Statistics iRefIndex 10.0

Interactions available from major taxonomies

NCBI taxonomy identifier	Scientific name	Number of interactions
9606	Homo sapiens	194174
559292	Saccharomyces cerevisiae S288c	95517
7227	Drosophila melanogaster	60120
4932	Saccharomyces cerevisiae	47815
40674	Mammalia	36363
10090	Mus musculus	28131
3702	Arabidopsis thaliana	20734
83333	Escherichia coli K-12	15155
6239	Caenorhabditis elegans	13845
192222	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	11970
10116	Rattus norvegicus	7597
562	Escherichia coli	5360
4896	Schizosaccharomyces pombe	4171
632	Yersinia pestis	3956

Interactions available from major taxonomies (corrected)

NCBI taxonomy identifier	Scientific name	Number of interactions
9606	Homo sapiens	204941
559292	Saccharomyces cerevisiae S288c	110273
7227	Drosophila melanogaster	60123
10090	Mus musculus	24868
3702	Arabidopsis thaliana	20734
83333	Escherichia coli K-12	17284
6239	Caenorhabditis elegans	13845
192222	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	12000
10116	Rattus norvegicus	6073
284812	Schizosaccharomyces pombe 972h-	4422
632	Yersinia pestis	3956
243276	Treponema pallidum subsp. pallidum str. Nichols	3643
1111708	Synechocystis sp. PCC 6803 substr. Kazusa	3186
1392	Bacillus anthracis	3042

Interactions

	BIND	BIND_TRANSLATION	BIOGRID	CORUM	DIP	HPRD	INNATEDB	INTACT	MATRIXDB	MINT	MPACT	MPI-IMEX	MPI-LIT	MPPI	OPHID
BIND	63020	50014	20225	177	24324	1567	265	22121	3	20900	5912	6	27	299	1722
BIND_TRANSLATION		60618	22798	166	25300	2269	364	22858	3	21923	5855	6	23	300	2400
BIOGRID			197878	118	28542	7749	807	35065	6	37858	4189		1	87	5125
CORUM				2607	114	140	59	280		128				15	239
DIP					70256	453	330	25330	3	31655	6307	43	190	51	1105
HPRD						40556	770	4252	17	3235				113	7106
INNATEDB							9663	864	6	581				47	1143
INTACT								161889	14	44341	6234	64	141	101	7881
MATRIXDB									225	2				1	25
MINT										87948	6484	15	37	90	7192
MPACT											13338
MPI-IMEX												468	30
MPI-LIT													742
MPPI														778	181
OPHID															47500
(Exclusive to source)	10946	5435	129453	1993	24053	26650	7146	97895	179	21184	5362	364	443	237	31077

Interactors

	BIND	BIND_TRANSLATION	BIOGRID	CORUM	DIP	HPRD	INNATEDB	INTACT	MATRIXDB	MINT	MPACT	MPI-IMEX	MPI-LIT	MPPI	OPHID
BIND	37581	29664	15420	1817	15330	2317	1667	17304	88	16014	4200	31	85	610	2717
BIND_TRANSLATION		36033	16430	1837	15699	2788	1878	17801	95	16311	3877	30	95	611	3082
BIOGRID			41019	2247	14132	5903	2486	25406	104	18038	4469		2	435	5348
CORUM				4363	1360	1533	1336	3410	51	2667				408	2248
DIP					23369	1394	1363	17963	72	16859	4408	126	380	363	2006
HPRD						9847	1871	5369	104	3980				270	5167
INNATEDB							4870	3545	107	2649				381	2617
INTACT								57606	165	25926	4932	183	499	659	7522
MATRIXDB									244	118				15	145
MINT										32795	4804	69	243	564	5648
MPACT											4982				1
MPI-IMEX												470	91
MPI-LIT													934
MPPI														835	418
OPHID															9539
(Exclusive to source)	6350	3682	10832	431	1972	2127	604	18822	33	3859	17	241	325	24	710

Summary of mapping interaction records to RIGs (Table 5)

