Sources iRefIndex 19.0

From irefindex

Last edited: 2022-10-30

Applies to iRefIndex release: 19.0

Release date: 22-08-2022

Authors: Luc Ducazu

Database: iRefIndex (

Description: This file lists interaction and protein sequence related resources used for the current build of the iRefIndex. Statistics for the iRefIndex are available and include a breakdown of interactors and interactions from each data source.

Data source information

Source Release date Release URL Download files Version
ATHALIANA 2022-02-23 Arabidopsis_thaliana.TAIR10.53.uniprot.tsv.gz
BAR 2022-08-07* bar_psicquic.txt
BHF_UCL 2022-08-05*?format=tab27 bhfucl_psicquic.txt
BIND 2006-05-25 20060525*.txt
BIND_TRANSLATION 2014-05-20 BINDTranslation_v1_xml_AllSpecies.tar.gz
BIOGRID 2022-08-05
CORUM 2022-08-05
DIG 2010-06-14 morbidmap14062010.txt
DIP 2017-02-05 dip20170205.mif25.gz
FLY 2022-08-03 fly.txt 2022_03
GENE 2022-08-05 gene2refseq.gz gene_info.gz gene2go.gz gene_history.gz
GENPEPT 2022-06-17 gb*.fsa_aa.gz
HPIDB 2022-08-05*?format=tab27 hpidb_psicquic.txt
HPRD 2010-04-13 HPRD_PSIMI_041310.tar.gz
HURI 2020-03-09 HuRI.psi
IMEX 2022-08-06*?format=tab27 imex_psicquic.txt
INNATEDB 2022-01-29 innatedb_all.mitab.gz
INTACT 2022-07-13
INTCOMPLEX 2022-07-13
IPI 2012-07-20 *.fasta.gz
MATRIXDB 2022-08-05*?format=tab27 matrixdb_psicquic.txt
MBINFO 2022-08-05*?format=tab27 mbinfo_psicquic.txt
MINT 2022-08-05*?format=tab27 mint_psicquic.txt
MMDB 2014-05-29 table
MPACT 2021-04-21 mpact-complete.psi25.xml.gz
MPIDB 2022-08-05*?format=tab27 mpidb_psicquic.txt
MPPI 2021-04-19 mppi.gz
PDB 2022-07-30 pdbaa.gz
PSI_MI 2022-08-05 psi-mi.obo
QUICKGO 2022-08-05*?format=tab27 quickgo_psicquic.txt
REACTOME 2022-08-05* reactome_psicquic.txt
REFSEQ 2022-07-15 complete*.protein.gpff.gz
TAXONOMY 2022-08-05 taxdump.tar.gz
UNIPROT 2022-08-03 uniprot_sprot.dat.gz uniprot_trembl.dat.gz uniprot_sprot_varsplic.fasta.gz reldate.txt 2022_03
UNIPROTPP 2022-08-05*?format=tab27 uniprotpp_psicquic.txt
VIRUSHOST 2022-08-05* virushost_psicquic.txt
YEAST 2022-08-03 yeast.txt 2022_03

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Follow this link for a listing of all iRefIndex related pages (archived and current).