User contributions
From irefindex
- 15:13, 14 July 2011 diff hist +32 N File:2011-07-14-iRefScape-180x180.png An example graph from iRefScape. current
- 15:12, 14 July 2011 diff hist +32 N File:2011-07-14-iRefScape-100x100.png An example graph from iRefScape. current
- 14:19, 14 July 2011 diff hist -2 m iRefScape 1.0 →Questions and answers about list comparison: "appears"
- 11:36, 14 July 2011 diff hist +406 iRefIndex Build Process →Make Cy tables (canonical): Added database script details.
- 16:27, 13 July 2011 diff hist -5 m iRefScape 1.0 Added the release date.
- 16:27, 13 July 2011 diff hist 0 iRefScape Updated the redirect. current
- 13:58, 13 July 2011 diff hist -45 m iRefScape Test Cases 1.0 →Not currently tested: Iterations and canonical expansion are generally tested.
- 17:47, 11 July 2011 diff hist +20,563 N Statistics iRefIndex 9.0 Added a tentative page for iRefIndex 9.0.
- 14:49, 11 July 2011 diff hist 0 iRefIndex Build Process Changed ordering.
- 12:03, 8 July 2011 diff hist +200 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Added required steps.
- 17:02, 7 July 2011 diff hist +10 iRefScape 1.0 →Questions and answers about list comparison: Tidied up slightly.
- 16:29, 6 July 2011 diff hist 0 m iRefScape 0.5 moved README Cytoscape plugin 0.5x to iRefScape 0.5: Simplify the page names. current
- 16:29, 6 July 2011 diff hist +27 N README Cytoscape plugin 0.5x moved README Cytoscape plugin 0.5x to iRefScape 0.5: Simplify the page names. current
- 16:28, 6 July 2011 diff hist 0 m iRefScape 0.6 moved README Cytoscape plugin 0.6x to iRefScape 0.6: Simplify the page names. current
- 16:28, 6 July 2011 diff hist +27 N README Cytoscape plugin 0.6x moved README Cytoscape plugin 0.6x to iRefScape 0.6: Simplify the page names. current
- 16:28, 6 July 2011 diff hist 0 m iRefScape 0.7 moved README Cytoscape plugin 0.7x to iRefScape 0.7: Simplify the page names. current
- 16:28, 6 July 2011 diff hist +27 N README Cytoscape plugin 0.7x moved README Cytoscape plugin 0.7x to iRefScape 0.7: Simplify the page names. current
- 16:26, 6 July 2011 diff hist 0 m iRefScape Test Cases 1.0 moved Plugin test cases 1.0x to iRefScape Test Cases 1.0: Simplify the page name.
- 16:26, 6 July 2011 diff hist +38 N Plugin test cases 1.0x moved Plugin test cases 1.0x to iRefScape Test Cases 1.0: Simplify the page name. current
- 16:25, 6 July 2011 diff hist -962 iRefScape 1.0 Updated links, revealed dig_title, removed commented-out text related to batch files.
- 16:18, 6 July 2011 diff hist -248 iRefScape 0.8 Updated links. current
- 16:13, 6 July 2011 diff hist -119 iRefScape 0.9 Updated links. current
- 16:09, 6 July 2011 diff hist 0 m iRefScape 1.0 Installation moved README Cytoscape plugin 1.0x Installation to iRefScape 1.0 Installation: Simplify the page names.
- 16:09, 6 July 2011 diff hist +40 N README Cytoscape plugin 1.0x Installation moved README Cytoscape plugin 1.0x Installation to iRefScape 1.0 Installation: Simplify the page names. current
- 16:09, 6 July 2011 diff hist 0 m iRefScape 0.8 Installation moved README Cytoscape plugin 0.8x Installation to iRefScape 0.8 Installation: Simplify the page names. current
- 16:09, 6 July 2011 diff hist +40 N README Cytoscape plugin 0.8x Installation moved README Cytoscape plugin 0.8x Installation to iRefScape 0.8 Installation: Simplify the page names. current
- 16:07, 6 July 2011 diff hist -509 iRefIndex →iRefScape: Data availability via Cytoscape: Replaced the redundant content with a link to the iRefScape page.
- 15:59, 6 July 2011 diff hist 0 m iRefScape moved README Cytoscape plugin to iRefScape: Simplify the page names.
- 15:59, 6 July 2011 diff hist +23 N README Cytoscape plugin moved README Cytoscape plugin to iRefScape: Simplify the page names.
- 15:59, 6 July 2011 diff hist -15 iRefScape Changed the redirect.
- 15:58, 6 July 2011 diff hist 0 m iRefScape 0.8 moved README Cytoscape plugin 0.8x to iRefScape 0.8: Simplify the page names.
