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  • iRefScape 0.8 Installation
    #* URL: <tt>ftp://ftp.no.embnet.org/irefindex/Cytoscape/plugin/current/plugins_irefindex.xml</tt> <description>.&lt;br&gt;http://irefindex.uio.no/wiki/README_Cytoscape_plugin_0.8x&lt;p&gt;</description>
    15 KB (2,297 words) - 16:09, 6 July 2011
  • Bioscape Searching
    ...ey would only be known upon being found, and thus there would obviously be no need to record such regions in a lexicon for the purposes of searching for ...ondary concern. Upon recording a matching region as a search result, since no predefined notion of the region exists, a special identifier needs to be us
    24 KB (3,501 words) - 13:46, 14 July 2010
  • Bioscape Indexing
    ...ne identifier, by submitting empty documents for all identifiers for which no document exists in the genuine identifier scheme. From the example above, t
    6 KB (874 words) - 13:45, 14 July 2010
  • Bioscape Data Sources
    ...ty of the downloaded data; Entrez Gene data files are acquired by FTP with no such integrity tests employed. Other remote repositories could be accessed
    6 KB (979 words) - 13:39, 14 July 2010
  • Canonicalization
    ...l form. If two or more such proteins existed, the longest was chosen. If no canonical UniProt sequences existed, the longest protein sequence associate
    6 KB (981 words) - 16:44, 14 March 2013
  • README iRefIndex Feedback 8.0
    Database: iRefIndex (http://irefindex.uio.no) (http://www.biotek.uio.no/)
    17 KB (2,607 words) - 08:48, 20 January 2011
  • iRefScape 0.8
    ...ww.ncbi.nlm.nih.gov/pubmed. Iterations and "Use canonical expansion" have no effect on this search type. This search will return all protein interactor .... <tt>147805</tt> returns records from both BIND and BioGrid) and there is no way to limit this search to a specific database at this time.
    33 KB (5,470 words) - 16:18, 6 July 2011
  • README iRefIndex Feedback 9.0
    Database: iRefIndex (http://irefindex.uio.no) (http://www.biotek.uio.no/)
    18 KB (2,645 words) - 17:38, 9 November 2011
  • README iRefIndex expanded MITAB proposal
    * See http://irefindex.uio.no for links to the latest release and relevant README documentation. http://irefindex.uio.no/wiki/README_iRefIndex_experiment_MITAB_6.0
    52 KB (7,816 words) - 13:44, 27 October 2010
  • iRefScape 0.9
    ...ww.ncbi.nlm.nih.gov/pubmed. Iterations and "Use canonical expansion" have no effect on this search type. This search will return all protein interactor .... <tt>147805</tt> returns records from both BIND and BioGrid) and there is no way to limit this search to a specific database at this time.
    36 KB (5,904 words) - 16:13, 6 July 2011
  • Bioscape Scoring Techniques
    * no agreement (if explanation detected speculatively) * no agreement (if explanation detected speculatively)
    21 KB (2,669 words) - 13:44, 14 July 2010
  • Bioinformatics for molecular biology 2010
    http://bioinformatics.uio.no/wiki/Bioinformatics_course ...ourse is intended for biology students or computer science/math students. No prior background in bioinformatics or computer science is required.
    19 KB (2,793 words) - 22:48, 14 June 2011
  • iRefIndex Build Process
    ...Organism</tt> must be specified in turn when submitting the form: there is no <tt>ALL</tt> option. OPHID is no longer available, so you have to use the local copy of the data:
    47 KB (7,595 words) - 15:50, 4 October 2011
  • MBV9100
    Course page: http://www.uio.no/studier/emner/matnat/molbio/MBV9100BTS/index.xml General information: http://www.biotek.uio.no/events/courses_workshops/2011/MBV9100BTS.html
    6 KB (822 words) - 09:27, 25 October 2012
  • iRefScape 1.0
    ...efScape/archive/e12f853c5951.tar.gz tar.gz archive], [http://irefindex.uio.no/hg/iRefScape/archive/e12f853c5951.zip zip archive] ** [http://irefindex.uio.no/hg/iRefScape/file/e12f853c5951 Source browser]
    45 KB (7,264 words) - 11:10, 19 March 2013
  • README MITAB2.6 for iRefIndex 11.0
    ===Identifiers appearing in column 1 (or 2) are no longer duplicated in column 3 (or 4) === ...cases, a rogid may appear here if a protein interactor has a sequence but no known, valid ''<tt>database:accession</tt>'' pair.
    51 KB (7,688 words) - 10:45, 27 May 2013
  • Bioinformatics for molecular biology 2011
    http://bioinformatics.uio.no/wiki/Bioinformatics_course ...ourse is intended for biology students or computer science/math students. No prior background in bioinformatics or computer science is required.
    17 KB (2,539 words) - 11:32, 22 August 2012
  • README MITAB2.6 for iRefIndex 12.0
    ===Identifiers appearing in column 1 (or 2) are no longer duplicated in column 3 (or 4) === ...cases, a rogid may appear here if a protein interactor has a sequence but no known, valid ''<tt>database:accession</tt>'' pair.
    52 KB (7,804 words) - 09:47, 21 June 2013
  • README MITAB2.6 for iRefIndex 13.0
    ===Identifiers appearing in column 1 (or 2) are no longer duplicated in column 3 (or 4) === ...cases, a rogid may appear here if a protein interactor has a sequence but no known, valid ''<tt>database:accession</tt>'' pair.
    53 KB (7,878 words) - 10:30, 13 December 2013
  • Mapping of terms to MI term ids - iRefIndex 8.0
    ...ta record lists a term where a controlled vocabulary term is expected, and no controlled vocabulary term identifier is found, the term found in the recor # For interaction types where no cv term id is listed.
    26 KB (3,077 words) - 12:50, 7 April 2011

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