User contributions
From irefindex
- 15:05, 2 December 2009 diff hist +176 Bioscape Development →Adding New Search Result Types: Added database template note.
- 09:00, 2 December 2009 diff hist +101 Bioscape Scoring Techniques Added missing suggestions.
- 16:33, 1 December 2009 diff hist +3,374 Bioscape Scoring Techniques Added more examples.
- 13:28, 26 November 2009 diff hist +3,794 Bioscape Scoring Techniques Added some acronym mention techniques.
- 15:42, 24 November 2009 diff hist +762 Bioscape Scoring Techniques Added chromosome information correspondence.
- 16:41, 23 November 2009 diff hist +1,664 Bioscape Scoring Techniques Added Gene Ontology-related techniques.
- 13:29, 23 November 2009 diff hist +2,974 Bioscape Scoring Techniques Added more examples.
- 12:55, 23 November 2009 diff hist -127 Bioscape Methods Replaced section, linking to a more comprehensive document.
- 12:54, 23 November 2009 diff hist +2,093 N Bioscape Scoring Techniques Started a collection of scoring techniques.
- 12:31, 23 November 2009 diff hist +94 Bioscape Manual Added missing links plus new document.
- 12:29, 23 November 2009 diff hist +42 Bioscape Workflow Added links to methods/scoring documentation.
- 17:07, 17 November 2009 diff hist +1,435 N Bioscape Result Assessment New page: The suggestions produced by Bioscape's search activities can be assessed subject to the availability of "gold standard" data which confirms whether each particular result can be regarded a...
- 13:24, 17 November 2009 diff hist +33 Bioscape Manual Added link to new page.
- 18:29, 16 November 2009 diff hist 0 File:Bioscape-advanced-search-dialogue.png uploaded a new version of "Image:Bioscape-advanced-search-dialogue.png": The Bioscape advanced search dialogue. current
- 18:26, 16 November 2009 diff hist +440 Using the Bioscape Web Application →Gene Summaries: Added ad-hoc details. current
- 18:25, 16 November 2009 diff hist +46 N File:Bioscape-gene-summary-adhoc-detail.png Qualifier details for a Bioscape gene summary. current
- 18:21, 16 November 2009 diff hist +75 N File:Bioscape-gene-summary-adhoc.png The Bioscape gene summary with a qualifier term used to filter the results. current
- 18:16, 16 November 2009 diff hist 0 File:Bioscape-gene-summary.png uploaded a new version of "Image:Bioscape-gene-summary.png": The Bioscape gene summary. current
- 18:16, 16 November 2009 diff hist 0 File:Bioscape-search-disambiguation-dialogue.png uploaded a new version of "Image:Bioscape-search-disambiguation-dialogue.png": The Bioscape search disambiguation dialogue. current
- 18:14, 16 November 2009 diff hist +1,409 Using the Bioscape Web Application →Searching: Updated search dialogue, added ad-hoc field description.
- 17:54, 16 November 2009 diff hist +59 N File:Bioscape-search-dialogue-adhoc.png The Bioscape search dialogue with ad-hoc search facilities. current
- 20:29, 13 November 2009 diff hist +3,142 Bioscape Workflow Added labelling and data hierarchy notes.
- 20:07, 13 November 2009 diff hist +410 N Supported Data Sources Incomplete draft.
- 19:45, 13 November 2009 diff hist +129 Bioscape Data Sources Added link to new page.
- 19:18, 11 November 2009 diff hist +659 Bioscape Tokenisation
- 15:03, 11 November 2009 diff hist +1,423 N Bioscape Tokenisation Initial notes.
- 14:52, 11 November 2009 diff hist +163 Bioscape Searching →Tokenisation: Added link to new page.
- 14:48, 11 November 2009 diff hist +61 Bioscape Indexing Qualified the B-tree remarks.
- 17:47, 6 November 2009 diff hist +716 Bioscape Searching →Phrases and Validation: Added validation example.
- 13:03, 6 November 2009 diff hist +1,612 Bioscape Data Sources Added export and extraction notes, overview.
- 12:51, 6 November 2009 diff hist +908 Bioscape Searching Added reading and writing notes.
- 15:39, 5 November 2009 diff hist +1,496 Bioscape Searching →Locating Matches: Added the start of the description of phrases and validation.