- 15:58, 6 July 2011 diff hist +27 N README Cytoscape plugin 0.8x moved README Cytoscape plugin 0.8x to iRefScape 0.8: Simplify the page names. current
- 15:58, 6 July 2011 diff hist 0 m iRefScape 0.9 moved README Cytoscape plugin 0.9x to iRefScape 0.9: Simplify the page names.
- 15:58, 6 July 2011 diff hist +27 N README Cytoscape plugin 0.9x moved README Cytoscape plugin 0.9x to iRefScape 0.9: Simplify the page names. current
- 15:57, 6 July 2011 diff hist 0 m iRefScape 1.0 moved README Cytoscape plugin 1.0x to iRefScape 1.0: Simplify the page names.
- 15:57, 6 July 2011 diff hist +27 N README Cytoscape plugin 1.0x moved README Cytoscape plugin 1.0x to iRefScape 1.0: Simplify the page names. current
- 15:48, 6 July 2011 diff hist +235 iRefScape 1.0 Changed various links, adding links to the batch files page.
- 15:45, 6 July 2011 diff hist 0 m iRefScape plugin menu moved README Cytoscape plugin menu to iRefScape plugin menu: Using the actual name of the plugin. This makes it easier to find the page in the category, too. current
- 15:45, 6 July 2011 diff hist +35 N README Cytoscape plugin menu moved README Cytoscape plugin menu to iRefScape plugin menu: Using the actual name of the plugin. This makes it easier to find the page in the category, too. current
- 15:41, 6 July 2011 diff hist +7,110 N iRefScape Batch Files Moved batch search information to another page. current
- 15:29, 6 July 2011 diff hist -6,958 iRefScape plugin menu Moved batch search information to another page.
- 14:32, 6 July 2011 diff hist +789 iRefScape plugin menu →iRefScape user searchable index: Added a template and reworded.
- 14:13, 6 July 2011 diff hist 0 m iRefScape plugin menu →iRefScape search with batch file: Replaced spaces with tabs in the template.
- 13:51, 6 July 2011 diff hist +216 iRefScape plugin menu →iRefScape search with batch file: Formatted the note and added information about viewing the new attributes.
- 13:22, 6 July 2011 diff hist +170 iRefScape plugin menu →Attributes in batch files: Fixed the list, added a format template.
- 13:19, 6 July 2011 diff hist +352 iRefScape plugin menu →Attribute batch file: Tidied up.
- 14:17, 5 July 2011 diff hist +130 iRefScape plugin menu →iRefScape search with batch file: Reworded, tidied.
- 13:09, 5 July 2011 diff hist +12 iRefScape plugin menu →iRefScape user searchable index: Various fixes.
- 17:17, 4 July 2011 diff hist +46 iRefScape plugin menu →iRefScape user searchable index: Tidied up formatting.
- 17:14, 4 July 2011 diff hist +927 iRefScape plugin menu Added a description of the grouping operations.
- 16:57, 4 July 2011 diff hist -539 iRefScape plugin menu Put the user variables section into the "Search tools" menu. Moved the batch file searching section. Various formatting and stylistic edits, plus link fixes.
- 16:23, 4 July 2011 diff hist -1 m iRefScape 1.0 →Toggling Edges: Remove vertical space.
- 16:22, 4 July 2011 diff hist -108 iRefScape 1.0 →Installation: More tidying.
- 16:20, 4 July 2011 diff hist +28 iRefScape 1.0 →Tested systems: Tidied up.
- 16:05, 4 July 2011 diff hist +2,018 iRefScape 1.0 →Advanced search options: Added some brief descriptions of the panels.
- 13:32, 4 July 2011 diff hist +16 MediaWiki:Sidebar Attempt to add main page.
- 13:31, 4 July 2011 diff hist +5 MediaWiki:Sidebar Test modified navigation.
- 18:10, 1 July 2011 diff hist +628 iRefIndex Build Process →Validating the Results from iRef_PSI_XML2RDBMS: Added BIND Translation validation techniques.
- 15:43, 30 June 2011 diff hist -22 iRefIndex Build Process →Potential Problems: Removed version-specific reference.
- 15:42, 30 June 2011 diff hist +14 iRefIndex Build Process →Potential Problems: Tidied up the formatting.
- 18:21, 29 June 2011 diff hist +308 iRefIndex Build Process →Creating taxid2name table: Added unpacking commands.
- 18:10, 29 June 2011 diff hist +858 iRefIndex Build Process Added an MPIDB section.
- 18:01, 29 June 2011 diff hist -216 Sources and Issues Next Release →MPIDB: Updated the MPIDB MITAB notes.
- 15:37, 29 June 2011 diff hist +69 iRefIndex MITAB Mapping Added link to external specification. current
- 16:55, 27 June 2011 diff hist -53 iRefScape Test Cases 1.0 →Search cases: Updated the OMIM case.
