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From irefindex

Create the page "table" on this wiki! See also the search results found.

  • iRefIndex/PBR
    == Summary of mapping interaction records to RIGs (Table 5) == == Assignment of protein interactors to ROGs (Table 3) ==
    8 KB (950 words) - 17:02, 14 September 2009
  • iRefIndex/PBR Notes
    create table export_all_i5_bind as create table export_all_xml_bind as
    27 KB (3,818 words) - 13:43, 26 October 2009
  • Statistics iRefIndex 2.0
    {| {{table}} {| {{table}}
    2 KB (159 words) - 17:30, 4 March 2009
  • Cytoscape layout analysis
    {| {{table}} {| {{table}}
    2 KB (243 words) - 12:08, 11 April 2010
  • README Cytoscape plugin menu 1.0x
    ===Create comparison table=== #Select the menu: iRefScape -> Grouping -> Create comparison table
    2 KB (335 words) - 15:01, 28 June 2011
  • iRefIndex Testing 7.0
    {| {{table}} {| {{table}}
    12 KB (1,682 words) - 10:21, 14 December 2010
  • Advanced iRefWeb searches
    ...input boxes on the search form. In these three case there's no "q=". See table below. ...re lots of other xxx field specifiers. If you are interested, look at the table below.
    3 KB (522 words) - 01:14, 5 August 2010
  • Statistics iRefIndex free 4.0
    == Interactions (Corresponds to Table 6 in PMID 18823568)== == Summary of mapping interaction records to RIGs (Corresponds to Table 5 in PMID 18823568) ==
    12 KB (1,121 words) - 13:30, 9 June 2009
  • Sources iRefIndex 2.0
    {| {{table}} {| {{table}}
    4 KB (552 words) - 17:30, 4 March 2009
  • Statistics iRefIndex free 5.0
    == Interactions (Corresponds to Table 6 in PMID 18823568)== ==Summary of mapping interaction records to RIGs (Corresponds to Table 5 in PMID 18823568) ==
    13 KB (1,112 words) - 14:35, 16 August 2009
  • Sources iRefIndex 3.0
    {| {{table}} {| {{table}}
    4 KB (574 words) - 10:40, 10 March 2009
  • Statistics iRefIndex free 6.0
    == Interactions (Corresponds to Table 6 in PMID 18823568)== ==Summary of mapping interaction records to RIGs (Corresponds to Table 5 in PMID 18823568) ==
    13 KB (1,189 words) - 14:38, 9 April 2010
  • Sources iRefIndex 4.0
    {| {{table}} {| {{table}}
    4 KB (633 words) - 11:23, 26 June 2009
  • Bioscape Workflow
    ...using a ''text generation'' (and recorded in the <tt>text_generations</tt> table). ...'search generation'' (and recorded in the <tt>text_search_generations</tt> table). Since the search parameters can be changed, potentially many search gener
    5 KB (716 words) - 13:38, 14 July 2010
  • Sources iRefIndex 5.0
    {| {{table}} {| {{table}}
    5 KB (640 words) - 15:55, 31 July 2009
  • iRefIndex Maintenance
    ...InnoDB Storage Engine :: 13.2.2 InnoDB Configuration :: 13.2.2.1 Using Per-Table Tablespaces] === Moving Tables into Separate Table Files ===
    7 KB (1,088 words) - 16:05, 26 October 2012
  • Sources iRefIndex 6.0
    {| {{table}} {| {{table}}
    5 KB (674 words) - 14:37, 9 April 2010
  • Magrathea Related Resources and Links
    {| {{table}}
    2 KB (230 words) - 08:31, 4 August 2009
  • Protein identifier mapping
    {| {{table}} ...e cases, use the irogid (or icrogid) to retrieve all other entries in this table with identical sequences (or belonging to the same canonical group)- one of
    3 KB (375 words) - 17:07, 14 March 2013
  • Statistics iRefIndex free 7.0
    == Summary of mapping interaction records to RIGs (Table 5) == == Assignment of protein interactors to ROGs (Table 3) ==
    13 KB (1,121 words) - 08:50, 21 May 2010
  • Statistics iRefIndex 3.0
    == Interactions (Corresponds to Table 6 in PMID 18823568)== == Summary of mapping interaction records to RIGs (Corresponds to Table 5 in PMID 18823568) ==
    13 KB (1,100 words) - 14:39, 8 June 2009
  • http://irefindex.uio.no/wiki/README iRefIndex Feedback 3.0
    {| {{table}} The table below is a legend of the characters used in the rogscore (column 14).