- 15:04, 5 November 2009 diff hist +552 Bioscape Searching Modified locator tasks.
- 14:57, 5 November 2009 diff hist +2,126 Bioscape Searching Added derived term generation description, variation generation summary. Reordered sections.
- 14:04, 5 November 2009 diff hist +1,271 Bioscape Searching Added overview/workflow diagrams.
- 19:20, 4 November 2009 diff hist +1,812 Bioscape Searching →Variations within Search Terms: Added a description of the variation mechanisms.
- 17:36, 4 November 2009 diff hist +609 Bioscape Searching →Search Overview: Added speculative search diagram and description.
- 14:04, 3 November 2009 diff hist +1,065 Bioscape Searching Added overview/workflow.
- 13:23, 30 October 2009 diff hist +1 Bioscape Indexing Updated Lucene format link, fixed wording.
- 12:59, 30 October 2009 diff hist +493 Bioscape Indexing Added indexing solution file format references.
- 13:20, 29 October 2009 diff hist +1,746 Bioscape Indexing Added identifier conversion notes.
- 13:45, 27 October 2009 diff hist +98 Text Indexing Resources Added Tokyo Dystopia. current
- 13:43, 26 October 2009 diff hist +10,581 iRefIndex/PBR Notes Added explanatory queries, details. Moved observations to the top. current
- 11:00, 26 October 2009 diff hist +22 iRefIndex/PBR Notes →Observations: Fixed first observation: "BIND identifiers" -> "distinct human interaction identifiers".
- 17:35, 23 October 2009 diff hist -72 MediaWiki:CustomEditTemplates The CustomEdit extension seems too restrictive for our purposes. current
- 15:49, 23 October 2009 diff hist +2,805 N Bioscape Data Types New page: Bioscape is aware of a number of different data types, focusing mostly on the notion of a bioentity, but handling that and other kinds of data. These data types are defined in the <tt>bios...
- 15:27, 23 October 2009 diff hist +26 Bioscape Manual Added link to a new page.
- 13:00, 23 October 2009 diff hist +98 Nm UNTITLED Dummy article created for Simple Forms extension current
- 12:29, 23 October 2009 diff hist +72 N MediaWiki:CustomEditTemplates New page: * Template:BioinformaticsPerson - used to edit bioinformatics people
- 16:34, 22 October 2009 diff hist +2,454 iRefIndex/PBR Notes →Retrieving BIND Identifiers: Added query for identifiers without considering interactions.
- 17:59, 21 October 2009 diff hist +596 Bioscape Searching Added section.
- 13:07, 21 October 2009 diff hist +407 Bioscape Indexing →Efficient access to index storage: Added a note about the retrieval of complete result sets.
- 12:14, 21 October 2009 diff hist +2,119 Bioscape Indexing →Convenient access to document identifiers: Added an example of the genuine identifier retrieval problem.
- 17:37, 20 October 2009 diff hist +260 m Bioscape Methods Changed formatting of tables.
- 17:33, 20 October 2009 diff hist -16 m Bioscape Web Resources Changed formatting of tables.
- 17:32, 20 October 2009 diff hist -539 m Bioscape Methods Changed formatting of tables.
- 17:30, 20 October 2009 diff hist +16 m Bioscape Web Resources Changed formatting of tables.
- 17:28, 20 October 2009 diff hist +760 m Bioscape Methods Formatting changes to tables.
- 17:28, 19 October 2009 diff hist +242 Text Indexing Resources Added link, category.
- 17:13, 19 October 2009 diff hist +112 Bioscape Manual Made a separate topics list for development, adding links to various new and related pages.
- 17:12, 19 October 2009 diff hist +149 Text Mining Resources Added link to summary. Added category.
- 17:10, 19 October 2009 diff hist +181 Bioscape Indexing Added link to new page.
- 17:06, 19 October 2009 diff hist +1,011 Text Indexing Resources
- 15:52, 19 October 2009 diff hist +2,176 N Text Indexing Resources New page: A considerable number of text indexing solutions exist. This document discusses some of the more widely-known open source solutions. * [http://www.htdig.org/ ht://Dig] - ''a search engine...
- 11:57, 19 October 2009 diff hist +564 Bioscape Searching →Locating Matches: Added a brief description of locators, sources and phrases.
