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From irefindex
  • ...hIKey - a form of checksum or hash of the chemical structure of the drug - it is not equivalent or directly comparable to the ROG (redundant object group ...idB) may be either a protein or a small molecule. Where uidB is a protein, it will always have a UniProt accession as an identifier: interactors not havi
    6 KB (888 words) - 14:46, 25 August 2011
  • Data is distributed in the hope that it will be useful, but WITHOUT ANY ...omim identifier usually refers to a record describing a disease phenotype; it is a descriptive entry that does not refer to a unique locus.
    5 KB (771 words) - 09:25, 30 June 2010
  • ...sult, this human interaction ends up in the mouse MITAB (because HPRD says it was mouse). BioGRID correctly curates the paper as about mouse. ...plete provenance info (this will become the main MITAB file we release and it will support PSICQUIC services and we will drop non-canonicalised version i
    4 KB (649 words) - 14:38, 7 November 2011
  • ...d data into tabular data to be stored in a database. In the above example, it is apparent that the experiment, interaction and interactor details reside ...ke an existing mapper file which supports the same subformat and to modify it to understand the new data source. For example, the InnateDB data resembles
    40 KB (4,270 words) - 16:04, 26 October 2012
  • It will be necessary to change the date details included in the above filename ...nerally split to expose the prefix and identifier, name or value following it.
    6 KB (879 words) - 16:52, 29 November 2011
  • This is a planning template for the next release. It does not correspond to a released product. In case of controlled terms to be standard conform it should look like this:
    11 KB (1,675 words) - 11:47, 26 February 2014
  • with the <tt>not_wordnet</tt> method. It is the task of subsequent processing of the ...xtual search results. For example, where only human genes are of interest, it is necessary to firstly identify such genes and to assign a positive score
    13 KB (1,932 words) - 13:43, 14 July 2010
  • ...ch as the individual sentences in each document. By identifying sentences, it then becomes easier to determine whether results occur together in the same ...ch terms, the same matching criteria still apply within Bioscape. However, it can be undesirable to permit such case-insensitive matches for certain kind
    24 KB (3,501 words) - 13:46, 14 July 2010
  • It should be emailed to ian.donaldson at biotek.uio.no preferably as a PDF doc Download, install (if necessary) and learn how to use it.
    17 KB (2,539 words) - 11:32, 22 August 2012
  • When there are many search terms, it is convenient to construct a batch file containing a list of all terms. Thi It is possible to include multiple attributes in the same file. To do this, ea
    7 KB (1,128 words) - 15:41, 6 July 2011
  • This interface is currently discontinued until a new location is arranged for it.
    4 KB (589 words) - 17:23, 28 December 2019
  • ...p://www.ebi.ac.uk/intact/site/index.jsf IntAct], [http://mint.bio.uniroma2.it/mint/Welcome.do MINT], [http://mips.gsf.de/genre/proj/mpact MPact], [http:/ As such, it is important that these databases have the means to effectively exchange an
    9 KB (1,251 words) - 12:27, 17 October 2011
  • A sample configuration file is located in the <tt>config</tt> directory. It can be copied, modified and supplied to the program. ...and run in the [[iRefIndex Build Process]]. For a completed build process it '''should not''' need to be run again, but an option does exist to explicit
    11 KB (1,698 words) - 13:34, 16 February 2012
  • AH2_ARATH returns CAH2_ARATH. It should return 0 results. '''FAIL'''. Imagine if the user accidently had s AHP2_ARATH.2 returns results. It should return 0 results. '''FAIL'''.
    20 KB (3,064 words) - 12:43, 15 June 2010
  • ...e referenced explicitly in various parts of the software. For such values, it is most convenient to
    5 KB (827 words) - 13:48, 14 July 2010
  • | 2 nodes (POL_HV1H2 and POL_HV1B1 interacting with it) ...ntation of results from the term isn't particularly easy to accomplish, or it isn't obvious how to accomplish this successfully, because the iRefScape pa
    24 KB (3,634 words) - 17:32, 24 November 2011
  • ...tection method name used inappropriately as a interaction type name - here it is difficult to say what the inequality between a, b, ab and WT is. ...||immunoblotting might be used as a method of interaction detection though it is usually a method for participant identification - cases should be review
    31 KB (4,505 words) - 12:50, 7 April 2011
  • ...p://www.ebi.ac.uk/intact/site/index.jsf IntAct], [http://mint.bio.uniroma2.it/mint/Welcome.do MINT], [http://mips.gsf.de/genre/proj/mpact MPact], [http:/ As such, it is important that these databases have the means to effectively exchange an
    11 KB (1,496 words) - 08:22, 23 April 2015
  • ...' (letter or number) with a word from the explanatory text. Here, although it is tempting to only take the first letter (or digit) from each word, other Sometimes, it can be inferred which kind of bioentity is being written about in the text.
    12 KB (1,525 words) - 13:46, 14 July 2010
  • ...p://www.ebi.ac.uk/intact/site/index.jsf IntAct], [http://mint.bio.uniroma2.it/mint/Welcome.do MINT], [http://mips.gsf.de/genre/proj/mpact MPact], [http:/ As such, it is important that these databases have the means to effectively exchange an
    11 KB (1,556 words) - 12:52, 22 April 2015

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