    16 KB (2,373 words) - 10:49, 26 March 2009
  • README iRefIndex Feedback 2.0
    {| {{table}} The table below is a legend of the characters used in the rogscore (column 14).
    16 KB (2,375 words) - 20:14, 26 April 2009
  • README iRefIndex Feedback 4.0
    {| {{table}} The table below is a legend of the characters used in the rogscore (column 14).
    16 KB (2,370 words) - 15:02, 8 June 2009
  • README iRefIndex Feedback 3.0
    {| {{table}} The table below is a legend of the characters used in the rogscore (column 14).
    16 KB (2,370 words) - 20:14, 26 April 2009
  • Statistics
    {| {{table}} {| {{table}}
    10 KB (987 words) - 11:15, 29 January 2009
  • Statistics iRefIndex 4.0
    {| {{table}} == Interactions (Corresponds to Table 6 in PMID 18823568)==
    15 KB (1,273 words) - 13:31, 9 June 2009
  • iRefIndex MITAB2.6 Parser
    ! Table purpose Further work may include the introduction of a separate interactor table, collecting related information for each interactor. Support for interactor
    6 KB (879 words) - 16:52, 29 November 2011
  • validator beta2
    {| {{table}}
    3 KB (433 words) - 14:43, 16 August 2009
  • iRefScape debugging
    #>show_inxc - Displays a table of indices and control properties.
    1 KB (160 words) - 09:14, 18 June 2010
  • README iRefIndex Feedback 5.0
    {| {{table}} The table below is a legend of the characters used in the rogscore (column 14).
    17 KB (2,588 words) - 17:10, 10 August 2009
  • README iRefIndex Feedback 6.0
    {| {{table}} The table below is a legend of the characters used in the rogscore (column 14).
    17 KB (2,605 words) - 14:34, 9 April 2010
  • README iRefIndex Feedback 7.0
    {| {{table}} The table below is a legend of the characters used in the rogscore (column 14).
    17 KB (2,609 words) - 17:19, 18 May 2010
  • Sources iRefIndex 8.0
    {| {{table}} cellpadding="10" cellspacing="0" border="1" {| {{table}} cellpadding="10" cellspacing="0" border="1"
    6 KB (795 words) - 08:45, 20 January 2011
  • Sources iRefIndex 7.0
    {| {{table}} {| {{table}}
    5 KB (775 words) - 21:28, 20 September 2010
  • Sources iRefIndex 9.0
    {| {{table}} cellpadding="10" cellspacing="0" border="1" {| {{table}} cellpadding="10" cellspacing="0" border="1"
    6 KB (826 words) - 11:13, 20 April 2012
  • Statistics iRefIndex 5.0
    {| {{table}} {| {{table}}
    17 KB (1,488 words) - 17:07, 10 August 2009
  • iRefIndex Development
    Table int_name ... Table int_xref ...
    40 KB (4,270 words) - 16:04, 26 October 2012
  • iRefScape plugin menu
    === Create comparison table === ...of nodes down the side of the table (as row headings). In the body of the table, each cell situated in a particular location (defined in terms of a particu
    9 KB (1,459 words) - 15:45, 6 July 2011
  • Statistics iRefIndex 6.0
    {| {{table}} {| {{table}}
    17 KB (1,548 words) - 14:37, 9 April 2010
  • Bioscape Web Resources
    ...t__.py</tt> source file) in the <tt>bsweb</tt> distribution. The following table summarises the source code organisation:
    3 KB (403 words) - 13:47, 14 July 2010
  • README iRefIndex Feedback 1.1
    See iRefIndex paper. PMID 18823568. Table 4 column 1 Each row in this table represents an interactor reference which we were unable to map to
    8 KB (1,082 words) - 17:29, 4 March 2009
  • Statistics iRefIndex 7.0
    {| {{table}} {| {{table}}
    18 KB (1,574 words) - 08:51, 21 May 2010
  • iRefIndex MITAB Mapping
    ! iRefIndex table and column assignments
    3 KB (366 words) - 15:37, 29 June 2011
  • iRefIndex MITAB2.5 Parser
    ! Table purpose Further work may include the introduction of a separate interactor table, collecting taxonomy and gene information for each interactor.
