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  • Supported Data Sources
    {{Note|Note usage of gene information, products, summaries, references.|To do}} {{Note|Note usage of gene annotations of PubMed documents.|To do}}
    551 bytes (76 words) - 13:41, 14 July 2010
  • Bioscape Status
    {{Note|Please note that this documentation covers an unreleased product and is for internal us
    103 bytes (16 words) - 13:35, 14 July 2010
  • File:Example.jpg
    Note: This image is used as the example image when you use the edit toolbar (Eng
    605 bytes (93 words) - 15:18, 5 June 2009
  • iRefIndex Manual
    '''Please note that this documentation covers an unreleased software product and is for in
    441 bytes (56 words) - 14:41, 9 April 2010
  • Protein identifier mapping
    ...Seq identifiers; for other identifiers the value is -1 for this field. See note 1. ...acid sequence with the NCBI taxonomy identifier appended at the end). See note 2.
    3 KB (375 words) - 17:07, 14 March 2013
  • PSICQUIC Web Services for iRefIndex
    {{Note| Note that only the first 15 columns of the iRefIndex MITAB files are returned fr
    4 KB (589 words) - 17:23, 28 December 2019
  • README template
    Note:
    2 KB (271 words) - 16:16, 6 April 2009
  • Canonicalization
    It is also important to note that not all groups of related proteins are represented using this method. It is important to note that RefSeq protein records represent protein products of specific mRNAs.
    6 KB (981 words) - 16:44, 14 March 2013
  • MNBTS 9000 (2008)
    Please note: ...:SteelBlue; color:white" colspan="4" align="center"| Thursday 16. Oct 2008 Note room change above!!
    7 KB (945 words) - 20:48, 21 October 2008
  • iRefScape Batch Files
    {{Note| Note that if the batch file is also used as a template to construct a user-searc
    7 KB (1,128 words) - 15:41, 6 July 2011
  • iRefScape Test Cases 1.0
    | colspan="5" | '''Note:''' This test is made incredibly difficult current bug in 2.8.1 attribute b | colspan="5" | '''Note:''' P61073-2 and P61073 are isoforms of CXCR4. Searching for P61073-2 actua
    24 KB (3,634 words) - 17:32, 24 November 2011
  • iRefIndex Output and Statistics
    {{Note| {{Note|
    11 KB (1,698 words) - 13:34, 16 February 2012
  • Bioinformatics for molecular biology 2009
    NOTE: The description of the course at http://www.uio.no/studier/emner/matnat/mo Please note:
    16 KB (2,335 words) - 13:27, 3 February 2010
  • README iRefIndex MITAB 6.1
    Note: this distribution includes only those data that may be freely #Please note there will be discrepancies between iRefIndex beat6.0 and iRefWeb. This is
    30 KB (4,458 words) - 14:35, 9 April 2010
  • README iRefIndex MITAB 4.0
    Note: this distribution includes only those data that may be freely Note that column 21 may also contain a C. This indicates that the MITAB entry d
    27 KB (4,108 words) - 10:56, 8 June 2009
  • Bioscape Configuration
    ...on of 8.3 is meant to correspond with the installed version of PostgreSQL. Note that <tt>pg_dropcluster</tt> and <tt>pg_createcluster</tt> are Debian-speci
    5 KB (714 words) - 13:38, 14 July 2010
  • README iRefIndex MITAB 3.0
    Note: this distribution includes only those data that may be freely Note that column 21 may also contain a C. This indicates that the MITAB entry d
    28 KB (4,278 words) - 11:20, 22 April 2009
  • README iRefIndex MITAB 5.0
    Note: this distribution includes only those data that may be freely Note that column 21 may also contain a C. This indicates that the MITAB entry d
    27 KB (4,138 words) - 16:27, 21 August 2009
  • README iRefIndex MITAB 5.1
    Note: this distribution includes only those data that may be freely Note that column 21 may also contain a C. This indicates that the MITAB entry d
    28 KB (4,185 words) - 16:49, 21 August 2009
  • Bioseminar
    ...Factor 2 <br/> (Concurrent with [http://www.biotek.uio.no/MNBTS/ MNBTS]. Note room change.) ...[http://www.biotek.uio.no/PhDschool/ Ph.D. School of Molecular Medicine]. Note room change.)