- 11:28, 27 June 2011 diff hist +136 iRefIndex Build Process →Manual loading of data: Fixed SEGUID notes.
- 18:36, 24 June 2011 diff hist +188 iRefScape Test Cases 1.0 →Search cases: Added dig_title search result.
- 12:06, 24 June 2011 diff hist +348 iRefIndex Build Process →Recreate SEGUID: Updated the note and information about files.
- 11:31, 23 June 2011 diff hist +193 iRefIndex Build Process →Clone seguid: Formatted and tidied up, adding some database commands.
- 11:05, 23 June 2011 diff hist +112 m iRefIndex Build Process →Create tables: Reformatted, tidied up.
- 15:58, 21 June 2011 diff hist +1,130 iRefIndex Output and Statistics Changed the MITAB generation process to include SQL script usage.
- 15:07, 21 June 2011 diff hist +6 iRefIndex Output and Statistics →Running PSI_MI_TAB_Maker: Added program arguments.
- 15:05, 21 June 2011 diff hist -781 iRefIndex Output and Statistics →Building PSI_MI_TAB_Maker: Parameterised the program, removing source code modifications.
- 14:09, 21 June 2011 diff hist -5 iRefIndex Output and Statistics →Creating a Mapping Wiki Page: Fixed CVS checkout.
- 15:51, 20 June 2011 diff hist +184 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Extended workaround.
- 12:27, 20 June 2011 diff hist +81 iRefIndex Build Process →Creating taxid2name table: Tidied formatting.
- 12:03, 17 June 2011 diff hist +5 m iRefIndex Build Process →Running BioPSI_Suplimenter: Changed the .jar location.
- 13:53, 16 June 2011 diff hist +4 m Sources and Issues Next Release →Interaction related resources: Fixed name.
- 12:28, 16 June 2011 diff hist +459 iRefIndex Build Process →Known Issues: Added BIND Translation fix.
- 12:23, 16 June 2011 diff hist +235 Sources and Issues Next Release Added BIND Translation issue (which was probably already reported).
- 16:33, 15 June 2011 diff hist +55 Sources and Issues Next Release →Sequence related resources (not updated yet): Added release numbers and dates.
- 09:25, 15 June 2011 diff hist -1,653 iRefIndex MITAB Mapping Removed lower table, added category tag.
- 17:03, 14 June 2011 diff hist +115 Sources and Issues Next Release Added redirect page note.
- 17:00, 14 June 2011 diff hist 0 m Sources iRefIndex Fixed version numbering.
- 17:00, 14 June 2011 diff hist +35 N Sources iRefIndex Added a general sources page.
- 16:58, 14 June 2011 diff hist -1,323 iRefIndex Build Process →Manual Downloads: Removed UniProt which is now downloaded by FTPtransfer. Added general sources link.
- 16:54, 14 June 2011 diff hist +939 iRefIndex Build Process →Manual Downloads: Tidied, added MatrixDB.
- 16:54, 14 June 2011 diff hist +3 Sources and Issues Next Release →Interaction related resources: Updated. Fixed the HPRD link again. Changed date formats.
- 16:36, 14 June 2011 diff hist +862 iRefIndex Build Process →MIPS: Added MPIDB section.
- 16:30, 14 June 2011 diff hist +101 m iRefIndex Build Process →InnateDB: Added note.
- 15:58, 14 June 2011 diff hist +274 iRefIndex Build Process →BIND Translation: Updated URLs, commands.
- 13:14, 11 June 2011 diff hist 0 m iRefIndex Build Process →Build Dependencies: Updated ant version.
- 18:18, 10 June 2011 diff hist +247 iRefIndex MITAB Mapping Attempt to incorporate summary table details into the mapping table. Not sure about the interactionType, however.
- 15:06, 10 June 2011 diff hist +82 iRefIndex MITAB Mapping Added int_xref.dbid for interactionType, interactionIdentifiers.
- 14:15, 10 June 2011 diff hist +2,273 N iRefIndex MITAB Mapping Attempt to document the MITAB format in terms of the iRefIndex schema.
- 11:39, 10 June 2011 diff hist +53 iRefIndex Development →Adding Sources to iRefIndex: Added a link to a new document.
- 12:21, 6 June 2011 diff hist +52 m Sources and Issues Next Release →Interaction related resources: Fixed table.
- 22:37, 30 May 2011 diff hist +36 iRefScape 1.0 →Installation: Updated link to point to new page.
- 22:35, 30 May 2011 diff hist +15,776 N iRefScape 1.0 Installation Make a new version of the page. Added Debian/Ubuntu Java packaging notes.
- 22:28, 30 May 2011 diff hist -27 m iRefScape 0.9 →Installation: Change the link to be local.