    5 KB (720 words) - 14:51, 19 September 2011
  • iRefIndex Data Preparation for iRefWeb
    ...updated so that each statement defining a source in the <tt>source_db</tt> table refers to the appropriate release version and date. For iRefIndex 9.0, a table will be made available mapping the RIGIDs used in that release (and subsequ
    6 KB (1,046 words) - 13:04, 20 October 2011
  • Magrathea Installation and Use
    ...are possible using a number of keyboard controls that are described in the table below.
    3 KB (498 words) - 13:30, 20 April 2010
  • README iRefIndex Feedback 8.0
    {| {{table}} The table below is a legend of the characters used in the rogscore (column 14).
    17 KB (2,607 words) - 08:48, 20 January 2011
  • Sources iRefIndex 17.0
    | MMDB ||2014-05-29 ||ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ ||table ||
    5 KB (684 words) - 20:34, 30 June 2020
  • Bioscape Result Assessment
    The <tt>--pretty</tt> option provides a table with the following columns: ...cts/GeneRIF/GeneRIFhelp.html GeneRIF] dataset and the <tt>gene2pubmed</tt> table in the Entrez Gene download files (as described in the [ftp://ftp.ncbi.nih.
    10 KB (1,540 words) - 16:48, 15 July 2010
  • DiG: Disease groups
    ...is exported as a simple table with about 5000 entries. Each line in this table corresponds to one gene – disorder association and looks as follows: <br/ ...ed to limit search results for the gene symbol name first in the gene info table (released by the EntrezGene database). In those cases where no hit was foun
    10 KB (1,459 words) - 11:55, 17 October 2011
  • README iRefIndex Feedback 9.0
    The table below is a legend of the characters used in the rogscore (column 14). {| {{table}}
    18 KB (2,645 words) - 17:38, 9 November 2011
  • Statistics iRefIndex 13.0
    == Summary of mapping interaction records to RIGs (Table 5) == == Assignment of protein interactors to ROGs (Table 3) ==
    18 KB (1,423 words) - 13:36, 11 December 2013
  • Sources iRefIndex 18.0
    | MMDB ||2014-05-29 ||ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ ||table ||
    5 KB (728 words) - 10:19, 20 August 2021
  • Sources iRefIndex 19.0
    | MMDB ||2014-05-29 ||ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ ||table ||
    5 KB (751 words) - 07:46, 30 October 2022
  • Sources iRefIndex 20.0
    | MMDB ||2014-05-29 ||ftp://ftp.ncbi.nih.gov/mmdb/pdbeast/ ||table ||
    5 KB (723 words) - 05:18, 28 August 2023
  • Statistics iRefIndex 10.0
    == Summary of mapping interaction records to RIGs (Table 5) == == Assignment of protein interactors to ROGs (Table 3) ==
    16 KB (891 words) - 12:24, 12 December 2013
  • Statistics iRefIndex 12.0
    == Summary of mapping interaction records to RIGs (Table 5) == == Assignment of protein interactors to ROGs (Table 3) ==
    16 KB (889 words) - 12:26, 12 December 2013
  • Statistics iRefIndex 11.0
    == Summary of mapping interaction records to RIGs (Table 5) == == Assignment of protein interactors to ROGs (Table 3) ==
    16 KB (893 words) - 12:25, 12 December 2013
  • Bioscape Methods
    The mechanism by which a method's score is evaluated employs a table containing filtering information for any given result set: Some methods rely on additional data. Partitions of the table
    13 KB (1,932 words) - 13:43, 14 July 2010
  • Sources iRefIndex 13.0
    MMDB DOWNLOAD_FILES table