    9 KB (1,185 words) - 23:06, 24 November 2011
  • README iRefIndex MITAB 7.0
    Note: this distribution includes only those data that may be freely Note that column 21 may also contain a C. This indicates that the MITAB entry d
    29 KB (4,344 words) - 17:16, 18 May 2010
  • README iRefIndex experiment MITAB 5.1
    Note: this distribution includes only those data that may be freely Note that column 21 may also contain a C. This indicates that the MITAB entry d
    29 KB (4,331 words) - 09:14, 25 August 2009
  • iRefIndex Release Notes
    *Note: The data for the PSICQUIC web service will be released end of September 20 *Note: The data for the PSICQUIC web service will be released end of November 202
    18 KB (2,473 words) - 06:15, 29 August 2023
  • README iRefIndex experiment MITAB 6.0
    Note: this distribution includes only those data that may be freely Note that column 21 may also contain a C. This indicates that the MITAB entry d
    29 KB (4,437 words) - 14:36, 9 April 2010
  • iRefIndex Build Process
    {{Note| (Note that the specific file varies from release to release - see the sources pag
    47 KB (7,595 words) - 15:50, 4 October 2011
  • iRefScape 1.0 Installation
    {{Note| Please note that this method does not solve firewall-related issues.
    18 KB (2,800 words) - 20:08, 14 March 2013
  • iRefIndex MITAB2.5 Parser
    {{Note|
    5 KB (720 words) - 14:51, 19 September 2011
  • README MITAB2.6 for iRefIndex 7.0
    {{Note| ...stuff doesn't like external links, so these are not featured in the above note. -->
    51 KB (7,623 words) - 15:44, 25 October 2010
  • iRefIndex Data Preparation for iRefWeb
    {{Note|
    6 KB (1,046 words) - 13:04, 20 October 2011
  • DrugBank MITAB2.6 File Format
    Note that each record describes a drug-drug or drug-protein interaction where th
    6 KB (888 words) - 14:46, 25 August 2011
  • README MITAB2.6 for iRefIndex 8.0
    ...stuff doesn't like external links, so these are not featured in the above note. --> {{Note|Each line in this file represents a single source database record that supp
    49 KB (7,401 words) - 12:34, 17 October 2011
  • README DiG 1.0
    ...tails. All these manual changes can be propagated from release to release. Note that the manual titles are not guaranteed to contain OMIM identifiers and e
    5 KB (771 words) - 09:25, 30 June 2010
  • README iRefIndex MITAB2.6 proposal for 7.0
    {{Note| ...stuff doesn't like external links, so these are not featured in the above note. -->
    54 KB (8,103 words) - 12:20, 19 October 2010
  • Sources iRefIndex 7.0
    | BIND_TRANSLATION||PSI-MI 2.5||**January 8th, 2010(**see note below)||(from archive)
    5 KB (775 words) - 21:28, 20 September 2010
  • Sources iRefIndex 9.0
    <br>Note: date on last IMEx release file is from 2008
    6 KB (826 words) - 11:13, 20 April 2012
  • Example model files for Magrathea
    #complex stoichiometry is a,b,c (note one extra c molecule is left out) #note that we only test for the compartment of the receptor the
    40 KB (4,178 words) - 09:33, 1 April 2010
  • README MITAB2.6 for iRefIndex 9.0
    ...with a specific organism]] are now excluded from organism-specific files. Note that complexes may consist of a number of lines where interactors may have ...IDs mapped to legacy RIGIDs which have been computed for the interactions. Note that many of the legacy RIGIDs may not exist in previous releases of iRefIn
    53 KB (7,933 words) - 10:41, 4 December 2012
  • The Magrathea Manual: Building Coordinated Agent Models
    Note: features and feature-values are not used by Magrathea, but may be used in Note: For the most part, rules should be encoded using Coordinator Rules. Howev
    75 KB (11,015 words) - 13:00, 20 April 2010
  • README MITAB2.6 for iRefIndex 15.0
    {{Note|Each line in this file represents a single source database record that supp {{Note|
    52 KB (7,771 words) - 16:03, 10 March 2018
  • README MITAB2.6 for iRefIndex 16.0
    {{Note|Each line in this file represents a single source database record that supp {{Note|
    52 KB (7,785 words) - 09:48, 9 October 2019
  • README MITAB2.6 for iRefIndex 18.0
    {{Note|Each line in this file represents a single source database record that supp {{Note|
