iRefIndex/PBR Notes
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Revision as of 10:34, 21 September 2009 by PaulBoddie (talk | contribs) (New page: Importing MITAB output from the iRefIndex 5.1 build and a build done using the BIND PSI-XML data, then comparing the interaction details for BIND, the following distribution is observed: ...)
Importing MITAB output from the iRefIndex 5.1 build and a build done using the BIND PSI-XML data, then comparing the interaction details for BIND, the following distribution is observed:
| iRefIndex 5.1 | |||
| (Total) | (9811) | ||
| 3818 | |||
| PSI-XML | (8916) | 2923 | 5993 |
To summarise:
- Common interactions: 5993
- Interactions only in iRefIndex 5.1: 3818
- Interactions only in BIND PSI-XML: 2923
This is what I did for the unnecessary "new BIND vs. other sources" experiment...
Downloaded the following:
- BioGrid
- CORUM
- DIP
- HPRD
- Intact
- MINT
- MIPS (MPPI)
- OPHID
Modified the following:
- BioGrid - removed all but human data
Parsed all sources mentioned above.
Removed all non-9606 records.
Did ROG assignment and so on.
Made the reports.