    4 KB (594 words) - 17:59, 12 December 2013
  • Sources iRefIndex 11.0
    MMDB DOWNLOAD_FILES table
    4 KB (653 words) - 10:48, 27 May 2013
  • iRefIndex Build Process
    In order to get the sequence of SEGUIDs not retrieved in later stages the table "seguid2sequence" has to be made as follows. ...GUID identifier consistency is required with a previous database, copy the table from the previous release:
    47 KB (7,595 words) - 15:50, 4 October 2011
  • Sources iRefIndex 12.0
    MMDB DOWNLOAD_FILES table
    4 KB (655 words) - 10:09, 5 December 2013
  • Statistics iRefIndex 8.0
    {| {{table}} {| {{table}}
    20 KB (1,610 words) - 16:30, 12 January 2011
  • Sources iRefIndex 10.0
    MMDB DOWNLOAD_FILES table
    4 KB (661 words) - 12:14, 14 March 2013
  • Sources iRefIndex 14.0
    MMDB DOWNLOAD_FILES table
    6 KB (839 words) - 10:47, 21 April 2015
  • Bioscape Development
    <li>Create a new record in the <tt>text_method</tt> table. In PostgreSQL this can be done using a <tt>COPY</tt> command together with
    5 KB (827 words) - 13:48, 14 July 2010
  • Statistics iRefIndex 14.0 full
    == Summary of mapping interaction records to RIGs (Table 5) == == Assignment of protein interactors to ROGs (Table 3) ==
    22 KB (1,066 words) - 13:04, 21 April 2015
  • Sources iRefIndex 15.0
    MMDB DOWNLOAD_FILES table
    7 KB (895 words) - 16:04, 10 March 2018
  • Statistics iRefIndex 9.0
    {| {{table}} {| {{table}}
    22 KB (1,518 words) - 13:45, 16 February 2012
  • Sources iRefindex 16.0
    MMDB DOWNLOAD_FILES table
    7 KB (916 words) - 18:11, 4 October 2019
  • Sources iRefIndex 16.0
    MMDB DOWNLOAD_FILES table
    7 KB (917 words) - 18:34, 4 October 2019
  • README DiG 1.0
    The whole point of the table. This identifier is not stable between releases of DiG.
    5 KB (771 words) - 09:25, 30 June 2010
  • Sources iRefIndex 9.0/Issues
    Modify existing RIGID table or lose continuity of iRIGIDs with last release.
    4 KB (649 words) - 14:38, 7 November 2011
  • Sources and Issues Next Release
    {| {{table}} cellpadding="10" cellspacing="0" border="1" {| {{table}} cellpadding="10" cellspacing="0" border="1"
    11 KB (1,675 words) - 11:47, 26 February 2014
  • iRefScape 0.5
    {| {{table}} {| {{table}}
    19 KB (3,075 words) - 16:29, 6 July 2011
  • Text Mining Resources
    ** Results are initially presented using a table of "facets" such as co-occurring gene/protein, Gene Ontology categories, dr
    9 KB (1,355 words) - 14:04, 17 February 2010
  • iRefScape Batch Files
    The following table provides details of supported search terms:
    7 KB (1,128 words) - 15:41, 6 July 2011
  • MBV9100
    http://en.wikipedia.org/wiki/Help:Table
    6 KB (822 words) - 09:27, 25 October 2012
  • iRefIndex Output and Statistics
    ...t> script in the <tt>SQL_commands</tt> directory can be used to generate a table of interactions by species:
    11 KB (1,698 words) - 13:34, 16 February 2012
  • Protein Interaction Resources
    This table accompanies a talk on [http://donaldson.uio.no/wikifiles//images/a/ab/Inter {| {{table}}
    15 KB (2,118 words) - 10:10, 23 August 2011
  • The Magrathea Manual: Building Coordinated Agent Models
    This dot-delimited condition is of the form specified in the next table. ...ace delimited fields. These fields and their formats are described in the table below, Specific examples of their use are described next.