- 12:04, 16 October 2009 diff hist +2,025 N Bioscape Web Resources A description of the bsweb package organisation.
- 11:44, 16 October 2009 diff hist +29 Bioscape Manual Added new document.
- 16:03, 15 October 2009 diff hist +786 Text Mining Resources →Text Search Resources: Added MEDIE.
- 15:37, 15 October 2009 diff hist +1,627 Text Mining Resources →Notes from the Text Mining Tutorial at EBI: Added more resources with separate lists for different resource types.
- 12:51, 15 October 2009 diff hist +3,319 Text Mining Resources Initial notes.
- 10:50, 9 October 2009 diff hist +276 Text Mining Resources Added FreeLing and NLTK.
- 12:55, 2 October 2009 diff hist +1,616 iRefIndex/PBR Notes →Retrieving BIND Identifiers: Added queries for interaction identifiers, clarifying what the existing queries actually retrieve.
- 11:51, 2 October 2009 diff hist +28 Bioscape Manual Added link to data sources page.
- 11:50, 2 October 2009 diff hist +26 Bioscape Distribution →Data Sources: Added link.
- 11:49, 2 October 2009 diff hist +23 m Bioscape Workflow Added category.
- 11:48, 2 October 2009 diff hist +1,845 N Bioscape Workflow Added workflow information.
- 11:16, 2 October 2009 diff hist +24 Bioscape Manual Added link to new page.
- 17:20, 1 October 2009 diff hist +4,835 N Bioscape Data Sources Initial version of data sources documentation.
- 16:21, 29 September 2009 diff hist +102 Bioscape Development →Adding New Data Sources and Types: Added link to new document.
- 11:44, 28 September 2009 diff hist +86 m iRefIndex/PBR Notes →Results: Added table borders.
- 11:43, 28 September 2009 diff hist +43 m iRefIndex/PBR Notes →Observations: Added table border.
- 18:52, 25 September 2009 diff hist +105 iRefIndex/PBR Notes →Observations: Added bug link.
- 18:46, 25 September 2009 diff hist +20 iRefIndex/PBR Notes →Observations: Clarified identifier 100771 occurrence.
- 18:38, 25 September 2009 diff hist +78 iRefIndex/PBR Notes →Observations: Formatting edits.
- 16:26, 25 September 2009 diff hist +6,480 iRefIndex/PBR Notes →Queries: Added BIND identifier extraction.
- 15:19, 25 September 2009 diff hist +1,503 N Text Mining Resources New page: Some notes on open source text mining resources: * "The Text Mining Tool Evaluation project will describe the process of text mining, identify non-proprietary software that can search blo...
- 15:37, 24 September 2009 diff hist +223 iRefIndex Output and Statistics →Building PSI_MI_TAB_Maker: Added SHA dependency, library version note.
- 11:45, 23 September 2009 diff hist +465 Bioscape Indexing Added filtered index notes.
- 15:47, 22 September 2009 diff hist +22 m Bioscape Searching →Text Indexing: Added link.
- 15:46, 22 September 2009 diff hist +971 N Bioscape Indexing Initial notes.
- 14:43, 22 September 2009 diff hist +23 m Bioscape Dependencies Added category.
- 14:43, 22 September 2009 diff hist +1 m Bioscape Methods →Processing, Methods and Scoring: Tidying.
- 14:42, 22 September 2009 diff hist +23 Bioscape Status 2009 current
- 11:56, 22 September 2009 diff hist +578 N Bioscape Status 2009 New page: Some notes about the status of Bioscape in September 2009. == Changes Since 2008 == * Reorganised the code base and database schema to better support a wider range of data types in a con...
- 16:21, 21 September 2009 diff hist 0 Bioscape Methods →Result Scoring Techniques: Moved heading.
- 16:20, 21 September 2009 diff hist +1,332 Bioscape Methods →Result Scoring: Added currently used methods.
- 16:12, 21 September 2009 diff hist +932 Bioscape Methods →Sentence Scoring: Added a brief description.
- 16:05, 21 September 2009 diff hist +962 Bioscape Methods →Search Scoring: Added brief description.
- 15:55, 21 September 2009 diff hist +225 Bioscape Methods →Term Scoring: Added filtering note.
- 15:47, 21 September 2009 diff hist +1,087 Bioscape Methods →Term Scoring: Added currently used methods.