Source	Total records	Protein-related interactions	PPI assigned to RIGID	%	Unique RIGIDs	%
BIND	157736	93957	91087	96.95	63020	69.19
BIND_TRANSLATION	192923	87081	81355	93.42	60618	74.51
BIOGRID	527569	300924	300064	99.71	197878	65.95
CORUM	2844	2844	2844	100.00	2607	91.67
DIP	74089	74089	72620	98.02	70256	96.74
HPRD	83022	83022	82982	99.95	40556	48.87
INNATEDB	17997	17997	14316	79.55	9663	67.50
INTACT	200185	197027	191386	97.14	161889	84.59
MATRIXDB	1065	473	387	81.82	225	58.14
MINT	127577	127312	125239	98.37	87948	70.22
MPACT	16504	16504	16308	98.81	13338	81.79
MPI-IMEX	473	473	468	98.94	468	100.00
MPI-LIT	745	745	742	99.60	742	100.00
MPPI	1814	1814	1583	87.27	778	49.15
OPHID	73257	73257	73257	100.00	47500	64.84
(All)	1477800	1077519	1054638	97.88	492588	-

Assignment of protein interactors to ROGs (Table 3)

Source	Protein interactors	Assigned	%	Arbitrary	Matching sequence	New or obsolete sequence	Unassigned	Unique proteins
BIND	252251	251990	99.90	0	0	1154	261	37581
BIND_TRANSLATION	257681	251245	97.50	40645	0	691	6436	36033
BIOGRID	41670	41185	98.84	9866	0	72	485	41019
CORUM	12916	12916	100.00	7	0	0	0	4363
DIP	24150	24129	99.91	1884	0	476	21	23369
HPRD	123812	123812	100.00	14818	99981	140	0	9847
INNATEDB	37398	33353	89.18	1	0	0	4045	4870
INTACT	165369	164471	99.46	69	29	360	898	57606
MATRIXDB	1274	1266	99.37	0	0	0	8	244
MINT	91829	91287	99.41	789	11	3924	542	32795
MPACT	40349	40134	99.47	0	0	3	215	4982
MPI-IMEX	946	940	99.37	2	0	0	6	470
MPI-LIT	1490	1487	99.80	7	0	0	3	934
MPPI	3568	3366	94.34	16	0	5	202	835
OPHID	146514	146514	100.00	405	12	1010	0	9539
(All)	1201217	1188095	98.91	68509	100033	7835	13122	107323

ROG summary

	BIND	BIND_TRANSLATION	BIOGRID	CORUM	DIP	HPRD	INNATEDB	INTACT	MATRIXDB	MINT	MPACT	MPI-IMEX	MPI-LIT	MPPI	OPHID
P		173893	26063	12877			33352	163662		51523		616	1072
P+IN								2
P+L		19160	669							5
P+N								9		223
P+X		2	2
PD	115928								1263	3				2996	124549
PD+IN								1
PD+LQ		10536
PD+LYQ		67
PD+N															22
PD+X	9
PD+XQ		26
PDIQ		732
PDQ		30255
PDY	907													5	988
PDYQ		380
PGD		357	1411							102
PGD+L		6560	9184							705
PGD+X			5
PI								32		66
PIY								343
PT		2044	1646					1		34331	30579	320	404
PT+L		542	1
PTD	83701								3	2				44	114
PTD+LQ		3695
PTD+LYQ		12
PTDIQ		13
PTDQ		1863
PTDY	136
PTDYQ		34
PTGD		1
PTGD+L		37	3
PTI								11		1
PU		15		32				291		343			2
PU+L		17		7			1	42		39			7
PU+O								14		3
PU+X		610						1		15			1
PUD	6													143	16889
PUD+L														13	265
PUD+O															12
PUD+X	82													162	3526
PUT		4						14		170	2527	2	1
PUT+L		19						27		37		2
PUT+O								15		8
PUTD	4														9
PUTD+L														3	140
PV										7
PV+L										3
PY		198	47					3		3699
S		141	973		11160	36		1
S+L			3		1360	407
S+LY			6		1	6
S+N								2
S+O						384
S+X					263
S+XY					1
SD			1145		3410	2029
SD+L					181	297
SD+LY					35
SD+N						53
SD+O						12170
SD+OY						14
SD+X					1045
SD+XY					3
SDY					286
SGD						303
SGD+L						2934
SGD+O						15536
SI	45223
SIY	111
ST					4487	42					7025
ST+L					244	2569
ST+LY						61
ST+O						928
STD			8		627	5704
STD+L					4	723
STD+O						30869
STD+OY						6
STDY					2
STGD						846
STGD+L						7806
STGD+O						39941
STI	5883
STY											3
SU		32
SUD					43
SUD+L					32	8
SUD+O						2
SUD+X					759
SUTD					11
SUTD+L					27	7
SUTD+O						131
SY			19		148					2