columns to certain queries.
- 15:14, 21 October 2010 diff hist +1,016 iRefIndex Build Process →Validating the Results from iRef_PSI_XML2RDBMS: Added undefined value queries.
- 12:20, 19 October 2010 diff hist +238 README iRefIndex MITAB2.6 proposal for 7.0 Added status note, updated release details. current
- 11:55, 19 October 2010 diff hist 0 m README iRefIndex MITAB2.6 proposal for 7.0 moved README iRefIndex MITAB2.6 7.0 to README iRefIndex MITAB2.6 proposal for 7.0: This is no longer relevant.
- 11:55, 19 October 2010 diff hist +56 N README iRefIndex MITAB2.6 7.0 moved README iRefIndex MITAB2.6 7.0 to README iRefIndex MITAB2.6 proposal for 7.0: This is no longer relevant. current
- 17:38, 18 October 2010 diff hist +641 README MITAB2.6 for iRefIndex 7.0 Various formatting and wording changes and fixes.
- 14:31, 15 October 2010 diff hist +457 iRefIndex Development →Defining the Database Identifier: Fixed the origin of identifiers.
- 13:24, 15 October 2010 diff hist +984 iRefIndex Development Added database identifier definition.
- 19:00, 14 October 2010 diff hist +77 README MITAB2.6 for iRefIndex 7.0 →Representation of interactions: Fixed formatting, list numbering, some wording.
- 18:37, 14 October 2010 diff hist +565 iRefIndex Build Process →Known Issues: Added BioGRID fix.
- 14:53, 14 October 2010 diff hist -271 iRefIndex Build Process →Known Issues: Switched back to the PSI-MI XML 2.5 version of BioGRID.
- 14:52, 14 October 2010 diff hist +5 Sources iRefIndex 8.0 →Interaction related resources: Fixed BioGRID reference.
- 13:27, 14 October 2010 diff hist -3 iRefIndex Build Process →Running the Program: Changed the execution method.
- 13:10, 14 October 2010 diff hist +497 iRefIndex Build Process →Known Issues: Updated the issues with observations from iRefIndex 8.0.
- 12:23, 14 October 2010 diff hist +161 iRefIndex Build Process →Running iRef_PSI_XML2RDBMS: Changed the formatting, added new data sources, changed source removal (adding, not removing # characters).
- 14:10, 13 October 2010 diff hist +161 iRefIndex Build Process →MIPS: Introduced a separate MPACT directory.
- 14:02, 13 October 2010 diff hist 0 iRefIndex Build Process Changed BioGrid to BioGRID.
- 10:22, 13 October 2010 diff hist +364 iRefIndex Build Process →Creating the Database: Added more restrictive grant statements.
- 17:03, 12 October 2010 diff hist +8 m iRefIndex Build Process →Validating the Results from StaxPSIXML: Changed the module name.
- 17:01, 12 October 2010 diff hist +2,376 iRefIndex Development →Adapting an Existing Mapper File: Added notes about different data origins.
- 16:37, 12 October 2010 diff hist +18,772 iRefIndex Development →Evaluating the Data: Updated the data structure output. Added MatrixDB.
- 14:37, 11 October 2010 diff hist +4,929 iRefIndex Development Added notes about adapting mapper files.
- 11:33, 11 October 2010 diff hist -1,991 iRefIndex Development →Reviewing Mapper Files: Updated output.
- 14:11, 8 October 2010 diff hist +91 iRefIndex Development →Evaluating the Data: Added InnateDB observations.
- 18:11, 7 October 2010 diff hist +8,416 iRefIndex Development →Adding Sources to iRefIndex: Updated the script invocation and added an explanation of the output.
- 16:10, 1 October 2010 diff hist +5,155 iRefIndex Development →Adding Sources to iRefIndex: Added description of XML element path analysis.
- 14:11, 1 October 2010 diff hist +319 iRefIndex Build Process →Running StaxPSIXML: Introduced iRef_PSI_XML2RDBMS references and described the convenience script.
- 14:01, 1 October 2010 diff hist -55 iRefIndex Build Process →Building StaxPSIXML: Introduced references to iRef_PSI_XML2RDBMS.
- 16:29, 30 September 2010 diff hist 0 m iRefIndex Build Process →BioGrid: Capitalisation changes.
- 14:04, 30 September 2010 diff hist +643 Gene Ontology similarity measurement Added concept comparison notes.
- 13:22, 30 September 2010 diff hist +182 iRefIndex Build Process →Clone seguid: Added a note about updating from a newer seguidannotation file. Modified the wording.
- 17:06, 28 September 2010 diff hist +3,367 N Gene Ontology similarity measurement Some initial notes.
- 16:21, 28 September 2010 diff hist +23 m DiG: Disease groups/Bioscape Notes Added category. current
- 16:15, 24 September 2010 diff hist +16 m iRefIndex Build Process →Running BioPSI_Suplimenter: Qualify the initial statement.
- 16:14, 24 September 2010 diff hist +195 iRefIndex Build Process →Manual loading of data: Added maintenance note.
- 15:54, 23 September 2010 diff hist +19 Sources iRefIndex 8.0 Added InnateDB details, removed OPHID.
- 15:54, 23 September 2010 diff hist +482 iRefIndex Build Process →Manual Downloads: Added InnateDB details.
- 15:32, 23 September 2010 diff hist +72 Sources iRefIndex 8.0 Updated MINT, Intact (probably unchanged, timestamp adjusted), NCBI resources.
- 16:08, 21 September 2010 diff hist +539 iRefIndex Build Process →Running SaxValidator: Added xmllint notes.
- 13:08, 21 September 2010 diff hist -16 iRefIndex Build Process →Running BioPSI_Suplimenter: Tidied the link to the previous section.
- 12:56, 21 September 2010 diff hist -16 Sources iRefIndex 8.0 →Sequence related resources: Changed SEGUID details, although the actual contents of seguidannotation is unchanged from the previous release.
- 11:04, 21 September 2010 diff hist +99 iRefIndex Build Process Updated the sources link and added a note about SEGUID.
- 16:55, 20 September 2010 diff hist +111 Sources iRefIndex 8.0 →Sequence related resources: Updated UniProt details.
- 16:16, 20 September 2010 diff hist +987 iRefIndex Build Process Added Ant installation information.
- 15:57, 20 September 2010 diff hist -99 iRefIndex Build Process Tidied formatting.
- 15:51, 20 September 2010 diff hist -43 iRefIndex Build Process →Building FTPtransfer: Tidied formatting.
- 11:39, 15 September 2010 diff hist +167 Sources iRefIndex 8.0 →Interaction related resources: Updated DIP, added MatrixDB, MPIDB, InnateDB details.
- 08:55, 15 September 2010 diff hist -71 m Bioinformatics course Removed weird "skype highlighting" text.
- 16:49, 14 September 2010 diff hist -4 Sources iRefIndex 8.0 →Interaction related resources: Updated I2D details.
- 16:08, 14 September 2010 diff hist +1 Sources iRefIndex 8.0 →Interaction related resources: Updated HPRD, removing the trailing / which upsets their site.
- 12:54, 14 September 2010 diff hist +10 Sources iRefIndex 8.0 →Interaction related resources: Tidied, fixed and confirmed BIND Translation details. Updated BioGRID details.