    75 KB (11,015 words) - 13:00, 20 April 2010
  • Mapping of terms to MI term ids - iRefIndex 6.0
    {| {{table}} {| {{table}}
    31 KB (4,505 words) - 12:50, 7 April 2011
  • iRefScape 0.6
    {| {{table}} {| {{table}}
    31 KB (4,911 words) - 16:28, 6 July 2011
  • iRefIndex more
    <!--end of table section-->
    11 KB (1,556 words) - 12:52, 22 April 2015
  • README MITAB2.6 for iRefIndex 15.0
    <!-- could make a table of links like this Each row in this table has a natural key pointing to an original interaction record in some source
    52 KB (7,771 words) - 16:03, 10 March 2018
  • README MITAB2.6 for iRefIndex 16.0
    <!-- could make a table of links like this Each row in this table has a natural key pointing to an original interaction record in some source
    52 KB (7,785 words) - 09:48, 9 October 2019
  • README MITAB2.6 for iRefIndex 18.0
    <!-- could make a table of links like this Each row in this table has a natural key pointing to an original interaction record in some source
    52 KB (7,774 words) - 10:25, 20 August 2021
  • README MITAB2.6 for iRefIndex 17.0
    <!-- could make a table of links like this Each row in this table has a natural key pointing to an original interaction record in some source
    52 KB (7,778 words) - 19:31, 30 June 2020
  • README MITAB2.6 for iRefIndex 10.0
    ...d regardless of whether or not they appear in an interaction record. This table lists their corresponding rogids, canonical rogids and entrez gene ids (for Each row in this table has a natural key pointing to an original interaction record in some source
    52 KB (7,812 words) - 12:00, 5 April 2013
  • README MITAB2.6 for iRefIndex 14.0
    <!-- could make a table of links like this Each row in this table has a natural key pointing to an original interaction record in some source
    55 KB (8,209 words) - 09:44, 23 July 2016
  • Statistics iRefIndex 16.0
    ...vided in the interaction record are used to make a new entry in the SEGUID table. The protein interactor is assigned the newly (N) generated ROG identifier.
    18 KB (1,615 words) - 18:26, 4 October 2019
  • Statistics iRefIndex 15.0
    ...vided in the interaction record are used to make a new entry in the SEGUID table. The protein interactor is assigned the newly (N) generated ROG identifier.
    18 KB (1,621 words) - 16:51, 4 February 2018
  • Statistics iRefIndex 14.0
    ...vided in the interaction record are used to make a new entry in the SEGUID table. The protein interactor is assigned the newly (N) generated ROG identifier.
    20 KB (1,681 words) - 14:08, 21 April 2015
  • Statistics iRefIndex 18.0
    ...vided in the interaction record are used to make a new entry in the SEGUID table. The protein interactor is assigned the newly (N) generated ROG identifier.
    19 KB (1,654 words) - 09:02, 10 June 2021
  • Statistics iRefIndex 20.0
    ...vided in the interaction record are used to make a new entry in the SEGUID table. The protein interactor is assigned the newly (N) generated ROG identifier.
    21 KB (1,651 words) - 05:39, 28 August 2023
  • Statistics iRefIndex 19.0
    ...vided in the interaction record are used to make a new entry in the SEGUID table. The protein interactor is assigned the newly (N) generated ROG identifier.
    21 KB (1,683 words) - 07:43, 30 October 2022
  • Statistics iRefIndex 17.0
    ...vided in the interaction record are used to make a new entry in the SEGUID table. The protein interactor is assigned the newly (N) generated ROG identifier.
    21 KB (1,674 words) - 20:16, 30 June 2020
  • README MITAB2.6 for iRefIndex 8.0
    Each row in this table has a natural key pointing to an original interaction record in some source Rows in this table that all provide evidence for an interaction between the same set of protei
    49 KB (7,401 words) - 12:34, 17 October 2011

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