    52 KB (7,774 words) - 10:25, 20 August 2021
  • README MITAB2.6 for iRefIndex 17.0
    {{Note|Each line in this file represents a single source database record that supp {{Note|
    52 KB (7,778 words) - 19:31, 30 June 2020
  • Sources and Issues Next Release
    {{Note| <br>Note: date on last IMEx release file is from 2008
    11 KB (1,675 words) - 11:47, 26 February 2014
  • README MITAB2.6 for iRefIndex 11.0
    {{Note|Each line in this file represents a single source database record that supp {{Note|
    51 KB (7,688 words) - 10:45, 27 May 2013
  • README MITAB2.6 for iRefIndex 12.0
    {{Note|Each line in this file represents a single source database record that supp {{Note|
    52 KB (7,804 words) - 09:47, 21 June 2013
  • iRefIndex MITAB2.6 Parser
    ...<tt>crogid:</tt>) are omitted from interaction and interactor columns. '''Note''' that for non-iRefIndex data, any prefixes other than these will be retai
    6 KB (879 words) - 16:52, 29 November 2011
  • README MITAB2.6 for iRefIndex 10.0
    {{Note|Each line in this file represents a single source database record that supp {{Note|
    52 KB (7,812 words) - 12:00, 5 April 2013
  • README MITAB2.6 for iRefIndex 13.0
    {{Note|Each line in this file represents a single source database record that supp {{Note|
    53 KB (7,878 words) - 10:30, 13 December 2013
  • README MITAB2.6 for iRefIndex 20.0
    {{Note|Each line in this file represents a single source database record that supp {{Note|
    56 KB (8,235 words) - 06:27, 29 August 2023
  • README MITAB2.6 for iRefIndex 19.0
    {{Note|Each line in this file represents a single source database record that supp {{Note|
    56 KB (8,227 words) - 12:11, 9 August 2023
  • iRefScape 0.8 Installation
    #* '''Note''' that you should have write privileges for this directory during installa '''Note:''' If you encounter an exception during Cytoscape's start-up process due t
    15 KB (2,297 words) - 16:09, 6 July 2011
  • README MITAB2.6 for iRefIndex 14.0
    {{Note|Each line in this file represents a single source database record that supp {{Note|
    55 KB (8,209 words) - 09:44, 23 July 2016
  • README iRefIndex MITAB 6.0
    Note: this distribution includes only those data that may be freely *Please note there will be discrepancies between iRefIndex beta 6.0 and iRefWeb. This is
    30 KB (4,488 words) - 12:47, 9 November 2011
  • README iRefIndex MITAB experiment proposal for 7.0
    {{Note| Note: this distribution includes only those data that may be freely
    29 KB (4,420 words) - 13:29, 27 October 2010
  • Bioscape Data Sources
    Note that the underlying infrastructure in the <tt>bioscape.sources</tt> module
    6 KB (979 words) - 13:39, 14 July 2010
  • README iRefIndex MITAB 2.0
    Note: this distribution includes only those data that may be freely Note that column 21 may also contain a C. This indicates that the MITAB entry d
    27 KB (4,008 words) - 15:34, 6 March 2009
  • Bioscape Scoring Techniques
    Note that the above also involves an acronym. Note that the <tt>confirmed_by_competing_names</tt> method also resolves these m
    21 KB (2,669 words) - 13:44, 14 July 2010
  • iRefIndex Maintenance
    {{Note|
    7 KB (1,088 words) - 16:05, 26 October 2012
  • Bioinformatics for molecular biology 2010
    Please note: Please note:
    19 KB (2,793 words) - 22:48, 14 June 2011
  • MBV9100
    | ||Jorrit Enserink ||Note: early lunch ||Reidunn Aalen
    6 KB (822 words) - 09:27, 25 October 2012
  • Bioinformatics for molecular biology 2011
    '''Note: Please note:
    17 KB (2,539 words) - 11:32, 22 August 2012
  • Plugin test cases 0.85
    ...t i.RefSeq_Ac_TOP, i.UniProt_Ac_TOP, i.type_cv, i.type_name were correct. Note that NP_188928.2 was listed by IntAct while i.RefSeq_Ac_TOP listed NP_18892 ...ein nodes). But 30 protein nodes are returned and there are differences. NOTE. Keep this example for further reference.
    28 KB (4,119 words) - 14:30, 18 June 2010
  • Plugin test cases 0.86
    ...t i.RefSeq_Ac_TOP, i.UniProt_Ac_TOP, i.type_cv, i.type_name were correct. Note that NP_188928.2 was listed by IntAct while i.RefSeq_Ac_TOP listed NP_18892 ...ein nodes). But 30 protein nodes are returned and there are differences. NOTE. Keep this example for further reference.
