Difference between revisions of "Statistics iRefIndex 5.0"

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* for the full list :http://irefindex.uio.no/wikifiles//images/9/90/Interactions_by_taxonomy_beta5_full.pdf
  
 
===Top 15 corrected taxonomy groups in iRefIndex (Taxonomy identifiers corrected using sequence database information)===  
 
===Top 15 corrected taxonomy groups in iRefIndex (Taxonomy identifiers corrected using sequence database information)===  

Revision as of 12:51, 23 July 2009

Summary

  • Total interactions : 871,172
  • Total distinct interactions (based on RIGID): 357,156
  • Total distinct proteins (based on ROGID) : 83,938

This page lists statistics for our internal version of iRefIndex that includes all of the data from sources used for the current build Sources_iRefIndex_4.0. This full build of the iRefIndex contains data that cannot be redistributed according to usage policies of the source databases (namely, from DIP, HPRD and MPact databases). Please contact ian.donaldson at biotek.uio.no if you would like to obtain a copy of the full iRefIndex build under an academic, collaborative agreement.

The data that are freely available at ftp://ftp.no.embnet.org/irefindex/data/current/ are a subset of the full build that we can freely redistribute according to the usage policies of the source databases. Please refer to http://irefindex.uio.no/wiki/Statistics_iRefIndex_free_4.0 for statistics that are applicable to this free dataset.

Interactions available from major taxonomies

Top 15 uncorrected taxonomy groups in iRefIndex (Taxonomy identifiers as they appear in original source)

NCBI taxonomy identifier Name Number of interactions '
4932 Saccharomyces cerevisiae 115570
9606 Homo sapiens 103700
7227 Drosophila melanogaster 46240
40674 Mammalia 35023
197 Campylobacter jejuni 11998
6239 Caenorhabditis elegans 11793
284812 Schizosaccharomyces pombe 972h- 11556
10090 Mus musculus 9964
562 Escherichia coli 8512
3702 Arabidopsis thaliana 5348
160 Treponema pallidum 3646
83333 Escherichia coli K-12 3490
10116 Rattus norvegicus 3477
1142 Synechocystis 3057
36329 Plasmodium falciparum 3D7 2731

Top 15 corrected taxonomy groups in iRefIndex (Taxonomy identifiers corrected using sequence database information)

4932 Saccharomyces cerevisiae 115562
9606 Homo sapiens 114618
7227 Drosophila melanogaster 46244
197 Campylobacter jejuni 11998
4896 Schizosaccharomyces pombe 11831
6239 Caenorhabditis elegans 11793
10090 Mus musculus 8569
83333 Escherichia coli K-12 7482
3702 Arabidopsis thaliana 5354
155864 Escherichia coli O157:H7 EDL933 4928
160 Treponema pallidum 3646
1148 Synechocystis sp. PCC 6803 3166
36329 Plasmodium falciparum 3D7 2731
10116 Rattus norvegicus 2650
85962 Helicobacter pylori 26695 1598

Interactions (Corresponds to Table 6 in PMID 18823568)

Interactors

Summary of mapping interaction records to RIGs (Corresponds to Table 5 in PMID 18823568)

Assignment of protein interactors to ROGs (Corresponds to Table 3 in PMID 18823568)

ROG summary (Corresponds to Table 4 in PMID 18823568)

Scores (Corresponds to Table 2 in PMID 18823568)