Difference between revisions of "iRefScape plugin menu"
(Created page with '==Search tools== ===Retrieve interactions for the selected nodes=== ===Expand one level=== ===Load interactions between neighbours=== ===Clear load history (Reload everything ne…') |
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===Retrieve interactions for the selected nodes=== | ===Retrieve interactions for the selected nodes=== | ||
| + | To load all protein-protein interactions and complexes involving one or more selected nodes. This action is same as performing a iteration=1 search using iRefScape for the selected nodes. | ||
| + | |||
===Expand one level=== | ===Expand one level=== | ||
| + | To load all protein-protein interactions and complexes involving at least one of the nodes in the current network. The behaviour is same as performing iteration=1 search using iRefScape for all the nodes. | ||
| + | |||
===Load interactions between neighbours=== | ===Load interactions between neighbours=== | ||
| + | To complete the interactions between the currently loaded nodes. When a search & load operation is performed in iRefScape the network retuned contains all the proteins interacting with the query and the corresponding interactions. This does not return interactions between the neighbours of the query. This operation is same as performing a iteration=0 search using iRefScape for all the nodes. | ||
| + | This action has no effect for networks for which this operation has already been performed using the option presented at the end of the search. | ||
| + | |||
| + | |||
===Clear load history (Reload everything next time)=== | ===Clear load history (Reload everything next time)=== | ||
===Reset node degree=== | ===Reset node degree=== | ||
Revision as of 13:15, 28 June 2010
==Search tools== .
Contents
Retrieve interactions for the selected nodes
To load all protein-protein interactions and complexes involving one or more selected nodes. This action is same as performing a iteration=1 search using iRefScape for the selected nodes.
Expand one level
To load all protein-protein interactions and complexes involving at least one of the nodes in the current network. The behaviour is same as performing iteration=1 search using iRefScape for all the nodes.
Load interactions between neighbours
To complete the interactions between the currently loaded nodes. When a search & load operation is performed in iRefScape the network retuned contains all the proteins interacting with the query and the corresponding interactions. This does not return interactions between the neighbours of the query. This operation is same as performing a iteration=0 search using iRefScape for all the nodes. This action has no effect for networks for which this operation has already been performed using the option presented at the end of the search.
Clear load history (Reload everything next time)
Reset node degree
===Load user variablesv