    28 KB (4,119 words) - 00:10, 19 June 2010
  • Statistics iRefIndex free 7.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    13 KB (1,121 words) - 08:50, 21 May 2010
  • Plugin test cases 0.8
    ...t i.RefSeq_Ac_TOP, i.UniProt_Ac_TOP, i.type_cv, i.type_name were correct. Note that NP_188928.2 was listed by IntAct while i.RefSeq_Ac_TOP listed NP_18892 ...ein nodes). But 30 protein nodes are returned and there are differences. NOTE. Keep this example for further reference.
    20 KB (3,064 words) - 12:43, 15 June 2010
  • Statistics iRefIndex free 6.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    13 KB (1,189 words) - 14:38, 9 April 2010
  • iRefScape plugin menu
    {{Note|
    9 KB (1,459 words) - 15:45, 6 July 2011
  • README iRefIndex expanded MITAB proposal
    {{Note| Note: this distribution includes only those data that may be freely
    52 KB (7,816 words) - 13:44, 27 October 2010
  • Bioscape Methods
    Note that negative and positive scoring methods may be complementary: a term
    13 KB (1,932 words) - 13:43, 14 July 2010
  • Statistics iRefIndex 3.0
    *The value of total unique interactions was edited on 08June 2009. Please note that the sum of the "Unique RIGIDs" column is different from the figure giv
    13 KB (1,100 words) - 14:39, 8 June 2009
  • Bioscape Searching Techniques
    * note that "mouse chromosome 8" should affect any chromosome-related techniques
    12 KB (1,525 words) - 13:46, 14 July 2010
  • README iRefIndex MITAB 1.1
    Note that column 21 may also contain a C. This indicates that the MITAB entry d
    25 KB (3,764 words) - 17:29, 4 March 2009
  • Statistics iRefIndex 6.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    17 KB (1,548 words) - 14:37, 9 April 2010
  • iRefScape 1.0
    ...edundant object group: iRefIndex's internal identifier for a protein. See note feature i.rog. {{Note|
    45 KB (7,264 words) - 11:10, 19 March 2013
  • iRefIndex Development
    {{Note|
    40 KB (4,270 words) - 16:04, 26 October 2012
  • Statistics iRefIndex 7.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    18 KB (1,574 words) - 08:51, 21 May 2010
  • Statistics iRefIndex 16.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    18 KB (1,615 words) - 18:26, 4 October 2019
  • Statistics iRefIndex 15.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    18 KB (1,621 words) - 16:51, 4 February 2018
  • irefindex-old
    {{Note|
    14 KB (2,049 words) - 12:30, 17 October 2011
  • iRefScape 0.7
    ...ical groups are constructed and how canonical representatives are chosen. Note that the rogid for the protein represented by this specific node is listed
    25 KB (4,001 words) - 16:28, 6 July 2011
  • Statistics iRefIndex 14.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    20 KB (1,681 words) - 14:08, 21 April 2015
  • Statistics iRefIndex 18.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    19 KB (1,654 words) - 09:02, 10 June 2021
  • Statistics iRefIndex 13.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    18 KB (1,423 words) - 13:36, 11 December 2013
  • Statistics iRefIndex 20.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    21 KB (1,651 words) - 05:39, 28 August 2023
  • Statistics iRefIndex 19.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    21 KB (1,683 words) - 07:43, 30 October 2022
  • Statistics iRefIndex 17.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    21 KB (1,674 words) - 20:16, 30 June 2020
  • Statistics iRefIndex 8.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    20 KB (1,610 words) - 16:30, 12 January 2011
  • Statistics iRefIndex 9.0
    ...mbiguity exists, the reference with lengthiest sequences selected. (Please note that this score class definition is different from originally published one
    22 KB (1,518 words) - 13:45, 16 February 2012
  • iRefScape 0.8
    ...ical groups are constructed and how canonical representatives are chosen. Note that the rogid for the protein represented by this specific node is listed
    33 KB (5,470 words) - 16:18, 6 July 2011
  • iRefScape 0.9
    ...ical groups are constructed and how canonical representatives are chosen. Note that the rogid for the protein represented by this specific node is listed
    36 KB (5,904 words) - 16:13, 6 July 2011
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